Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF THE TRANSAMIDOSOME
 
Authors :  M. Blaise, M. Bailly, M. Frechin, S. Thirup, H. D. Becker, D. Kern
Date :  28 Oct 09  (Deposition) - 25 Aug 10  (Release) - 29 Sep 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L,M,N
Keywords :  Asprs, Gatcab, Atp-Binding, Aminoacyl-Trna Synthetase, Ligase, Nucleotide-Binding, Protein Biosynthesis, Ligase-Rna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Blaise, M. Bailly, M. Frechin, M. A. Behrens, F. Fischer, C. L. Oliveira, H. D. Becker, J. S. Pedersen, S. Thirup, D. Kern
Crystal Structure Of A Transfer-Ribonucleoprotein Particle That Promotes Asparagine Formation.
Embo J. V. 29 3118 2010
PubMed-ID: 20717102  |  Reference-DOI: 10.1038/EMBOJ.2010.192

(-) Compounds

Molecule 1 - NON-DISCRIMINATING AND ARCHAEAL-TYPE ASPARTYL-TRNA SYNTHETASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TTHA1452
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8
 
Molecule 2 - GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT A
    Chains: E, H
    EC Number: 6.3.5.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GATA, TTHA0573
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
    Synonym: GLU-ADT SUBUNIT A
 
Molecule 3 - ASPARTYL/GLUTAMYL-TRNA(ASN/GLN) AMIDOTRANSFERASE SUBUNIT B
    Chains: F, I
    EC Number: 6.3.5.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GATB, TTHA0366
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
    Synonym: ASP/GLU-ADT SUBUNIT B
 
Molecule 4 - GLUTAMYL-TRNA(GLN) AMIDOTRANSFERASE SUBUNIT C
    Chains: G, J
    EC Number: 6.3.5.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: GATC, TTHA0876
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8 / ATCC 27634 / DSM 579
    Synonym: GLU-ADT SUBUNIT C
 
Molecule 5 - TRNA-ASN
    Chains: K, L, M, N
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: THERMUS THERMOPHILUS
    Organism Taxid: 300852
    Strain: HB8

 Structural Features

(-) Chains, Units

  1234567891011121314
Asymmetric/Biological Unit : ABCDEFGHIJKLMN

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 135)

Asymmetric/Biological Unit (6, 135)
No.NameCountTypeFull Name
15MU4Mod. Nucleotide5-METHYLURIDINE 5'-MONOPHOSPHATE
2H2U4Mod. Nucleotide5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
3MG2Ligand/IonMAGNESIUM ION
4PSU4Mod. NucleotidePSEUDOURIDINE-5'-MONOPHOSPHATE
5UNK119Mod. Amino Acid
6ZN2Ligand/IonZINC ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS F:22 , CYS F:24 , CYS F:38 , CYS F:41BINDING SITE FOR RESIDUE ZN F 673
2AC2SOFTWAREHIS F:11 , GLU F:120 , GLU F:146 , HOH F:675 , HOH F:676 , HOH F:677BINDING SITE FOR RESIDUE MG F 674
3AC3SOFTWARECYS I:22 , CYS I:24 , CYS I:38 , CYS I:41BINDING SITE FOR RESIDUE ZN I 467
4AC4SOFTWAREHIS I:11 , GLU I:120 , GLU I:146 , HOH I:469 , HOH I:470 , HOH I:471BINDING SITE FOR RESIDUE MG I 468

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KFU)

(-) Cis Peptide Bonds  (15, 15)

Asymmetric/Biological Unit
No.Residues
1Glu A:99 -Glu A:100
2Glu B:99 -Glu B:100
3Glu C:99 -Glu C:100
4Glu D:99 -Glu D:100
5Gly E:140 -Ser E:141
6Leu E:242 -Pro E:243
7Pro E:243 -Pro E:244
8Met F:1 -Tyr F:2
9Val F:196 -Gly F:197
10Gly F:197 -Glu F:198
11Unk F:645 -Unk F:646
12Gly H:140 -Ser H:141
13Leu H:242 -Pro H:243
14Pro H:243 -Pro H:244
15Unk I:643 -Unk I:644

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KFU)

(-) PROSITE Motifs  (2, 4)

Asymmetric/Biological Unit (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1GATBPS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature.GATB_THET8137-151
 		  2F:137-151
I:137-151
2AMIDASESPS00571 Amidases signature.GATA_THET8139-170
 		  2E:139-170
H:139-170

(-) Exons   (0, 0)

(no "Exon" information available for 3KFU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:374
 aligned with SYDND_THET8 | Q5SIC2 from UniProtKB/Swiss-Prot  Length:422

    Alignment length:414
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410    
          SYDND_THET8     1 MRVLVRDLKAHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 414
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhh..eeeeeeeeeeeee....eeeeeee..eeeeeee..........eeeeeeeeee.......eeeeeeeeeeee........hhhhh......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..ee....----------------------------hhhhhhhhhhhhheeeeeeee.------------.eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeehhhhhhhhhhh.........hhhhhhhhhhhhhhhh...eeeee..hhhhh.............eeeeee..eeeeeeee...hhhhhhhhhhhh..hhhhhhhhhhhhhh....eeeeeeehhhhhhhhhh..hhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kfu A   1 MRVLVRDLKAHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTP----------------------------PQLYKQIMVGVFERVYEVAPVW------------EYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFP 414
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         -         -       180       190       200         -  |    220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410    
                                                                                                                                                                               150                          179                  200          213                                                                                                                                                                                                         


Chain B from PDB  Type:PROTEIN  Length:376
 aligned with SYDND_THET8 | Q5SIC2 from UniProtKB/Swiss-Prot  Length:422

    Alignment length:415
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     
          SYDND_THET8     1 MRVLVRDLKAHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPR 415
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh..eeeeeeeeeeeee....eeeeeee..eeeeeee..........eeeeeeeeee...hhh.eeeeeeeeeeee........hhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..ee....-----------------------------hhhhhhhhhhhheeeeeeee.----------...eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeehhhhhhhhhhh.........hhhhhhhhhhhhhhhh.....eeeeee.hhh..........eeeeeeeee..eeeeeeee...hhhhhhhh......hhhhhhhhhhhhhh....eeeeeeehhhhhhhhh...hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kfu B   1 MRVLVRDLKAHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTP-----------------------------QLYKQIMVGVFERVYEVAPVW----------LNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPR 415
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         -         -       180       190       200         -|      220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     
                                                                                                                                                                               150                           180                 200        211                                                                                                                                                                                                            


Chain C from PDB  Type:PROTEIN  Length:377
 aligned with SYDND_THET8 | Q5SIC2 from UniProtKB/Swiss-Prot  Length:422

    Alignment length:415
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     
          SYDND_THET8     1 MRVLVRDLKAHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPR 415
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh..eeeeeeeeeeeee....eeeeeee..eeeeeee..........eeeeeeeeee.......eeeeeeeeeeee........hhhhh......hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..ee....----------------------------hhhhhhhhhhhhheeeeeeee.----------...eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeehhhhhhhhhhh.........hhhhhhhhhhhhhhhh...eeeee..hhhhh.............eeeeee..eeeeeeee...hhhhhhhhhhhh..hhhhhhhhhhhhhh....eeeeeeehhhhhhhhhh..hhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kfu C   1 MRVLVRDLKAHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTP----------------------------PQLYKQIMVGVFERVYEVAPVW----------LNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPR 415
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         -         -       180       190       200         -|      220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410     
                                                                                                                                                                               150                          179                  200        211                                                                                                                                                                                                            


Chain D from PDB  Type:PROTEIN  Length:372
 aligned with SYDND_THET8 | Q5SIC2 from UniProtKB/Swiss-Prot  Length:422

    Alignment length:416
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410      
          SYDND_THET8     1 MRVLVRDLKAHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESLKAKGMDPEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRD 416
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhh..eeeeeeeeeeeee....eeeeeee..eeeeeee..........eeeeeeeeee...hhh.eeeeeeeeeeee........hhhhh....hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh..ee....-----------------------------hhhhhhhhhhhheeeeeeee..---------...eeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeehhhhhhhhhhh.........hhhhhhhhhhhhhhhh.....eeeeee.hhh..........eeeeeeeee..eeeeeeee...hhhhhhhh.------hhhhhhhhhhhhh....eeeeeeehhhhhhhhh...hhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kfu D   1 MRVLVRDLKAHVGQEVELLGFLHWRRDLGRIQFLLLRDRSGVVQVVTGGLKLPLPESALRVRGLVVENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEWRANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTP-----------------------------QLYKQIMVGVFERVYEVAPVWR---------LNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPRLTHAEAKRILKEELGYPVGQDLSEEAERLLGEYAKERWGSDWLFVTRYPRSVRPFYTYPEEDGTTRSFDLLFRGLEITSGGQRIHRYEELLESL------PEAFHGYLEVFKYGMPPHGGFAIGAERLTQKLLGLPNVRYARAFPRD 416
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150         -         -       180       190       200|        -|      220       230       240       250       260       270       280       290       300       310       320       330       340       350       360  |    370       380       390       400       410      
                                                                                                                                                                               150                           180                  201       211                                                                                                                                                     363    370                                              


Chain E from PDB  Type:PROTEIN  Length:468
 aligned with GATA_THET8 | Q9LCX3 from UniProtKB/Swiss-Prot  Length:471

    Alignment length:468
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461        
           GATA_THET8     2 LAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRELGLSVREVSWPSLPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEATARAHLKAPLGE 469
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.eeee....hhhhhh..........eeeee.........................hhhhhhhhh...eeeeee..hhhhh.........................hhhhhhhhhh....eeeeee....hhhhhhhh..eeee...................eeeeee.hhhhhhhhhhhhh...........................eeeee.hhh...hhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhh..hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh....eeeee.............hhhhhhhhhh.hhhhhhhh..eeeeeeeee..eeeeeeee....hhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------AMIDASES  PDB: E:139-170        ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kfu E   2 LAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRELGLSVREVSWPSLPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEATARAHLKAPLGE 469
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461        


Chain F from PDB  Type:PROTEIN  Length:447
 aligned with GATB_THET8 | Q9LCX2 from UniProtKB/Swiss-Prot  Length:469

    Alignment length:456
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450      
           GATB_THET8     1 MYEAVIGLEVHLHLKTRTKMFCGCRADYFGAEPNTHTCPVCLGLPGALPVPNRVAVEHGLRLALALGAEVPERLVFHRKNYFYPDLPKNYQISQYDLPLGRGGSLPLGERRVRIKRLHLEEDAGKSLHLEGRTLLDLNRAGSPLIELVTEPDLKTPEEARLFLQRIQALVQTLGISDASPEEGKLRADVNVSVRRVGEPLGTKVEIKNLNSFKSVQRALEYEIRRQTEILRRGEKVKQATMGFEEGSGKTYPMRTKEEEADYRYFPEPDLPPVAIPRDWLEEVRRSLPELPWEKEARYRALGIKEKDAEVLAYTPSLARFLDQALPLGLASPQALANWLLADVAGLLHERGLRLEETRLSPEGLARLVGLFERGEVTSRVAKSLLPEVLEGQDPEALVRERGLKVVADEGALKALVAEAIAAMPEAAESVRQGKVKALDALVGQVMRKTRGQARPD 456
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeeee......................................hhhhhhhhhhhhhhhhee...ee..eeee.........eeee......eee.eeee..eeeeeeeeeeee...eeeee..eeeee......eeeeeee.....hhhhhhhhhhhhhhhhhhhh....hhhhh.eeeeeeeee..........eeeeee.hhhhhhhhhhhhhhhhhhhhh........ee.ee....ee...------.....ee......ee.hhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...hhhhhhhhhhhhh.......-....hhhhhhhhhhhhhhhhhhhhhh...-hhhhhhhhhhh..-.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------GATB           ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kfu F   1 MYEAVIGLEVHLHLKTRTKMFCGCRADYFGAEPNTHTCPVCLGLPGALPVPNRVAVEHGLRLALALGAEVPERLVFHRKNYFYPDLPKNYQISQYDLPLGRGGSLPLGERRVRIKRLHLEEDAGKSLHLEGRTLLDLNRAGSPLIELVTEPDLKTPEEARLFLQRIQALVQTLGISDASPEEGKLRADVNVSVRRVGEPLGTKVEIKNLNSFKSVQRALEYEIRRQTEILRRGEKVKQATMGFEEGSGKTYPM------ADYRYFPEPDLPPVAIPRDWLEEVRRSLPELPWEKEARYRALGIKEKDAEVLAYTPSLARFLDQALPLGLASPQALANWLLADVAGLLHERGLRLEETRLSPEGLARLVGLFERGEVTSRVAKSLLPEVLEGQDPEA-xxxxxxxxxxxxxxxxxxxxxxxxxxxxx-xxxxxxxxxxxxx-xxxxxxxxxxxxxxx 659
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250  |    260       270       280       290       300       310       320       330       340       350       360       370       380       390     | 603|||||||613|||||||623|||||| 633|||||||643 ||||||653||||||
                                                                                                                                                                                                                                                                                      253    260                                                                                                                                     396 ||||||609-UNK||618-UNK||627-UNK|||637-UNK|| 647-UNK||656-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                       601-UNK||610-UNK||619-UNK||628-UNK|||638-UNK| |648-UNK||657-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                        602-UNK||611-UNK||620-UNK||629-UNK|||639-UNK ||649-UNK||658-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                         603-UNK| 612-UNK| 621-UNK|  631-UNK| 640-UNK|| 650-UNK| 659-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                          604-UNK  613-UNK  622-UNK   632-UNK  641-UNK|  651-UNK    
                                                                                                                                                                                                                                                                                                                                                                                                                                           605-UNK  614-UNK  623-UNK   633-UNK  642-UNK   652-UNK   
                                                                                                                                                                                                                                                                                                                                                                                                                                            606-UNK  615-UNK  624-UNK   634-UNK  643-UNK   653-UNK  
                                                                                                                                                                                                                                                                                                                                                                                                                                             607-UNK  616-UNK  625-UNK   635-UNK   645-UNK  654-UNK 
                                                                                                                                                                                                                                                                                                                                                                                                                                              608-UNK  617-UNK  626-UNK   636-UNK   646-UNK  655-UNK


Chain G from PDB  Type:PROTEIN  Length:86
 aligned with GATC_THET8 | Q9LCX4 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:86
                                    11        21        31        41        51        61        71        81      
           GATC_THET8     2 ELSPELLRKLETLAKIRLSPEEEALLLQDLKRILDFVDALPRVEEGGAEEALGRLREDEPRPSLPQAEALALAPEAEDGFFRVPPV  87
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh.........................hhhhhhh....ee..eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 3kfu G   3 ELSPELLRKLETLAKIRLSPEEEALLLQDLKRILDFVDALPRVEEGGAEEALGRLREDEPRPSLPQAEALALAPEAEDGFFRVPPV  88
                                    12        22        32        42        52        62        72        82      


Chain H from PDB  Type:PROTEIN  Length:467
 aligned with GATA_THET8 | Q9LCX3 from UniProtKB/Swiss-Prot  Length:471

    Alignment length:467
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       
           GATA_THET8     2 LAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRELGLSVREVSWPSLPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEATARAHLKAPLG 468
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------Amidase-3kfuH01 H:19-448                                                                                                                                                                                                                                                                                                                                                                                                                      -------------------- Pfam domains (1)
           Pfam domains (2) -----------------Amidase-3kfuH02 H:19-448                                                                                                                                                                                                                                                                                                                                                                                                                      -------------------- Pfam domains (2)
         Sec.struct. author hhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.eeee....hhhhhh..........eeeee.........................hhhhhhhhh...eeeeee..hhhhh.........................hhhhhhhhhh....eeeeee....hhhhhhhh..eeee...................eeeeee.hhhhhhhhhhhhh...........................eeeee.hhh...hhhhhhhhhhhhhhhhh...eeeee...hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhh..hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh....eeeee.............hhhhhhhhhh.hhhhhhhh..eeeeeeee....eeeeeee....hhhhhhhhhhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------------------------------------------------------------------------------------------------------------------------AMIDASES  PDB: H:139-170        ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kfu H   2 LAHEIRARVARGEVSPLEVAQAYLKRVQELDPGLGAFLSLNERLLEEAEAVDPGLPLAGLVVAVKDNIATRGLRTTAGSRLLENFVPPYEATAVARLKALGALVLGKTNLDEFGMGSSTEHSAFFPTKNPFDPDRVPGGSSGGSAAALAADLAPLALGSDTGGSVRQPAAFCGVYGLKPTYGRVSRFGLIAYASSLDQIGPMARSVRDLALLMDAAAGPDPLDATSLDLPPRFQEALEGPLPPLRLGVVREALAGNSPGVERALEEALKVFRELGLSVREVSWPSLPQALAAYYILAPAEASSNLARYDGTLYGRRAAGEEVEGMMEATRALFGLEVKRRVLVGTFVLSSGYYEAYYGRAQAFRRRLKAEAQALFREVDLLLLPTTPHPAFPFGARRDPLAMYREDLYTVGANLTGLPALSFPAGFEGHLPVGLQLLAPWGEDERLLRAALAFEEATARAHLKAPLG 468
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       


Chain I from PDB  Type:PROTEIN  Length:444
 aligned with GATB_THET8 | Q9LCX2 from UniProtKB/Swiss-Prot  Length:469

    Alignment length:464
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461    
           GATB_THET8     2 YEAVIGLEVHLHLKTRTKMFCGCRADYFGAEPNTHTCPVCLGLPGALPVPNRVAVEHGLRLALALGAEVPERLVFHRKNYFYPDLPKNYQISQYDLPLGRGGSLPLGERRVRIKRLHLEEDAGKSLHLEGRTLLDLNRAGSPLIELVTEPDLKTPEEARLFLQRIQALVQTLGISDASPEEGKLRADVNVSVRRVGEPLGTKVEIKNLNSFKSVQRALEYEIRRQTEILRRGEKVKQATMGFEEGSGKTYPMRTKEEEADYRYFPEPDLPPVAIPRDWLEEVRRSLPELPWEKEARYRALGIKEKDAEVLAYTPSLARFLDQALPLGLASPQALANWLLADVAGLLHERGLRLEETRLSPEGLARLVGLFERGEVTSRVAKSLLPEVLEGQDPEALVRERGLKVVADEGALKALVAEAIAAMPEAAESVRQGKVKALDALVGQVMRKTRGQARPDLVRRLLLEA 465
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -GatB_N-3kfuI03 I:3-283                                                                                                                                                                                                                                                                   -----------------------------------GatB_Yqey-3kfuI01 I:319-602                                                   -------      --------------- -------- ---------------- -------------- Pfam domains (1)
           Pfam domains (2) -GatB_N-3kfuI04 I:3-283                                                                                                                                                                                                                                                                   -----------------------------------GatB_Yqey-3kfuI02 I:319-602                                                   -------      --------------- -------- ---------------- -------------- Pfam domains (2)
         Sec.struct. author ..eeeeeeeeee......................................hhhhhhhhhhhhhhhhee...ee..eeee.........eeee......eee.eeee..eeeeeeeeeeee...eeeee..eeeee......eeeeeee.....hhhhhhhhhhhhhhhhhhhh....hhhhh.eeeeeeeee.-----....eeeeee.hhhhhhhhhhhhhhhhhhhhh........ee.ee....ee....-----.....ee......ee.hhhhhhhhhh....hhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhh...hhhhhhhhhhhhh....-.........------...............-........-................-.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------GATB           -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kfu I   2 YEAVIGLEVHLHLKTRTKMFCGCRADYFGAEPNTHTCPVCLGLPGALPVPNRVAVEHGLRLALALGAEVPERLVFHRKNYFYPDLPKNYQISQYDLPLGRGGSLPLGERRVRIKRLHLEEDAGKSLHLEGRTLLDLNRAGSPLIELVTEPDLKTPEEARLFLQRIQALVQTLGISDASPEEGKLRADVNVSVR-----LGTKVEIKNLNSFKSVQRALEYEIRRQTEILRRGEKVKQATMGFEEGSGKTYPMR-----ADYRYFPEPDLPPVAIPRDWLEEVRRSLPELPWEKEARYRALGIKEKDAEVLAYTPSLARFLDQALPLGLASPQALANWLLADVAGLLHERGLRLEETRLSPEGLARLVGLFERGEVTSRVAKSLLPEVLEGQD-xxxxxxxxx------xxxxxxxxxxxxxxx-xxxxxxxx-xxxxxxxxxxxxxxxx-xxxxxxxxxxxxxx 671
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191  |    201       211       221       231       241       251  |    261       271       281       291       301       311       321       331       341       351       361       371       381       391 | ||||607||     617|||||||627||| |||637|| ||||647|||||||||-|||||||667||||
                                                                                                                                                                                                                          194   200                                                   254   260                                                                                                                                  393 ||||||609-UNK  ||||||624-UNK|| 634-UNK| |644-UNK||653-UNK|||663-UNK||||
                                                                                                                                                                                                                                                                                                                                                                                                                                   601-UNK|||     616-UNK||625-UNK| |635-UNK ||645-UNK||654-UNK|||664-UNK|||
                                                                                                                                                                                                                                                                                                                                                                                                                                    602-UNK||      617-UNK||626-UNK ||636-UNK|||646-UNK||655-UNK|||665-UNK||
                                                                                                                                                                                                                                                                                                                                                                                                                                     603-UNK|       618-UNK| 627-UNK|| 637-UNK|| 647-UNK| 656-UNK|| 666-UNK|
                                                                                                                                                                                                                                                                                                                                                                                                                                      604-UNK        619-UNK  628-UNK|  638-UNK|  648-UNK   658-UNK  667-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                       605-UNK        620-UNK  629-UNK   639-UNK   649-UNK   659-UNK  668-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                        606-UNK        621-UNK  630-UNK    641-UNK  650-UNK   660-UNK  669-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                         607-UNK        622-UNK   632-UNK   642-UNK  651-UNK   661-UNK  670-UNK
                                                                                                                                                                                                                                                                                                                                                                                                                                          608-UNK        623-UNK   633-UNK   643-UNK  652-UNK   662-UNK  671-UNK


Chain J from PDB  Type:PROTEIN  Length:83
 aligned with GATC_THET8 | Q9LCX4 from UniProtKB/Swiss-Prot  Length:89

    Alignment length:86
                                    11        21        31        41        51        61        71        81      
           GATC_THET8     2 ELSPELLRKLETLAKIRLSPEEEALLLQDLKRILDFVDALPRVEEGGAEEALGRLREDEPRPSLPQAEALALAPEAEDGFFRVPPV  87
               SCOP domains -------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----------------Glu-tRNAGln-3kfuJ01 J:20-85                                       --- Pfam domains (1)
           Pfam domains (2) -----------------Glu-tRNAGln-3kfuJ02 J:20-85                                       --- Pfam domains (2)
         Sec.struct. author ..hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhh......---................hhhhhhh....ee..eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 3kfu J   3 ELSPELLRKLETLAKIRLSPEEEALLLQDLKRILDFVDALPRVEE---EEALGRLREDEPRPSLPQAEALALAPEAEDGFFRVPPV  88
                                    12        22        32        42    |   52        62        72        82      
                                                                       47  51                                     


Chain K from PDB  Type:RNA  Length:74
                                                                                                          
                 3kfu K   1 UCCGCGGUAGCUCAGGGuAGAGCAGCCGGCUGUUAACCGGUAGGUCGCAGGuuCGAGUCCUGCCCGCGGAGCCA  76
                                    10    || |22        32        42        52 ||     62        72    
                                         15| |                                54-5MU                  
                                          18 |                                 55-PSU                 
                                            20-H2U                                                    


Chain L from PDB  Type:RNA  Length:74
                                                                                                          
                 3kfu L   1 UCCGCGGUAGCUCAGGGuAGAGCAGCCGGCUGUUAACCGGUAGGUCGCAGGuuCGAGUCCUGCCCGCGGAGCCA  76
                                    10    || |22        32        42        52 ||     62        72    
                                         15| |                                54-5MU                  
                                          18 |                                 55-PSU                 
                                            20-H2U                                                    


Chain M from PDB  Type:RNA  Length:71
                                                                                                       
                 3kfu M   1 UCCGCGGUAGCUCAGGGuAGAGCAGCCGGCUGUUAACCGGUAGGUCGCAGGuuCGAGUCCUGCCCGCGGAG  73
                                    10    || |22        32        42        52 ||     62        72 
                                         15| |                                54-5MU               
                                          18 |                                 55-PSU              
                                            20-H2U                                                 


Chain N from PDB  Type:RNA  Length:71
                                                                                                       
                 3kfu N   1 UCCGCGGUAGCUCAGGGuAGAGCAGCCGGCUGUUAACCGGUAGGUCGCAGGuuCGAGUCCUGCCCGCGGAG  73
                                    10    || |22        32        42        52 ||     62        72 
                                         15| |                                54-5MU               
                                          18 |                                 55-PSU              
                                            20-H2U
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KFU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KFU)

(-) Pfam Domains  (4, 8)

Asymmetric/Biological Unit
(-)
Clan: GatB_YqeY (3)
(-)
Clan: no clan defined [family: Amidase] (17)
(-)
Clan: no clan defined [family: GatB_N] (2)
(-)
Clan: no clan defined [family: Glu-tRNAGln] (1)

(-) Gene Ontology  (14, 29)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (SYDND_THET8 | Q5SIC2)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0004812    aminoacyl-tRNA ligase activity    Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
    GO:0004815    aspartate-tRNA ligase activity    Catalysis of the reaction: ATP + L-aspartate + tRNA(Asp) = AMP + diphosphate + L-aspartyl-tRNA(Asp).
    GO:0050560    aspartate-tRNA(Asn) ligase activity    Catalysis of the reaction: tRNA(Asx) + L-aspartate + ATP = aspartyl-tRNA(Asx) + diphosphate + AMP.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006422    aspartyl-tRNA aminoacylation    The process of coupling aspartate to aspartyl-tRNA, catalyzed by aspartyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
    GO:0006418    tRNA aminoacylation for protein translation    The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain E,H   (GATA_THET8 | Q9LCX3)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016884    carbon-nitrogen ligase activity, with glutamine as amido-N-donor    Catalysis of the transfer of the amide nitrogen of glutamine to a variety of substrates. GATases catalyze two separate reactions at two active sites, which are located either on a single polypeptide chain or on different subunits. In the glutaminase reaction, glutamine is hydrolyzed to glutamate and ammonia, which is added to an acceptor substrate in the synthase reaction.
    GO:0050567    glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity    Catalysis of the reaction: L-glutamine + glutamyl-tRNA(Gln) + ATP = L-glutamate + glutaminyl-tRNA(Gln) + phosphate + ADP.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.

Chain F,I   (GATB_THET8 | Q9LCX2)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016884    carbon-nitrogen ligase activity, with glutamine as amido-N-donor    Catalysis of the transfer of the amide nitrogen of glutamine to a variety of substrates. GATases catalyze two separate reactions at two active sites, which are located either on a single polypeptide chain or on different subunits. In the glutaminase reaction, glutamine is hydrolyzed to glutamate and ammonia, which is added to an acceptor substrate in the synthase reaction.
    GO:0050567    glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity    Catalysis of the reaction: L-glutamine + glutamyl-tRNA(Gln) + ATP = L-glutamate + glutaminyl-tRNA(Gln) + phosphate + ADP.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.

Chain G,J   (GATC_THET8 | Q9LCX4)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0050567    glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity    Catalysis of the reaction: L-glutamine + glutamyl-tRNA(Gln) + ATP = L-glutamate + glutaminyl-tRNA(Gln) + phosphate + ADP.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006450    regulation of translational fidelity    Any process that modulates the ability of the translational apparatus to interpret the genetic code.
    GO:0006412    translation    The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    5MU  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    H2U  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    PSU  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    UNK  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    ZN  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Glu A:99 - Glu A:100   [ RasMol ]  
    Glu B:99 - Glu B:100   [ RasMol ]  
    Glu C:99 - Glu C:100   [ RasMol ]  
    Glu D:99 - Glu D:100   [ RasMol ]  
    Gly E:140 - Ser E:141   [ RasMol ]  
    Gly F:197 - Glu F:198   [ RasMol ]  
    Gly H:140 - Ser H:141   [ RasMol ]  
    Leu E:242 - Pro E:243   [ RasMol ]  
    Leu H:242 - Pro H:243   [ RasMol ]  
    Met F:1 - Tyr F:2   [ RasMol ]  
    Pro E:243 - Pro E:244   [ RasMol ]  
    Pro H:243 - Pro H:244   [ RasMol ]  
    Unk F:645 - Unk F:646   [ RasMol ]  
    Unk I:643 - Unk I:644   [ RasMol ]  
    Val F:196 - Gly F:197   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym./Biol. Unit PNG format | Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3kfu
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  GATA_THET8 | Q9LCX3
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  GATB_THET8 | Q9LCX2
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  GATC_THET8 | Q9LCX4
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
  SYDND_THET8 | Q5SIC2
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  6.3.5.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  GATA_THET8 | Q9LCX3
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  GATB_THET8 | Q9LCX2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  GATC_THET8 | Q9LCX4
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  SYDND_THET8 | Q5SIC2
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SYDND_THET8 | Q5SIC2: 1n9w

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3KFU)