Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
(-)Biological Unit 5
(-)Biological Unit 6
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)
Image Biological Unit 5
Biological Unit 5  (Jmol Viewer)
Image Biological Unit 6
Biological Unit 6  (Jmol Viewer)

(-) Description

Title :  THE CRYSTAL STRUCTURE OF THIOREDOXIN PROTEIN FROM GEOBACTER METALLIREDUCENS
 
Authors :  Z. Zhang, S. K. Burley, S. Swaminathan, New York Sgx Research Cente Structural Genomics (Nysgxrc)
Date :  21 Oct 09  (Deposition) - 10 Nov 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Sgx, Thioredoxin Protein, Psi, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Redox-Active Center, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Zhang, S. K. Burley, S. Swaminathan
The Crystal Structure Of Thioredoxin Protein From Geobacter Metallireducens
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - THIOREDOXIN FAMILY PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: BC-PSGX3 (BC)
    Expression System Strain: BL21 (DE3)-CODON +RIL -STRATAGENE
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: 11211K2, GMET_2452
    Organism Scientific: GEOBACTER METALLIREDUCENS GS-15
    Organism Taxid: 269799
    Strain: GS-15 / ATCC 53774 / DSM 7210

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 36)

Asymmetric Unit (2, 36)
No.NameCountTypeFull Name
1MSE30Mod. Amino AcidSELENOMETHIONINE
2SO46Ligand/IonSULFATE ION
Biological Unit 1 (2, 6)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 2 (2, 6)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 3 (2, 6)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 4 (2, 6)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 5 (2, 6)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION
Biological Unit 6 (2, 6)
No.NameCountTypeFull Name
1MSE5Mod. Amino AcidSELENOMETHIONINE
2SO41Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:63 , ILE A:93 , ASP A:94 , GLU A:95 , LYS A:120 , LYS D:46 , ASP D:49BINDING SITE FOR RESIDUE SO4 A 1
2AC2SOFTWARETRP B:63 , ASP B:94 , GLU B:95 , LYS B:120 , LYS E:46 , ASP E:49BINDING SITE FOR RESIDUE SO4 B 2
3AC3SOFTWARELYS A:46 , ASP A:49 , TRP C:63 , ASP C:94 , GLU C:95 , LYS C:120BINDING SITE FOR RESIDUE SO4 C 6
4AC4SOFTWARELYS C:46 , ASP C:49 , TRP D:63 , ILE D:93 , GLU D:95 , LYS D:120BINDING SITE FOR RESIDUE SO4 D 3
5AC5SOFTWARETRP E:63 , ASP E:94 , GLU E:95 , LYS E:120 , LYS F:46 , ASP F:49BINDING SITE FOR RESIDUE SO4 E 4
6AC6SOFTWARELYS B:46 , ASP B:49 , TRP F:63 , ASP F:94 , GLU F:95 , LYS F:120BINDING SITE FOR RESIDUE SO4 F 5

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:64 -A:67
2B:64 -B:67
3C:64 -C:67
4D:64 -D:67
5E:64 -E:67
6F:64 -F:67

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Val A:131 -Pro A:132
2Val B:131 -Pro B:132
3Val C:131 -Pro C:132
4Val D:131 -Pro D:132
5Val E:131 -Pro E:132
6Val F:131 -Pro F:132

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KCM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KCM)

(-) Exons   (0, 0)

(no "Exon" information available for 3KCM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:139
 aligned with Q39SU7_GEOMG | Q39SU7 from UniProtKB/TrEMBL  Length:170

    Alignment length:139
                                    36        46        56        66        76        86        96       106       116       126       136       146       156         
         Q39SU7_GEOMG    27 VEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNE 165
               SCOP domains d3kcma_ A: automated matches                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhh....eee...hhhhhhhh.....eeeee.....eeeeee......hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kcm A  27 LEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSmmRLNAAmAGKPFRmLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAmEWDHPEVIAFLNNE 165
                                    36        46        56        66       |76    |   86 |      96       106       116       126       136       146    |  156         
                                                                          74-MSE  |     88-MSE                                                        151-MSE          
                                                                           75-MSE |                                                                                    
                                                                                 81-MSE                                                                                


Chain B from PDB  Type:PROTEIN  Length:141
 aligned with Q39SU7_GEOMG | Q39SU7 from UniProtKB/TrEMBL  Length:170

    Alignment length:141
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166 
         Q39SU7_GEOMG    27 VEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELS 167
               SCOP domains d3kcmb_ B: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhh....eee...hhhhhhh......eeeee.....eeeeee......hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kcm B  27 LEENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSmmRLNAAmAGKPFRmLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAmEWDHPEVIAFLNNELS 167
                                    36        46        56        66       |76    |   86 |      96       106       116       126       136       146    |  156       166 
                                                                          74-MSE  |     88-MSE                                                        151-MSE            
                                                                           75-MSE |                                                                                      
                                                                                 81-MSE                                                                                  


Chain C from PDB  Type:PROTEIN  Length:139
 aligned with Q39SU7_GEOMG | Q39SU7 from UniProtKB/TrEMBL  Length:170

    Alignment length:139
                                    37        47        57        67        77        87        97       107       117       127       137       147       157         
         Q39SU7_GEOMG    28 EENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNEL 166
               SCOP domains d3kcmc_ C: automated matches                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhh....eee...hhhhhhh......eeeee.....eeeeee......hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kcm C  28 EENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSmmRLNAAmAGKPFRmLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAmEWDHPEVIAFLNNEL 166
                                    37        47        57        67      ||77   |    87|       97       107       117       127       137       147   |   157         
                                                                         74-MSE  |     88-MSE                                                        151-MSE           
                                                                          75-MSE |                                                                                     
                                                                                81-MSE                                                                                 


Chain D from PDB  Type:PROTEIN  Length:142
 aligned with Q39SU7_GEOMG | Q39SU7 from UniProtKB/TrEMBL  Length:170

    Alignment length:142
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168  
         Q39SU7_GEOMG    29 ENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKAR 170
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhh....eee...hhhhhhh......eeeee.....eeeeee......hhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kcm D  29 ENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSmmRLNAAmAGKPFRmLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAmEWDHPEVIAFLNNELSKAR 170
                                    38        48        58        68     || 78  |     88        98       108       118       128       138       148  |    158       168  
                                                                        74-MSE  |     88-MSE                                                        151-MSE               
                                                                         75-MSE |                                                                                         
                                                                               81-MSE                                                                                     


Chain E from PDB  Type:PROTEIN  Length:141
 aligned with Q39SU7_GEOMG | Q39SU7 from UniProtKB/TrEMBL  Length:170

    Alignment length:141
                                    38        48        58        68        78        88        98       108       118       128       138       148       158       168 
         Q39SU7_GEOMG    29 ENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKA 169
               SCOP domains d3kcme_ E: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhh....eee...hhhhhhh......eeeee.....eeeeee......hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kcm E  29 ENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSmmRLNAAmAGKPFRmLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAmEWDHPEVIAFLNNELSKA 169
                                    38        48        58        68     || 78  |     88        98       108       118       128       138       148  |    158       168 
                                                                        74-MSE  |     88-MSE                                                        151-MSE              
                                                                         75-MSE |                                                                                        
                                                                               81-MSE                                                                                    


Chain F from PDB  Type:PROTEIN  Length:138
 aligned with Q39SU7_GEOMG | Q39SU7 from UniProtKB/TrEMBL  Length:170

    Alignment length:138
                                    38        48        58        68        78        88        98       108       118       128       138       148       158        
         Q39SU7_GEOMG    29 ENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNEL 166
               SCOP domains d3kcmf_ F: automated matches                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) AhpC-TSA-3kcmF01 F:29-146                                                                                             -------------------- Pfam domains (1)
           Pfam domains (2) AhpC-TSA-3kcmF02 F:29-146                                                                                             -------------------- Pfam domains (2)
           Pfam domains (3) AhpC-TSA-3kcmF03 F:29-146                                                                                             -------------------- Pfam domains (3)
           Pfam domains (4) AhpC-TSA-3kcmF04 F:29-146                                                                                             -------------------- Pfam domains (4)
           Pfam domains (5) AhpC-TSA-3kcmF05 F:29-146                                                                                             -------------------- Pfam domains (5)
           Pfam domains (6) AhpC-TSA-3kcmF06 F:29-146                                                                                             -------------------- Pfam domains (6)
         Sec.struct. author .......eee.....eee.hhhh..eeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhh....eee...hhhhhhh......eeeee.....eeeeee......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kcm F  29 ENPAPDFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSmmRLNAAmAGKPFRmLCVSIDEGGKVAVEEFFRKTGFTLPVLLDADKRVGKLYGTTGVPETFVIDRHGVILKKVVGAmEWDHPEVIAFLNNEL 166
                                    38        48        58        68     || 78  |     88        98       108       118       128       138       148  |    158        
                                                                        74-MSE  |     88-MSE                                                        151-MSE           
                                                                         75-MSE |                                                                                     
                                                                               81-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KCM)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: Thioredoxin (367)

(-) Gene Ontology  (6, 6)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q39SU7_GEOMG | Q39SU7)
molecular function
    GO:0016209    antioxidant activity    Inhibition of the reactions brought about by dioxygen (O2) or peroxides. Usually the antioxidant is effective because it can itself be more easily oxidized than the substance protected. The term is often applied to components that can trap free radicals, thereby breaking the chain reaction that normally leads to extensive biological damage.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0045454    cell redox homeostasis    Any process that maintains the redox environment of a cell or compartment within a cell.
    GO:0098869    cellular oxidant detoxification    Any process carried out at the cellular level that reduces or removes the toxicity superoxide radicals or hydrogen peroxide.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Val A:131 - Pro A:132   [ RasMol ]  
    Val B:131 - Pro B:132   [ RasMol ]  
    Val C:131 - Pro C:132   [ RasMol ]  
    Val D:131 - Pro D:132   [ RasMol ]  
    Val E:131 - Pro E:132   [ RasMol ]  
    Val F:131 - Pro F:132   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]
    Biological Unit 5  [ Jena3D ]
    Biological Unit 6  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format | Biol. Unit 4 PNG format | Biol. Unit 5 PNG format | Biol. Unit 6 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3kcm
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q39SU7_GEOMG | Q39SU7
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q39SU7_GEOMG | Q39SU7
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3KCM)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3KCM)