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(-) Description

Title :  CRYSTAL STRUCTURE OF PROCRUCIFERIN, 11S GLOBULIN FROM BRASSICA NAPUS
 
Authors :  M. R. Tandang-Silvas, B. Mikami, N. Maruyama, S. Utsumi
Date :  29 Oct 09  (Deposition) - 21 Apr 10  (Release) - 11 Dec 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.98
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E,F  (1x)
Keywords :  Procruciferin, 11S Seed Globulin, Brassica Napus, Rapeseed, Seed Storage Protein, Storage Protein, Plant Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. R. Tandang-Silvas, T. Fukuda, C. Fukuda, K. Prak, C. Cabanos, A. Kimura, T. Itoh, B. Mikami, S. Utsumi, N. Maruyama
Conservation And Divergence On Plant Seed 11S Globulins Based On Crystal Structures.
Biochim. Biophys. Acta V. 1804 1432 2010
PubMed-ID: 20215054  |  Reference-DOI: 10.1016/J.BBAPAP.2010.02.016

(-) Compounds

Molecule 1 - CRUCIFERIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21-D, PETCRU2/3A
    Expression System Strain: AD494(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: PLANT GENE
    Organism Common: RAPE
    Organism Scientific: BRASSICA NAPUS
    Organism Taxid: 3708

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    DEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1GOL6Ligand/IonGLYCEROL
2SO44Ligand/IonSULFATE ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION
Biological Unit 2 (2, 5)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL
2SO42Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:48 , TYR A:56 , PHE A:61 , PRO A:194 , TYR A:196 , TRP A:207BINDING SITE FOR RESIDUE GOL A 467
02AC2SOFTWAREHIS A:356 , ARG A:389 , VAL C:227 , LYS C:230BINDING SITE FOR RESIDUE SO4 A 474
03AC3SOFTWAREILE B:28 , VAL B:46 , TYR B:48 , TYR B:56 , PHE B:61 , TYR B:196BINDING SITE FOR RESIDUE GOL B 467
04AC4SOFTWAREVAL C:46 , TYR C:48 , TYR C:56 , PHE C:61 , PRO C:194 , TYR C:196BINDING SITE FOR RESIDUE GOL C 467
05AC5SOFTWAREHIS B:184 , SER C:183 , HIS C:184 , ARG C:322BINDING SITE FOR RESIDUE SO4 C 472
06AC6SOFTWAREILE D:28 , VAL D:46 , TYR D:48 , TYR D:56 , PHE D:61 , PRO D:194 , TYR D:196BINDING SITE FOR RESIDUE GOL D 467
07AC7SOFTWAREHIS D:356 , GLN D:358 , ARG D:389 , VAL F:227BINDING SITE FOR RESIDUE SO4 D 473
08AC8SOFTWAREILE E:28 , TYR E:48 , TYR E:56 , PHE E:61 , PRO E:194 , TYR E:196BINDING SITE FOR RESIDUE GOL E 467
09AC9SOFTWAREVAL F:30 , VAL F:46 , TYR F:48 , TYR F:56 , TYR F:196 , TRP F:207BINDING SITE FOR RESIDUE GOL F 467
10BC1SOFTWARELYS E:230 , HIS F:356 , ARG F:389 , PRO F:455BINDING SITE FOR RESIDUE SO4 F 475

(-) SS Bonds  (12, 12)

Asymmetric Unit
No.Residues
1A:7 -A:40
2A:83 -A:283
3B:7 -B:40
4B:83 -B:283
5C:7 -C:40
6C:83 -C:283
7D:7 -D:40
8D:83 -D:283
9E:7 -E:40
10E:83 -E:283
11F:7 -F:40
12F:83 -F:283

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Phe A:3 -Pro A:4
2Phe B:3 -Pro B:4
3Phe C:3 -Pro C:4
4Phe D:3 -Pro D:4
5Pro D:264 -Pro D:265
6Phe E:3 -Pro E:4
7Arg E:263 -Pro E:264
8Phe F:3 -Pro F:4

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KGL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KGL)

(-) Exons   (0, 0)

(no "Exon" information available for 3KGL)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:398
 aligned with Q7XB53_BRANA | Q7XB53 from UniProtKB/TrEMBL  Length:466

    Alignment length:453
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450   
         Q7XB53_BRANA     1 QQFPNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSS 453
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeee..eeeee....hhhhhhhheeeeeeee...eeeeeeee...eeeeeee.eeeeeee.......eee.......-----------------------------------------...eee..eeeee..eeeee....eeeee......eeeeeeee.............eee.....................hhhhhhhhhhhhhhhh.hhhhhhhhh........eee............--------------.......eee..hhh.eeeee...eeeeee......hhhhhh.eeeeeeee..eeeeeeee....eeeeeee.eeeeeee.....eeeeeeee...eeee....eeeeee...eeeeeeee......eee......hhhhhhhhhhhhhhh.hhhhhhhhhhh.....eee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kgl A   1 QQFPNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPG-----------------------------------------GFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPL--------------TICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSS 453
                                    10        20        30        40        50        60        70        80        90     |   -         -         -         -       140       150       160       170       180       190       200       210       220       230       240       250       260     |   -         -|      290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450   
                                                                                                                          96                                       138                                                                                                                             266            281                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:387
 aligned with Q7XB53_BRANA | Q7XB53 from UniProtKB/TrEMBL  Length:466

    Alignment length:453
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452   
         Q7XB53_BRANA     3 FPNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSGP 455
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeee...eeeee....hhhhhhhheeeeeeee...eeeeeee....eeeeeee.eeeeeee......-------------------------------------------------------.....eeeee..eeeee....eeeee......eeeeeeee..............ee.....................hhhhhhhhhhhhhhhh.hhhhhhhh.........eee..............-----------........eee..hhhhh.eee...eeeeee......hhhhhh.eeeeeeee...eeeeeee....eeeeeee.eeeeeee.....eeeeeeee...eeee....eeeeee...eeeeeeee......eee......hhhhhhhhhhhhhhh.hhhhhhhhhhh.....ee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kgl B   3 FPNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAE-------------------------------------------------------DMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRS-----------ETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSGP 455
                                    12        22        32        42        52        62        72        82  |      -         -         -         -         -       142       152       162       172       182       192       202       212       222       232       242       252       262     |   -       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452   
                                                                                                             85                                                     141                                                                                                                            268         280                                                                                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:387
 aligned with Q7XB53_BRANA | Q7XB53 from UniProtKB/TrEMBL  Length:466

    Alignment length:455
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450     
         Q7XB53_BRANA     1 QQFPNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSGP 455
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeee..eeeee....hhhhhhhheeeeeeee...eeeeeee....eeeeeee.eeeeeee.......-----------------------------------------------------......eeeee..eeeee....eeeee......eeeeeeee..............ee......................hhhhhhhhhhhhhhh.hhhhhhhhh........eee..........---------------........eee........eee...eeeeee......hhhhhh.eeeeeeee..eeeeeeee....eeeeeee.eeeeeee.....eeeeeeee...eeee....eeeeee...eeeeeeee......eee...........hhhhhhhhhh.hhhhhhhhhhh.....eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kgl C   1 QQFPNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAET-----------------------------------------------------RDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRP---------------ETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSGP 455
                                    10        20        30        40        50        60        70        80     |   -         -         -         -         -       140       150       160       170       180       190       200       210       220       230       240       250       260   |     -       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450     
                                                                                                                86                                                   140                                                                                                                         264             280                                                                                                                                                                               


Chain D from PDB  Type:PROTEIN  Length:390
 aligned with Q7XB53_BRANA | Q7XB53 from UniProtKB/TrEMBL  Length:466

    Alignment length:455
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451     
         Q7XB53_BRANA     2 QFPNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSGPA 456
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeee..eeeee....hhhhhhhheeeeeeee...eeeeeeee...eeeeeee.eeeeeee......------------------------------------------------------......eeeee..eeeee....eeeeee.....eeeeeeee.............eee.....................hhhhhhhhhhhhhhhh.hhhhhh...........eee..............-----------........eee..hhhhh.eee...eeeeee......hhhhhh.eeeeeeee..eeeeeeee....eeeeeee.eeeeeee.....eeeeeeee...eeee....eeeeee...eeeeeeee......eee...........hhhhhhhhhh.hhhhhhhhhhh.....eee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kgl D   2 QFPNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAE------------------------------------------------------RDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRS-----------ETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSGPA 456
                                    11        21        31        41        51        61        71        81   |     -         -         -         -         -       141       151       161       171       181       191       201       211       221       231       241       251       261      |  -       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451     
                                                                                                              85                                                    140                                                                                                                             268         280                                                                                                                                                                                


Chain E from PDB  Type:PROTEIN  Length:389
 aligned with Q7XB53_BRANA | Q7XB53 from UniProtKB/TrEMBL  Length:466

    Alignment length:455
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450     
         Q7XB53_BRANA     1 QQFPNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSGP 455
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeee..eeeee....hhhhhhhheeeeeeee...eeeeeeee..eeeeeeee.eeeeeee.......---------------------------------------------------........eeeee..eeeee....eeeee......eeeeeeee.............eee......................hhhhhhhhhhhhhhh.hhhhhhhhhh.......eee..........---------------........eee........eee...eeeeee......hhhhhh.eeeeeeee..eeeeeeee....eeeeeee..eeeeee.....eeeeeee....eeee....eeeeee...eeeeeeee......eee......hhhhhhhhhhhhhhh.hhhhhhhhhhh.....eee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kgl E   1 QQFPNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAET---------------------------------------------------GFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRP---------------ETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSGP 455
                                    10        20        30        40        50        60        70        80     |   -         -         -         -         -       140       150       160       170       180       190       200       210       220       230       240       250       260   |     -       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450     
                                                                                                                86                                                 138                                                                                                                           264             280                                                                                                                                                                               


Chain F from PDB  Type:PROTEIN  Length:396
 aligned with Q7XB53_BRANA | Q7XB53 from UniProtKB/TrEMBL  Length:466

    Alignment length:453
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452   
         Q7XB53_BRANA     3 FPNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSVFQPGGGSPFGEGQGQGQQGQGQGHQGQGQGQQGQQGQQGQQSQGQGFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRSQRPQEEVNGLEETICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSGP 455
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-3kglF01 F:289-438                                                                                                                             ----------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-3kglF02 F:289-438                                                                                                                             ----------------- Pfam domains (2)
           Pfam domains (3) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-3kglF03 F:289-438                                                                                                                             ----------------- Pfam domains (3)
           Pfam domains (4) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-3kglF04 F:289-438                                                                                                                             ----------------- Pfam domains (4)
           Pfam domains (5) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-3kglF05 F:289-438                                                                                                                             ----------------- Pfam domains (5)
           Pfam domains (6) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-3kglF06 F:289-438                                                                                                                             ----------------- Pfam domains (6)
           Pfam domains (7) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-3kglF07 F:289-438                                                                                                                             ----------------- Pfam domains (7)
           Pfam domains (8) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-3kglF08 F:289-438                                                                                                                             ----------------- Pfam domains (8)
           Pfam domains (9) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-3kglF09 F:289-438                                                                                                                             ----------------- Pfam domains (9)
          Pfam domains (10) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-3kglF10 F:289-438                                                                                                                             ----------------- Pfam domains (10)
          Pfam domains (11) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-3kglF11 F:289-438                                                                                                                             ----------------- Pfam domains (11)
          Pfam domains (12) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Cupin_1-3kglF12 F:289-438                                                                                                                             ----------------- Pfam domains (12)
         Sec.struct. author ................eeeee..eeeee....hhhhhhhheeeeeeee...eeeeeeee..eeeeeeee..eeeeee.......ee....---------------------------------------------....ee...eee...eeeee....eeeee......eeeeeeee.............eee...........hhhhh......hhhhhhhhhhhhhhh.hhhhhhhh.........eee..............------------.......eee..hhh.eeeee...eeeeee......hhhhhh.eeeeeeee...eeeeeee....eeeeeee.eeeeeee.....eeeeeeee...eeee....eeeeee...eeeeeeee......eee...........hhhhhhhhhh.hhhhhhhhhhh.....ee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kgl F   3 FPNECQLDQLNALEPSHVLKAEAGRIEVWDHHAPQLRCSGVSFVRYIIESKGLYLPSFFSTAKLSFVAKGEGLMGRVVPGCAETFQDSSV---------------------------------------------GFRDMHQKVEHIRTGDTIATHPGVAQWFYNDGNQPLVIVSVLDLASHQNQLDRNPRPFYLAGNNPQGQVWIEGREQQPQKNILNGFTPEVLAKAFKIDVRTAQQLQNQQDNRGNIIRVQGPFSVIRPPLRS------------TICSARCTDNLDDPSNADVYKPQLGYISTLNSYDLPILRFLRLSALRGSIRQNAMVLPQWNANANAVLYVTDGEAHVQVVNDNGDRVFDGQVSQGQLLSIPQGFSVVKRATSEQFRWIEFKTNANAQINTLAGRTSVLRGLPLEVISNGYQISLEEARRVKFNTIETTLTHSSGP 455
                                    12        22        32        42        52        62        72        82        92         -         -         -         -     | 142       152       162       172       182       192       202       212       222       232       242       252       262     |   -       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452   
                                                                                                                    92                                           138                                                                                                                               268          281
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(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KGL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KGL)

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: Cupin (179)
(-)
Family: Cupin_1 (15)
(-)
Brassica napus (Rape) (1)
1aCupin_1-3kglF01F:289-438
1bCupin_1-3kglF02F:289-438
1cCupin_1-3kglF03F:289-438
1dCupin_1-3kglF04F:289-438
1eCupin_1-3kglF05F:289-438
1fCupin_1-3kglF06F:289-438
1gCupin_1-3kglF07F:289-438
1hCupin_1-3kglF08F:289-438
1iCupin_1-3kglF09F:289-438
1jCupin_1-3kglF10F:289-438
1kCupin_1-3kglF11F:289-438
1lCupin_1-3kglF12F:289-438

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q7XB53_BRANA | Q7XB53)
molecular function
    GO:0045735    nutrient reservoir activity    Functions in the storage of nutritious substrates.

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