3K8D - JenaLib

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Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF E. COLI LIPOPOLYSACCHARIDE SPECIFIC CMP-KDO SYNTHETASE IN COMPLEX WITH CTP AND 2-DEOXY-KDO

Authors :   D. J. Heyes, C. W. Levy, P. Lafite, N. S. Scrutton, D. Leys

Date :   14 Oct 09 (Deposition) - 10 Nov 09 (Release) - 05 Dec 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,C  (1x)

Keywords :   Kdsb Synthetase Kdo Complex, Lipopolysaccharide Biosynthesis, Magnesium, Nucleotidyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. J. Heyes, C. Levy, P. Lafite, I. S. Roberts, M. Goldrick, A. V. Stachulski, S. B. Rossington, D. Stanford, S. E. J. Rigby, N. S. Scrutton, D. Leys
Structure-Based Mechanism Of Cmp-2-Keto-3-Deoxymanno-Octulonic Acid Synthetase: Convergent Evolution Of A Sugar-Activating Enzyme With Dna/Rna Polymerases
J. Biol. Chem. V. 284 35514 2009
PubMed-ID: 19815542 | Reference-DOI: 10.1074/JBC.M109.056630

Molecule 1 - 3-DEOXY-MANNO-OCTULOSONATE CYTIDYLYLTRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.7.7.38
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Strain	:	K12
	Synonym	:	CMP-KDO SYNTHETASE, CMP-2-KETO-3-DEOXYOCTULOSONIC ACID SYNTHETASE, CKS

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 12)

No.	Name	Count	Type	Full Name
1	CTP	4	Ligand/Ion	CYTIDINE-5'-TRIPHOSPHATE
2	KDO	4	Ligand/Ion	3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
3	MG	4	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (2, 4)

No.	Name	Count	Type	Full Name
1	CTP	2	Ligand/Ion	CYTIDINE-5'-TRIPHOSPHATE
2	KDO	2	Ligand/Ion	3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	CTP	2	Ligand/Ion	CYTIDINE-5'-TRIPHOSPHATE
2	KDO	2	Ligand/Ion	3-DEOXY-D-MANNO-OCT-2-ULOSONIC ACID
3	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HOH A:250 , HOH A:257 , HOH A:282 , CTP A:1243	BINDING SITE FOR RESIDUE MG A 1242
02	AC2	SOFTWARE	ARG A:15 , GLN A:98 , VAL A:142 , ARG A:157 , HIS A:181 , TYR A:185 , LEU A:209 , GLU A:210 , GLN A:211 , ASP A:235 , HOH A:250 , HOH A:254 , HOH A:258 , HOH A:259 , HOH A:294 , CTP A:1243	BINDING SITE FOR RESIDUE KDO A 1244
03	AC3	SOFTWARE	PRO A:8 , ALA A:9 , ARG A:10 , SER A:13 , THR A:14 , ARG A:15 , LYS A:19 , HIS A:72 , GLN A:73 , SER A:74 , GLY A:75 , ARG A:78 , GLN A:98 , GLY A:99 , ASP A:100 , ASP A:235 , HOH A:253 , HOH A:264 , HOH A:268 , HOH A:269 , HOH A:287 , HOH A:526 , MG A:1242 , KDO A:1244 , ARG D:164	BINDING SITE FOR RESIDUE CTP A 1243
04	AC4	SOFTWARE	HOH B:251 , HOH B:253 , HOH B:279 , CTP B:1243	BINDING SITE FOR RESIDUE MG B 1242
05	AC5	SOFTWARE	ARG B:15 , GLN B:98 , VAL B:142 , ARG B:157 , HIS B:181 , TYR B:185 , LEU B:209 , GLU B:210 , GLN B:211 , ASP B:235 , HOH B:251 , HOH B:259 , HOH B:260 , HOH B:275 , HOH B:294 , CTP B:1243	BINDING SITE FOR RESIDUE KDO B 1244
06	AC6	SOFTWARE	PRO B:8 , ALA B:9 , ARG B:10 , SER B:13 , THR B:14 , ARG B:15 , LYS B:19 , HIS B:72 , GLN B:73 , SER B:74 , GLY B:75 , ARG B:78 , GLN B:98 , GLY B:99 , ASP B:100 , ASP B:235 , HOH B:254 , HOH B:262 , HOH B:264 , HOH B:271 , HOH B:283 , HOH B:536 , MG B:1242 , KDO B:1244 , ARG C:164	BINDING SITE FOR RESIDUE CTP B 1243
07	AC7	SOFTWARE	HOH C:252 , HOH C:257 , HOH C:273 , CTP C:1243	BINDING SITE FOR RESIDUE MG C 1242
08	AC8	SOFTWARE	ARG C:15 , GLN C:98 , VAL C:142 , ARG C:157 , HIS C:181 , TYR C:185 , LEU C:209 , GLU C:210 , GLN C:211 , ASP C:235 , HOH C:250 , HOH C:252 , HOH C:255 , HOH C:325 , CTP C:1243	BINDING SITE FOR RESIDUE KDO C 1244
09	AC9	SOFTWARE	ARG B:164 , PRO C:8 , ALA C:9 , ARG C:10 , SER C:13 , THR C:14 , ARG C:15 , LYS C:19 , HIS C:72 , GLN C:73 , SER C:74 , GLY C:75 , ARG C:78 , GLN C:98 , GLY C:99 , ASP C:100 , ASP C:235 , HOH C:261 , HOH C:263 , HOH C:270 , HOH C:286 , HOH C:288 , HOH C:473 , MG C:1242 , KDO C:1244	BINDING SITE FOR RESIDUE CTP C 1243
10	BC1	SOFTWARE	HOH D:257 , HOH D:258 , HOH D:275 , CTP D:1243	BINDING SITE FOR RESIDUE MG D 1242
11	BC2	SOFTWARE	ARG D:15 , GLN D:98 , VAL D:142 , ARG D:157 , HIS D:181 , TYR D:185 , LEU D:209 , GLU D:210 , GLN D:211 , ASP D:235 , HOH D:256 , HOH D:258 , HOH D:262 , HOH D:331 , HOH D:342 , CTP D:1243	BINDING SITE FOR RESIDUE KDO D 1244
12	BC3	SOFTWARE	ARG A:164 , PRO D:8 , ALA D:9 , ARG D:10 , SER D:13 , THR D:14 , ARG D:15 , LYS D:19 , HIS D:72 , GLN D:73 , SER D:74 , GLY D:75 , ARG D:78 , GLN D:98 , GLY D:99 , ASP D:100 , ASP D:235 , HOH D:264 , HOH D:265 , HOH D:269 , HOH D:278 , HOH D:305 , HOH D:621 , MG D:1242 , KDO D:1244	BINDING SITE FOR RESIDUE CTP D 1243

(no "SS Bond" information available for 3K8D)

Asymmetric Unit

No.	Residues
1	Ile A:160	-	Pro A:161
2	Ile B:160	-	Pro B:161
3	Ile C:160	-	Pro C:161
4	Ile D:160	-	Pro D:161

(no "SAP(SNP)/Variant" information available for 3K8D)

(no "PROSITE Motif" information available for 3K8D)

(no "Exon" information available for 3K8D)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:246
 aligned with KDSB_ECOLI | P04951 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:246
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      
           KDSB_ECOLI     2 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 247
               SCOP domains d3k8da_ A: automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains 3k8dA00 A:2-247 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.........hhhh.ee..eehhhhhhhhhhhh...eeeeee.hhhhhhhhhhh..eeee......hhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhhhh....eeeeeee..hhhhhh.....eeee.....eeeee......hhhhhhhh........eee..eeeeehhhhhhhhhh..hhhhhhhh..hhhhhhh...eeeee..........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k8d A   2 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241

Chain B from PDB  Type:PROTEIN  Length:246
 aligned with KDSB_ECOLI | P04951 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:246
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      
           KDSB_ECOLI     2 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 247
               SCOP domains d3k8db_ B: automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains 3k8dB00 B:2-247 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeee........hhhh.ee..eehhhhhhhhhhhh...eeeeee.hhhhhhhhhhh..eeee......hhhhhhhhhhhhhh.....eeeee.......hhhhhhhhhhhhhhh...eeeeeee..hhhhhh.....eeee.....eeeee......hhhhhhhh........eee..eeeeehhhhhhhhhh..hhhhhhhh..hhhhhhh...eeeee..........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k8d B   2 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241

Chain C from PDB  Type:PROTEIN  Length:246
 aligned with KDSB_ECOLI | P04951 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:246
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      
           KDSB_ECOLI     2 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 247
               SCOP domains d3k8dc_ C: automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains 3k8dC00 C:2-247 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.........hhhh.ee..eehhhhhhhhhhhh...eeeeee.hhhhhhhhhhh..eeee......hhhhhhhhhhhhh......eeeee.......hhhhhhhhhhhhhh....eeeeeee..hhhhhh.....eeee.....eeeee......hhhhhhhh........eee..eeeeehhhhhhhhhh..hhhhhhhh..hhhhhhh....eeee..........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k8d C   2 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241

Chain D from PDB  Type:PROTEIN  Length:246
 aligned with KDSB_ECOLI | P04951 from UniProtKB/Swiss-Prot  Length:248

    Alignment length:246
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241      
           KDSB_ECOLI     2 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 247
               SCOP domains d3k8dd_ D: automated matches                                                                                                                                                                                                                           SCOP domains
               CATH domains 3k8dD00 D:2-247 Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A                                                                                                                                                                           CATH domains
           Pfam domains (1) --CTP_transf_3-3k8dD01 D:4-221                                                                                                                                                                                              -------------------------- Pfam domains (1)
           Pfam domains (2) --CTP_transf_3-3k8dD02 D:4-221                                                                                                                                                                                              -------------------------- Pfam domains (2)
           Pfam domains (3) --CTP_transf_3-3k8dD03 D:4-221                                                                                                                                                                                              -------------------------- Pfam domains (3)
           Pfam domains (4) --CTP_transf_3-3k8dD04 D:4-221                                                                                                                                                                                              -------------------------- Pfam domains (4)
         Sec.struct. author ..eeeee.........hhhh.ee..eehhhhhhhhhhhh...eeeeee.hhhhhhhhhhh..eeee......hhhhhhhhhhhhh......eeeee.......hhhhhhhhhhhhhhh...eeeeeee..hhhhhh.....eeee.....eeeee......hhhhhhhh........eee..eeeeehhhhhhhhhh..hhhhhhhh..hhhhhhh...eeeee..........hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k8d D   2 SFVVIIPARYASTRLPGKPLVDINGKPMIVHVLERARESGAERIIVATDHEDVARAVEAAGGEVCMTRADHQSGTERLAEVVEKCAFSDDTVIVNVQGDEPMIPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSRATIPWDRDRFAEGLETVGDNFLRHLGIYGYRAGFIRRYVNWQPSPLEHIEMLEQLRVLWYGEKIHVAVAQEVPGTGVDTPEDLERVRAEM 247
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Nucleotide-diphospho-sugar transferases (408)

Superfamily: Nucleotide-diphospho-sugar transferases (408)

Family: Cytidylytransferase (43)

Protein domain: automated matches (7)

Escherichia coli [TaxId: 562] (1)

1a	d3k8da_	A:
1b	d3k8db_	B:
1c	d3k8dc_	C:
1d	d3k8dd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A (231)

Homologous Superfamily: Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A (231)

Escherichia coli. Organism_taxid: 562. Strain: k12 (1)

1a	3k8dA00	A:2-247
1b	3k8dB00	B:2-247
1c	3k8dC00	C:2-247
1d	3k8dD00	D:2-247

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: GT-A (172)

Family: CTP_transf_3 (9)

Escherichia coli (strain K12) (3)

1a	CTP_transf_3-3k8dD01	D:4-221
1b	CTP_transf_3-3k8dD02	D:4-221
1c	CTP_transf_3-3k8dD03	D:4-221
1d	CTP_transf_3-3k8dD04	D:4-221

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (KDSB_ECOLI | P04951)

molecular function
	GO:0008690	3-deoxy-manno-octulosonate cytidylyltransferase activity	Catalysis of the reaction: CTP + 3-deoxy-D-manno-octulosonate = diphosphate + CMP-3-deoxy-D-manno-octulosonate.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0033468	CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	The chemical reactions and pathways resulting in the formation of CMP-keto-3-deoxy-D-manno-octulosonic acid, a substance composed of the acidic sugar 3-deoxy-D-manno-octulosonic acid in glycosidic linkage with cytidine monophosphate.
	GO:0019294	keto-3-deoxy-D-manno-octulosonic acid biosynthetic process	The chemical reactions and pathways resulting in the formation of keto-3-deoxy-D-manno-octulosonic acid, an acidic sugar present in lipopolysaccharides of the outer membranes of some Gram-negative bacteria.
	GO:0009103	lipopolysaccharide biosynthetic process	The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
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		Ile B:160 - Pro B:161	[ RasMol ]
		Ile C:160 - Pro C:161	[ RasMol ]
		Ile D:160 - Pro D:161	[ RasMol ]

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	3k8d
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		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	KDSB_ECOLI \| P04951	:	1vh1 3k8e

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 12)

Sites (12, 12)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (1, 4)

Pfam Domains (1, 4)

Gene Ontology (10, 10)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File