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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE PROTEIN CINA WITH UNKNOWN FUNCTION FROM THERMOPLASMA ACIDOPHILUM
 
Authors :  R. Zhang, H. Li, J. Bearden, A. Joachimiak, Midwest Center For Struc Genomics (Mcsg)
Date :  20 Oct 09  (Deposition) - 15 Dec 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Cina, Protein Structure Initiative, Mcsg, Psi-2, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Zhang, H. Li, J. Bearden, A. Joachimiak
The Crystal Structure Of The Protein Cina With Unknown Function From Thermoplasma Acidophilum
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN TA0487
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PMCSG19
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Organism Scientific: THERMOPLASMA ACIDOPHILUM
    Organism Taxid: 2303
    Strain: DSM1728

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL B:8 , GLU B:11 , ASP B:44 , GLY B:68 , ASP B:74 , ASP B:75 , HOH B:206BINDING SITE FOR RESIDUE SO4 B 170

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:122 -A:137
2B:122 -B:137

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3KBQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KBQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KBQ)

(-) Exons   (0, 0)

(no "Exon" information available for 3KBQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:164
 aligned with Y487_THEAC | Q9HKV6 from UniProtKB/Swiss-Prot  Length:256

    Alignment length:167
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       
           Y487_THEAC     2 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDMTVEGFAKCIGQDLRIDEDALAMIKKKYGQADLTPQRLKMAKIPPSCRPIENPVGTAPGLICAVGGKKVIILPGVPKEMEALLKAMEKDIII 168
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeehhhhhh....hhhhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhhhhh.eeeee.........hhhhhhhhhhh...eehhhhhhhhhhhhh---.hhhhhh..ee...eeee........eeeeee..eeeeee..hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kbq A   1 KNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDMTVEGFAKCIGQDLRIDEDALAMIKKKYG---LTPQRLKMAKIPPSCRPIENPVGTAPGLICAVGGKKVIILPGVPKEMEALLKAMEKDIII 167
                                    10        20        30        40        50        60        70        80        90       100   |   110       120       130       140       150       160       
                                                                                                                                 104 108                                                           


Chain B from PDB  Type:PROTEIN  Length:169
 aligned with Y487_THEAC | Q9HKV6 from UniProtKB/Swiss-Prot  Length:256

    Alignment length:169
                              1                                                                                                                                                                      
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158         
           Y487_THEAC     - --MKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDMTVEGFAKCIGQDLRIDEDALAMIKKKYGQADLTPQRLKMAKIPPSCRPIENPVGTAPGLICAVGGKKVIILPGVPKEMEALLKAMEKDII 167
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------MoCF_biosynth-3kbqB01 B:4-166                                                                                                                                       Pfam domains (1)
           Pfam domains (2) ------MoCF_biosynth-3kbqB02 B:4-166                                                                                                                                       Pfam domains (2)
         Sec.struct. author ....eeeeeeehhhhhh....hhhhhhhhhhhhhh..eeeeeeee..hhhhhhhhhhhhhhhh.eeeee.........hhhhhhhhhh....eehhhhhhhhhhhhh....hhhhhh..ee...eeee........eeeeee..eeeeee..hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kbq B  -2 SNAKNASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRRGFVVMDDLDEIGWAFRVALEVSDLVVSSGGLGPTFDDMTVEGFAKCIGQDLRIDEDALAMIKKKYGQADLTPQRLKMAKIPPSCRPIENPVGTAPGLICAVGGKKVIILPGVPKEMEALLKAMEKDII 166
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KBQ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KBQ)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: MoCF_biosynth] (31)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3KBQ)

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