3K5J - JenaLib

Title :   CRYSTAL STRUCTURE OF PUTATIVE SUFU (SUPPRESSOR OF FUSED PROTEIN) HOMOLOG (YP_208451.1) FROM NEISSERIA GONORRHOEAE FA 1090 AT 1.40 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   07 Oct 09 (Deposition) - 26 Jan 10 (Release) - 23 Mar 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.40

Chains :   Asym./Biol. Unit : A

Keywords :   Yp_208451. 1, Putative Sufu (Suppressor Of Fused Protein) Homolog, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   D. Das, R. D. Finn, P. Abdubek, T. Astakhova, H. L. Axelrod, C. Bakolitsa, X. Cai, D. Carlton, C. Chen, H. J. Chiu, M. Chiu, T. Clayton, M. C. Deller, L. Duan, K. Ellrott, C. L. Farr, J. Feuerhelm, J. C. Grant, A. Grzechnik, G. W. Han, L. Jaroszewski, K. K. Jin, H. E. Klock, M. W. Knuth, P. Kozbial, S. S. Krishna, A. Kumar, W. W. Lam, D. Marciano, M. D. Miller, A. T. Morse, E. Nigoghossian, A. Nopakun, L. Okach, C. Puckett, R. Reyes, H. J. Tien, C. B. Trame, H. Van Den Bedem, D. Weekes, T. Wooten, Q. Xu, A. Yeh, J. Zhou, K. O. Hodgson, J. Wooley, M. A. Elsliger, A. M. Deacon, A. Godzik, S. A. Lesley, I. A. Wilson
The Crystal Structure Of A Bacterial Sufu-Like Protein Defines A Novel Group Of Bacterial Proteins That Are Simila To The N-Terminal Domain Of Human Sufu.
Protein Sci. V. 19 2131 2010
PubMed-ID: 20836087 | Reference-DOI: 10.1002/PRO.497

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 9)

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:0 , MSE A:1 , ASP A:2 , TYR A:3 , GLN A:60 , HOH A:222 , HOH A:234 , HOH A:301 , HOH A:375	BINDING SITE FOR RESIDUE SO4 A 183
2	AC2	SOFTWARE	TRP A:15 , LYS A:16 , HIS A:17 , HIS A:18 , HOH A:213 , HOH A:215	BINDING SITE FOR RESIDUE SO4 A 184
3	AC3	SOFTWARE	TRP A:25 , GLY A:28 , ARG A:29 , THR A:143 , GLN A:144 , THR A:145 , SER A:176 , HOH A:270 , HOH A:287 , HOH A:355	BINDING SITE FOR RESIDUE SO4 A 185
4	AC4	SOFTWARE	ASN A:102 , HIS A:115 , ARG A:147 , HOH A:228 , HOH A:336 , HOH A:407 , HOH A:418	BINDING SITE FOR RESIDUE SO4 A 186
5	AC5	SOFTWARE	TYR A:122 , PHE A:162 , ASP A:163 , HOH A:292 , HOH A:314 , HOH A:351 , HOH A:405 , HOH A:416	BINDING SITE FOR RESIDUE GOL A 187

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:182
 aligned with Q5F6Z8_NEIG1 | Q5F6Z8 from UniProtKB/TrEMBL  Length:182

    Alignment length:182
                             1                                                                                                                                                                                    
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179  
         Q5F6Z8_NEIG1     - -MDYNQTVLSHLQKFWKHHDIKGFTWTLGRIVEELPDFQVFQVIPNHEDEPWVYVSSGIGQFLGQEFFIISPFETPEHIETLAMLASASMHYPDQFQLGKTVNIGRPWVEQSSFRHFLISLPYPYGQELEYMDNVRFFWLLPITQTERLFLNTHSVEELETKFDEAGIDYLDINRASTVWQA 181
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -----------------------------SUFU-3k5jA01 A:29-176                                                                                                                               ----- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh....eeee....hhhhhhh...eeeee........eeeeee.hhhhhheeeeeee....hhhhhhhhhhhhhhhhhhhhh....eee............eeeee.....hhhhhee..eeeeeeeeehhhhhhhh...hhhhhhhhhhhhh............... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k5j A   0 GmDYNQTVLSHLQKFWKHHDIKGFTWTLGRIVEELPDFQVFQVIPNHEDEPWVYVSSGIGQFLGQEFFIISPFETPEHIETLAmLASASmHYPDQFQLGKTVNIGRPWVEQSSFRHFLISLPYPYGQELEYmDNVRFFWLLPITQTERLFLNTHSVEELETKFDEAGIDYLDINRASTVWQA 181
                             |       9        19        29        39        49        59        69        79   |    89        99       109       119       129 |     139       149       159       169       179  
                             |                                                                                83-MSE |                                       131-MSE                                              
                             1-MSE                                                                                  89-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (0, 0)

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