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(-) Description

Title :  CRYSTAL STRUCTURE OF PREDICTED METAL-DEPENDENT PHOSPHOHYDROLASE (ZP_00055740.2) FROM MAGNETOSPIRILLUM MAGNETOTACTICUM MS-1 AT 1.37 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  29 Oct 09  (Deposition) - 24 Nov 09  (Release) - 24 Nov 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.37
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Predicted Metal-Dependent Phosphohydrolase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2 (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Predicted Metal-Dependent Phosphohydrolase (Zp_00055740. 2) From Magnetospirillum Magnetotacticum Ms-1 At 1. 37 A Resolution ;
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PREDICTED METAL-DEPENDENT PHOSPHOHYDROLASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ZP_00055740.2
    Organism Scientific: MAGNETOSPIRILLUM MAGNETOTACTICUM MS-1
    Organism Taxid: 272627

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric/Biological Unit (4, 10)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2CA1Ligand/IonCALCIUM ION
3MSE7Mod. Amino AcidSELENOMETHIONINE
4PG41Ligand/IonTETRAETHYLENE GLYCOL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:29 , THR A:155 , HOH A:277BINDING SITE FOR RESIDUE CA A 200
2AC2SOFTWAREARG A:36 , ARG A:37 , HOH A:255 , HOH A:266 , HOH A:373BINDING SITE FOR RESIDUE ACT A 201
3AC3SOFTWAREPHE B:149 , TYR B:183 , HOH B:464 , HOH B:491BINDING SITE FOR RESIDUE PG4 B 200

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KH1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3KH1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KH1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KH1)

(-) Exons   (0, 0)

(no "Exon" information available for 3KH1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:196
 aligned with D1MPT5_MAGMG | D1MPT5 from UniProtKB/TrEMBL  Length:200

    Alignment length:199
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191         
         D1MPT5_MAGMG     2 MIPFPESRLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEIDAGDTFIHDEAGNEDKEERERKAAARLFGLLPPDQAAEYSALWQEYEARETADARFADALDRLQPLLHNFETEGGTWKPHGVTRAKVDKLLPRIEAGSKRLGAYARALVDEAVRRGYLAP 200
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhh.eeeee......eeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhh........---hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kh1 A   1 mIPFPESRLAAQmSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATmAFLLAEYADEAVQIGRVARmLLIHDIVEIDAGDTFIHDEA---DKEERERKAAARLFGLLPPDQAAEYSALWQEYEARETADARFADALDRLQPLLHNFETEGGTWKPHGVTRAKVDKLLPRIEAGSKRLGAYARALVDEAVRRGYLAP 199
                            |       10  |     20        30        40        50        60        70        80        90   |   100       110       120       130       140       150       160       170       180       190         
                            |          13-MSE                               50-MSE              70-MSE              90  94                                                                                                         
                            1-MSE                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:189
 aligned with D1MPT5_MAGMG | D1MPT5 from UniProtKB/TrEMBL  Length:200

    Alignment length:194
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196    
         D1MPT5_MAGMG     7 ESRLAAQMSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATMAFLLAEYADEAVQIGRVARMLLIHDIVEIDAGDTFIHDEAGNEDKEERERKAAARLFGLLPPDQAAEYSALWQEYEARETADARFADALDRLQPLLHNFETEGGTWKPHGVTRAKVDKLLPRIEAGSKRLGAYARALVDEAVRRGYLAP 200
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.eeeee......eeehhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..hhhhhh......-----hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kh1 B   6 ESRLAAQmSFVVEIDKLKTILRQTLLTDSSRRENDAEHSWHIATmAFLLAEYADEAVQIGRVARmLLIHDIVEIDAGDTFIHD-----DKEERERKAAARLFGLLPPDQAAEYSALWQEYEARETADARFADALDRLQPLLHNFETEGGTWKPHGVTRAKVDKLLPRIEAGSKRLGAYARALVDEAVRRGYLAP 199
                                   |15        25        35        45    |   55        65    |   75        85  |     95       105       115       125       135       145       155       165       175       185       195    
                                  13-MSE                               50-MSE              70-MSE            88    94
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KH1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KH1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3KH1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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