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(-) Description

Title :  X-RAY CRYSTAL STRUCTURE OF A DCUN1 DOMAIN-CONTAINING PROTEIN FROM GALDIERIA SULFURARIA
 
Authors :  E. S. Burgie, C. A. Bingman, G. N. Phillips Jr. , Center For Eukaryoti Structural Genomics (Cesg)
Date :  26 Oct 09  (Deposition) - 01 Dec 09  (Release) - 29 Jun 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Cullin, Neddylation, Dcun1, Dcn-1, E3, Center For Eukaryotic Structural Genomics, Psi, Protein Structure Initiative, Cesg, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. S. Burgie, C. A. Bingman, S. Makino, G. E. Wesenberg, X. Pan, B. G. Fox G. N. Phillips
Structural Architecture Of Galdieria Sulphuraria Dcn1L.
Proteins V. 79 1329 2011
PubMed-ID: 21387409  |  Reference-DOI: 10.1002/PROT.22937

(-) Compounds

Molecule 1 - GALIERIA SULFURARIA DCUN1 DOMAIN-CONTAINING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: CELL-FREE SYNTHESIS
    Expression System Plasmid: PEU-HIS-FLEXI
    Expression System Vector Type: PLASMID
    Organism Common: RED ALGAE
    Organism Scientific: GALDIERIA SULPHURARIA
    Organism Taxid: 130081
    Other Details: WHEAT GERM CELL FREE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 5)

Asymmetric/Biological Unit (4, 5)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CSO1Mod. Amino AcidS-HYDROXYCYSTEINE
3MSE1Mod. Amino AcidSELENOMETHIONINE
4SO41Ligand/IonSULFATE ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:85 , ARG A:88 , HOH A:254BINDING SITE FOR RESIDUE SO4 A 200
2AC2SOFTWAREARG A:152 , HOH A:258BINDING SITE FOR RESIDUE ACT A 201
3AC3SOFTWARELYS A:6 , GLU A:67 , LEU A:135BINDING SITE FOR RESIDUE ACT A 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KEV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3KEV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
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Chain A from PDB  Type:PROTEIN  Length:184
 aligned with D1MPT4_GALSU | D1MPT4 from UniProtKB/TrEMBL  Length:199

    Alignment length:189
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183         
         D1MPT4_GALSU     4 ADKKAILELFQTYKEPLGNYIGAEGLQRLFEDIQVDPSDVVTLVLAWKLKASSTCEFSEKEFVEGLANLQVDSLEKLKRKLSSLRKEIEDPSKFRAFYQFVFQYSKEPSQRSLPAETAMALWDVLLRGRFSLLDSWLEFLKNNTHSISRDTWNLLYDFSQLSEKDLSDYDENGAWPVLIDDFVKWLKHE 192
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhh.....eehhhhhhhhhhhh.....hhhhhhhhhhh.......eehhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhh....hhhhhhhhhhhh....hhhhhhhhhhhhh.--.......---..hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kev A   4 ADKKAILELFQTYKEPLGNYIGAEGLQRLFEDIQVDPSDVVTLVLAWKLKASSTcEFSEKEFVEGLANLQVDSLEKLKRKLSSLRKEIEDPSKFRAFYQFVFQYSKEPSQRSLPAETAmALWDVLLRGRFSLLDSWLEFLKNNTHSISRDTWNLLYDFSQL--KDLSDYD---AWPVLIDDFVKWLKHE 192
                                    13        23        33        43        53    |   63        73        83        93       103       113       123       133       143       153       163|  |   173   |   183         
                                                                                 58-CSO                                                         122-MSE                                   164  |   173 177               
                                                                                                                                                                                             167
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KEV)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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