3K9W - JenaLib

Title :   CRYSTAL STRUCTURE OF PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE FROM BURKHOLDERIA PSEUDOMALLEI WITH HYDROLYZED 3'-DEPHOSPHO COENZYME A

Authors :   Seattle Structural Genomics Center For Infectious Disease (S

Date :   16 Oct 09 (Deposition) - 03 Nov 09 (Release) - 30 Oct 13 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.60

Chains :   Asym. Unit : A
Biol. Unit 1: A  (6x)

Keywords :   Niaid, Ssgcid, Seattle Structural Genomics Center For Infectious Disease, Coenzyme A, Coa, Biosynthesis, Hydrolysis, Atp-Binding, Coenzyme A Biosynthesis, Nucleotide-Binding, Nucleotidyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   T. E. Edwards, D. J. Leibly, J. Bhandari, J. B. Statnekov, I. Phan, S. H. Dieterich, J. Abendroth, B. L. Staker, W. C. Van Voorhis, P. J. Myler, L. J. Stewart
Structures Of Phosphopantetheine Adenylyltransferase From Burkholderia Pseudomallei.
Acta Crystallogr. , Sect. F V. 67 1032 2011
PubMed-ID: 21904046 | Reference-DOI: 10.1107/S1744309111004349
(for further references see the PDB file header)

Compounds

Molecule 1 - PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE
	Chains	:	A
	EC Number	:	2.7.7.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector Type	:	AVA0421
	Gene	:	COAD, BURPS1710B_0748
	Organism Scientific	:	BURKHOLDERIA PSEUDOMALLEI
	Organism Taxid	:	320372
	Strain	:	1710B
	Synonym	:	PANTETHEINE-PHOSPHATE ADENYLYLTRANSFERASE, PPAT, DEPHOSPHO- COA PYROPHOSPHORYLASE

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 5)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:8 , THR A:9 , PHE A:10 , HIS A:17 , ALA A:36 , LYS A:41 , GLY A:71 , LEU A:72 , LEU A:73 , ARG A:87 , TYR A:97 , ASN A:105 , ILE A:130 , GLU A:133 , LEU A:137 , HOH A:184 , HOH A:214 , HOH A:232 , HOH A:262 , HOH A:266 , HOH A:301 , HOH A:306	BINDING SITE FOR RESIDUE 4PS A 167
2	AC2	SOFTWARE	GLY A:16 , ARG A:90 , PRO A:119 , TYR A:123 , ILE A:126 , ACT A:170 , SO4 A:171 , HOH A:197 , HOH A:306	BINDING SITE FOR RESIDUE ADE A 168
3	AC3	SOFTWARE	ASP A:37 , PHE A:45 , SER A:46 , LEU A:47 , GLU A:48 , ARG A:50 , GLU A:155 , ALA A:158 , ALA A:159 , HOH A:225	BINDING SITE FOR RESIDUE PG4 A 169
4	AC4	SOFTWARE	SER A:127 , GLY A:128 , THR A:129 , ADE A:168 , HOH A:193	BINDING SITE FOR RESIDUE ACT A 170
5	AC5	SOFTWARE	ARG A:90 , SER A:93 , ASP A:94 , TYR A:97 , GLU A:98 , ADE A:168 , HOH A:307	BINDING SITE FOR RESIDUE SO4 A 171

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:163
 aligned with COAD_BURP1 | Q3JW91 from UniProtKB/Swiss-Prot  Length:166

    Alignment length:163
                              1                                                                                                                                                                
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158   
           COAD_BURP1     - --MVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSRAKKPFFSLEERLKIANEVLGHYPNVKVMGFTGLLKDFVRANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVEKWLTEKVAAMA 161
               SCOP domains d3k9wa_ A: automated matches                                                                                                                                        SCOP domains
               CATH domains 3k9wA00 A:-1-161 Tyrosyl-Transfer RNA Synthetase , subunit E, domain 1                                                                                              CATH domains
               Pfam domains ------CTP_transf_2-3k9wA01 A:5-134                                                                                                      --------------------------- Pfam domains
         Sec.struct. author ....eeeeee.....hhhhhhhhhhhhhhh.eeeeeee.hhhhh...hhhhhhhhhhhhhh....eeeeee..hhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhh...eeeee..hhhhh..hhhhhhhhhhh........hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k9w A  -1 GSMVVAVYPGTFDPLTRGHEDLVRRASSIFDTLVVGVADSRAKKPFFSLEERLKIANEVLGHYPNVKVMGFTGLLKDFVRANDARVIVRGLRAVSDFEYEFQMAGMNRYLLPDVETMFMTPSDQYQFISGTIVREIAQLGGDVSKFVFPSVEKWLTEKVAAMA 161
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 1)

Pfam Domains (1, 1)

Gene Ontology (9, 9)

Asymmetric Unit(hide GO term definitions)

Chain A (COAD_BURP1 | Q3JW91)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0004595	pantetheine-phosphate adenylyltransferase activity	Catalysis of the reaction: ATP + pantetheine 4'-phosphate = 3'-dephospho-CoA + diphosphate.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0009058	biosynthetic process	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
	GO:0015937	coenzyme A biosynthetic process	The chemical reactions and pathways resulting in the formation of coenzyme A, 3'-phosphoadenosine-(5')diphospho(4')pantatheine, an acyl carrier in many acylation and acyl-transfer reactions in which the intermediate is a thiol ester.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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