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Title :   X-RAY STRUCTURE OF P. SYRINGAE Q888A4 OXIDOREDUCTASE AT RESOLUTION 2.5A, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET PSR10

Authors :   A. P. Kuzin, Y. Chen, F. Forouhar, S. Vorobiev, T. Acton, L. C. Ma, R. Xiao, G. T. Montelione, J. F. Hunt, T. Tong, Northeast Structural Genomics Consortium (Nesg)

Date :   05 Nov 09 (Deposition) - 24 Nov 09 (Release) - 01 Dec 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym./Biol. Unit : A,B

Keywords :   Oxidoreductase, Psr10, Q888A4, X-Ray, Structure, Psi, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Northeast Structural Genomics Consortium (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. P. Kuzin, Y. Chen, F. Forouhar, S. Vorobiev, T. Acton, L. C. Ma, R. Xiao, G. T. Montelione, J. F. Hunt, T. Tong
X-Ray Structure Of P. Syringae Q888A4 Oxidoreductase At Resolution 2. 5A, Northeast Structural Genomics Consortium Target Psr10
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - AMINE OXIDASE, FLAVIN-CONTAINING
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3).MAGIC
	Expression System Taxid	:	469008
	Gene	:	PSPTO1126, PSPTO_1126
	Organism Scientific	:	PSEUDOMONAS SYRINGAE PV. TOMATO
	Organism Taxid	:	323

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 18)

No.	Name	Count	Type	Full Name
1	FAD	2	Ligand/Ion	FLAVIN-ADENINE DINUCLEOTIDE
2	MSE	16	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ILE A:8 , GLY A:9 , GLY A:11 , ILE A:12 , ALA A:13 , ASP A:32 , LYS A:33 , SER A:34 , GLY A:39 , ARG A:40 , MSE A:41 , MSE A:53 , GLY A:54 , ALA A:55 , GLN A:56 , TYR A:57 , CYS A:126 , ILE A:128 , ALA A:157 , THR A:158 , GLN A:162 , HIS A:232 , TRP A:276 , ALA A:279 , ARG A:280 , GLY A:301 , ASP A:302 , ARG A:308 , VAL A:309 , ALA A:312 , HOH A:418 , HOH A:448	BINDING SITE FOR RESIDUE FAD A 401
2	AC2	SOFTWARE	ILE B:8 , GLY B:9 , GLY B:11 , ILE B:12 , ALA B:13 , ASP B:32 , LYS B:33 , SER B:34 , GLY B:39 , ARG B:40 , MSE B:41 , GLY B:54 , ALA B:55 , GLN B:56 , TYR B:57 , PHE B:58 , ILE B:128 , ALA B:157 , THR B:158 , HIS B:232 , TRP B:276 , ALA B:279 , ARG B:280 , GLY B:301 , ASP B:302 , GLY B:307 , ARG B:308 , VAL B:309 , ALA B:312 , HOH B:405 , HOH B:406 , HOH B:411 , HOH B:457	BINDING SITE FOR RESIDUE FAD B 402

(no "SS Bond" information available for 3KKJ)

Asymmetric/Biological Unit

No.	Residues
1	Gly A:149	-	Pro A:150
2	Gly B:149	-	Pro B:150

(no "SAP(SNP)/Variant" information available for 3KKJ)

(no "PROSITE Motif" information available for 3KKJ)

(no "Exon" information available for 3KKJ)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:328
 aligned with RNLS_PSESM | Q888A4 from UniProtKB/Swiss-Prot  Length:328

    Alignment length:328
                                                                                                                                                                                                                                                                                                                                                                328 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321      | 
           RNLS_PSESM     2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPSPDEQVRWVGKPGMSAITRAMRGDMPVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAAAPKLASVVAGVKMDPTWAVALAFETPLQTPMQGCFVQDSPLDWLARNRSKPERDDTLDTWILHATSQWSRQNLDASREQVIEHLHGAFAELIDCTMPAPVFSLAHRWLYARPAGAHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRLLEHLQ-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3kkjA01 A:2-42,A:111-179,A:287-329       3kkjA02 A:43-110,A:180-286  [code=3.90.660.10, no name defined]     3kkjA01 A:2-42,A:111-179,A:287-329                                   3kkjA02 A:43-110,A:180-286  [code=3.90.660.10, no name defined]                                            3kkjA01 A:2-42,A:111-179,A:287-329          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhh...eeee.......hhh.eeee..eeee.........hhhhhhhhhhhhhhh.eeee...eeee.............eeee....hhhhhhhhh...ee....eeeeee....eeeee....eeeee..eee..hhhhhhhhhhhhhhhhhhhh...eeeeeeeeeee.........eeee....eeeeee.hhh.......eeeeeeehhhhhhhh...hhhhhhhhhhhhhhh..........eeeeeeeeeeee........eee....eee.hhhhh..hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kkj A   2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRmSSKRSDAGALDmGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPSPDEQVRWVGKPGmSAITRAmRGDmPVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAAAPKLASVVAGVKmDPTWAVALAFETPLQTPmQGCFVQDSPLDWLARNRSKPERDDTLDTWILHATSQWSRQNLDASREQVIEHLHGAFAELIDCTmPAPVFSLAHRWLYARPAGAHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRLLEHLQL 329
                                    11        21        31        41        51 |      61        71        81        91       101       111    |  121       131       141       151       161       171       181|      191       201       211       221       231       241       251       261   |   271       281       291       301       311       321        
                                                                  41-MSE      53-MSE                                                 109-MSE  |   |                                                           182-MSE           200-MSE                                                          265-MSE                                                            
                                                                                                                                            116-MSE                                                                                                                                                                                                                 
                                                                                                                                                120-MSE

Chain B from PDB  Type:PROTEIN  Length:328
 aligned with RNLS_PSESM | Q888A4 from UniProtKB/Swiss-Prot  Length:328

    Alignment length:328
                                                                                                                                                                                                                                                                                                                                                                328 
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321      | 
           RNLS_PSESM     2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSDAGALDMGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPSPDEQVRWVGKPGMSAITRAMRGDMPVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAAAPKLASVVAGVKMDPTWAVALAFETPLQTPMQGCFVQDSPLDWLARNRSKPERDDTLDTWILHATSQWSRQNLDASREQVIEHLHGAFAELIDCTMPAPVFSLAHRWLYARPAGAHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRLLEHLQ-   -
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3kkjB01 B:2-42,B:111-179,B:287-329       3kkjB02 B:43-110,B:180-286  [code=3.90.660.10, no name defined]     3kkjB01 B:2-42,B:111-179,B:287-329                                   3kkjB02 B:43-110,B:180-286  [code=3.90.660.10, no name defined]                                            3kkjB01 B:2-42,B:111-179,B:287-329          CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..hhhhhhhhhhhhhh...eeee.......hhh.ee......ee.........hhhhhhhhhhhhhhh.eeee...eeee...ee........eeee....hhhhhhhhh...ee....eeeeee....eeeee....eeeee..eee..hhhhhhhhhhhhhhhhhhhhh..eeeeeeeeeee.........eeee....eeeeee...........eeeeeeehhhhhhhh...hhhhhhhhhhhhhhh..........eeeeeeeeeeee........eee....eee.hhhhh..hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kkj B   2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRmSSKRSDAGALDmGAQYFTARDRRFATAVKQWQAQGHVAEWTPLLYNFHAGRLSPSPDEQVRWVGKPGmSAITRAmRGDmPVSFSCRITEVFRGEEHWNLLDAEGQNHGPFSHVIIATPAPQASTLLAAAPKLASVVAGVKmDPTWAVALAFETPLQTPmQGCFVQDSPLDWLARNRSKPERDDTLDTWILHATSQWSRQNLDASREQVIEHLHGAFAELIDCTmPAPVFSLAHRWLYARPAGAHEWGALSDADLGIYVCGDWCLSGRVEGAWLSGQEAARRLLEHLQL 329
                                    11        21        31        41        51 |      61        71        81        91       101       111    |  121       131       141       151       161       171       181|      191       201       211       221       231       241       251       261   |   271       281       291       301       311       321        
                                                                  41-MSE      53-MSE                                                 109-MSE  |   |                                                           182-MSE           200-MSE                                                          265-MSE                                                            
                                                                                                                                            116-MSE                                                                                                                                                                                                                 
                                                                                                                                                120-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3KKJ)

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(bba) Sandwich (528)

Topology: FAD/NAD(P)-binding domain (373)

Homologous Superfamily: [code=3.50.50.60, no name defined] (373)

Tomato (Pseudomonas syringae pv) (1)

1a	3kkjA01	A:2-42,A:111-179,A:287-329
1b	3kkjB01	B:2-42,B:111-179,B:287-329

Architecture: Alpha-Beta Complex (3881)

Topology: Polyamine Oxidase; Chain A, domain 2 (62)

Homologous Superfamily: [code=3.90.660.10, no name defined] (61)

Tomato (Pseudomonas syringae pv) (1)

2a	3kkjA02	A:43-110,A:180-286
2b	3kkjB02	B:43-110,B:180-286

(no "Pfam Domain" information available for 3KKJ)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (RNLS_PSESM | Q888A4)

molecular function
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Gly A:149 - Pro A:150	[ RasMol ]
		Gly B:149 - Pro B:150	[ RasMol ]

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Description

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Chains, Units

Ligands, Modified Residues, Ions (2, 18)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

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