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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ALR8543 PROTEIN IN COMPLEX WITH GERANYLGERANYL MONOPHOSPHATE AND MAGNESIUM ION FROM NOSTOC SP. PCC 7120, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET NSR141
 
Authors :  F. Forouhar, H. Neely, J. Seetharaman, X. Xiao, C. Ciccosanti, D. Patel R. L. Belote, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelio L. Tong, J. F. Hunt, Northeast Structural Genomics Consortium (N
Date :  20 Oct 09  (Deposition) - 17 Nov 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.41
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Alpha-Beta Protein. , Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  F. Forouhar, H. Neely, J. Seetharaman, X. Xiao, C. Ciccosanti, D. Patel, R. L. Belote, J. K. Everett, R. Nair, T. B. Acton, B. Rost, G. T. Montelione, L. Tong, J. F. Hunt
Northeast Structural Genomics Consortium Target Nsr141
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ALR8543 PROTEIN
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidBL21
    Expression System StrainBL21(DE3)+ MAGIC
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    GeneALR8543
    Organism ScientificNOSTOC SP.
    Organism Taxid103690
    StrainPCC 7120

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)AB  
Biological Unit 2 (1x)  CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 36)

Asymmetric Unit (3, 36)
No.NameCountTypeFull Name
1GR04Ligand/IonGERANYLGERANYL MONOPHOSPHATE
2MG2Ligand/IonMAGNESIUM ION
3MSE30Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 17)
No.NameCountTypeFull Name
1GR02Ligand/IonGERANYLGERANYL MONOPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3MSE15Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 17)
No.NameCountTypeFull Name
1GR02Ligand/IonGERANYLGERANYL MONOPHOSPHATE
2MG-1Ligand/IonMAGNESIUM ION
3MSE15Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:25 , GLY A:26 , PHE A:28 , ILE A:31 , ASN A:39 , LEU A:44 , LEU A:112 , LEU A:116 , HIS A:120 , GLU A:136 , GLU A:140 , ASP A:150 , PHE A:153 , LYS A:159 , ASN A:160BINDING SITE FOR RESIDUE GR0 A 301
2AC2SOFTWARETYR B:25 , GLY B:26 , PHE B:28 , SER B:35 , ASN B:39 , LEU B:44 , VAL B:47 , LEU B:116 , HIS B:120 , GLU B:140 , TYR B:143 , LEU B:147 , ASP B:150 , PHE B:153 , LEU B:156 , LYS B:159 , ASN B:160 , HOH B:234BINDING SITE FOR RESIDUE GR0 B 301
3AC3SOFTWAREHIS B:120 , HIS B:124 , GLU B:136BINDING SITE FOR RESIDUE MG B 302
4AC4SOFTWARETYR C:25 , GLY C:26 , PHE C:28 , ILE C:31 , SER C:35 , ASN C:39 , LEU C:44 , VAL C:47 , LEU C:112 , LEU C:116 , HIS C:120 , GLU C:140 , ASP C:150 , LEU C:156 , LYS C:159 , ASN C:160 , HOH C:250BINDING SITE FOR RESIDUE GR0 C 301
5AC5SOFTWARETYR D:25 , GLY D:26 , ILE D:31 , ASN D:39 , LEU D:44 , VAL D:47 , LEU D:112 , ALA D:113 , LEU D:116 , HIS D:120 , GLU D:140 , ASP D:150 , LEU D:156 , LYS D:159 , ASN D:160 , HOH D:228BINDING SITE FOR RESIDUE GR0 D 301
6AC6SOFTWAREHIS D:120 , HIS D:124 , GLU D:136BINDING SITE FOR RESIDUE MG D 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3KB4)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ile A:148 -Pro A:149
2Ile B:148 -Pro B:149
3Ile C:148 -Pro C:149
4Ile D:148 -Pro D:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3KB4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3KB4)

(-) Exons   (0, 0)

(no "Exon" information available for 3KB4)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:211
 aligned with Q8YJY7_NOSS1 | Q8YJY7 from UniProtKB/TrEMBL  Length:217

    Alignment length:216
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210      
         Q8YJY7_NOSS1     1 MIETITQSQETAILESFLELVKSPYGNFASIGKLSHVLNDPDTLQKVVAVLSLTPQGKQAFEDRPMLGKIDLEQLHQLPNYTLGYMYADHMIRNQLTPPPVNENVNHPFMFLAAHLGETHDIWHVVTGCDTDKPGEVKLEAFYTAQLIPDRLFLALLAKNLLKTAMYEVELCEQILDGLTQGWMMGKRAKPLFGIEWNKLWETPLEELQTSLNIVP 216
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhh.....hhhhhhhhhhhhh....-----...hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh......hhhhh...hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kb4 A   1 mIETITQSQETAILESFLELVKSPYGNFASIGKLSHVLNDPDTLQKVVAVLSLTPQGKQAFEDRPmLGKIDLEQLHQLPNYTLGYmYADHmIRNQLTP-----NVNHPFmFLAAHLGETHDIWHVVTGCDTDKPGEVKLEAFYTAQLIPDRLFLALLAKNLLKTAmYEVELCEQILDGLTQGWmmGKRAKPLFGIEWNKLWETPLEELQTSLNIVP 216
                            |       10        20        30        40        50        60     |  70        80     |  90|      | -   |   110       120       130       140       150       160     | 170       180   ||  190       200       210      
                            |                                                               66-MSE              86-MSE|     98   104     |                                                     166-MSE           184-MSE                            
                            1-MSE                                                                                    91-MSE            110-MSE                                                                    185-MSE                           

Chain B from PDB  Type:PROTEIN  Length:212
 aligned with Q8YJY7_NOSS1 | Q8YJY7 from UniProtKB/TrEMBL  Length:217

    Alignment length:212
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214  
         Q8YJY7_NOSS1     5 ITQSQETAILESFLELVKSPYGNFASIGKLSHVLNDPDTLQKVVAVLSLTPQGKQAFEDRPMLGKIDLEQLHQLPNYTLGYMYADHMIRNQLTPPPVNENVNHPFMFLAAHLGETHDIWHVVTGCDTDKPGEVKLEAFYTAQLIPDRLFLALLAKNLLKTAMYEVELCEQILDGLTQGWMMGKRAKPLFGIEWNKLWETPLEELQTSLNIVP 216
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhh.....hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh......hhhhh...hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kb4 B   5 ITQSQETAILESFLELVKSPYGNFASIGKLSHVLNDPDTLQKVVAVLSLTPQGKQAFEDRPmLGKIDLEQLHQLPNYTLGYmYADHmIRNQLTPPPVNENVNHPFmFLAAHLGETHDIWHVVTGCDTDKPGEVKLEAFYTAQLIPDRLFLALLAKNLLKTAmYEVELCEQILDGLTQGWmmGKRAKPLFGIEWNKLWETPLEELQTSLNIVP 216
                                    14        24        34        44        54        64 |      74        84 |    | 94       104     | 114       124       134       144       154       164 |     174       184|      194       204       214  
                                                                                        66-MSE              86-MSE|                110-MSE                                                 166-MSE           184-MSE                            
                                                                                                                 91-MSE                                                                                       185-MSE                           

Chain C from PDB  Type:PROTEIN  Length:211
 aligned with Q8YJY7_NOSS1 | Q8YJY7 from UniProtKB/TrEMBL  Length:217

    Alignment length:216
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210      
         Q8YJY7_NOSS1     1 MIETITQSQETAILESFLELVKSPYGNFASIGKLSHVLNDPDTLQKVVAVLSLTPQGKQAFEDRPMLGKIDLEQLHQLPNYTLGYMYADHMIRNQLTPPPVNENVNHPFMFLAAHLGETHDIWHVVTGCDTDKPGEVKLEAFYTAQLIPDRLFLALLAKNLLKTAMYEVELCEQILDGLTQGWMMGKRAKPLFGIEWNKLWETPLEELQTSLNIVP 216
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhh.....hhhhhhhhhhhhh....-----...hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh......hhhhh...hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3kb4 C   1 mIETITQSQETAILESFLELVKSPYGNFASIGKLSHVLNDPDTLQKVVAVLSLTPQGKQAFEDRPmLGKIDLEQLHQLPNYTLGYmYADHmIRNQLTP-----NVNHPFmFLAAHLGETHDIWHVVTGCDTDKPGEVKLEAFYTAQLIPDRLFLALLAKNLLKTAmYEVELCEQILDGLTQGWmmGKRAKPLFGIEWNKLWETPLEELQTSLNIVP 216
                            |       10        20        30        40        50        60     |  70        80     |  90|      | -   |   110       120       130       140       150       160     | 170       180   ||  190       200       210      
                            1-MSE                                                           66-MSE              86-MSE|     98   104     |                                                     166-MSE           184-MSE                            
                                                                                                                     91-MSE            110-MSE                                                                    185-MSE                           

Chain D from PDB  Type:PROTEIN  Length:212
 aligned with Q8YJY7_NOSS1 | Q8YJY7 from UniProtKB/TrEMBL  Length:217

    Alignment length:212
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214  
         Q8YJY7_NOSS1     5 ITQSQETAILESFLELVKSPYGNFASIGKLSHVLNDPDTLQKVVAVLSLTPQGKQAFEDRPMLGKIDLEQLHQLPNYTLGYMYADHMIRNQLTPPPVNENVNHPFMFLAAHLGETHDIWHVVTGCDTDKPGEVKLEAFYTAQLIPDRLFLALLAKNLLKTAMYEVELCEQILDGLTQGWMMGKRAKPLFGIEWNKLWETPLEELQTSLNIVP 216
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Coq4-3kb4D01 D:5-216                                                                                                                                                                                                 Pfam domains (1)
           Pfam domains (2) Coq4-3kb4D02 D:5-216                                                                                                                                                                                                 Pfam domains (2)
           Pfam domains (3) Coq4-3kb4D03 D:5-216                                                                                                                                                                                                 Pfam domains (3)
           Pfam domains (4) Coq4-3kb4D04 D:5-216                                                                                                                                                                                                 Pfam domains (4)
         Sec.struct. author .hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh......hhhhhh.....hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh......hhhhh...hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3kb4 D   5 ITQSQETAILESFLELVKSPYGNFASIGKLSHVLNDPDTLQKVVAVLSLTPQGKQAFEDRPmLGKIDLEQLHQLPNYTLGYmYADHmIRNQLTPPPVNENVNHPFmFLAAHLGETHDIWHVVTGCDTDKPGEVKLEAFYTAQLIPDRLFLALLAKNLLKTAmYEVELCEQILDGLTQGWmmGKRAKPLFGIEWNKLWETPLEELQTSLNIVP 216
                                    14        24        34        44        54        64 |      74        84 |    | 94       104     | 114       124       134       144       154       164 |     174       184|      194       204       214  
                                                                                        66-MSE              86-MSE|                110-MSE                                                 166-MSE           184-MSE                            
                                                                                                                 91-MSE                                                                                       185-MSE                           

   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3KB4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3KB4)

(-) Pfam Domains  (1, 4)

Asymmetric Unit

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (Q8YJY7_NOSS1 | Q8YJY7)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006744    ubiquinone biosynthetic process    The chemical reactions and pathways resulting in the formation of ubiquinone, a lipid-soluble electron-transporting coenzyme.

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