Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE BINDING COMPONENT OF ABC TRANSPORTER FROM WOLINELLA SUCCINOGENES DSM 1740 COMPLEXED WITH LYSINE
 
Authors :  V. N. Malashkevich, R. Toro, C. Morano, J. M. Sauder, S. K. Burley, S. C. A York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  06 Oct 09  (Deposition) - 03 Nov 09  (Release) - 24 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.62
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E  (1x)
Biol. Unit 2:  A,B,C,D,E,F  (1x)
Biol. Unit 3:  A,B,C,D,E,F  (1x)
Keywords :  Structural Genomics, Crystal Structure, Protein Structure Initiative, New York Structural Genomix Research Consortium, Nysgxrc, Abc Transporter, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. N. Malashkevich, R. Toro, C. Morano, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Putative Binding Component Of Abc Transporter From Wolinella Succinogenes Dsm 1740 Complexed With Lysine
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BINDING COMPONENT OF ABC TRANSPORTER
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: BC-PSGX3(BC)
    Expression System Strain: BL21(DE3)CODON+RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: CAE09431.1, WS0279
    Organism Scientific: WOLINELLA SUCCINOGENES
    Organism Taxid: 844
    Strain: DSM 1740

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABCDE 
Biological Unit 2 (1x): ABCDEF
Biological Unit 3 (1x): ABCDEF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 42)

Asymmetric Unit (2, 42)
No.NameCountTypeFull Name
1LYS6Mod. Amino AcidLYSINE
2MSE36Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 35)
No.NameCountTypeFull Name
1LYS5Mod. Amino AcidLYSINE
2MSE30Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 42)
No.NameCountTypeFull Name
1LYS6Mod. Amino AcidLYSINE
2MSE36Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 42)
No.NameCountTypeFull Name
1LYS6Mod. Amino AcidLYSINE
2MSE36Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:10 , TYR A:13 , TRP A:51 , GLY A:69 , THR A:71 , ARG A:76 , VAL A:122 , SER A:123 , GLU A:143 , PHE A:160 , ASP A:161 , HOH A:513BINDING SITE FOR RESIDUE LYS A 501
2AC2SOFTWAREGLU B:10 , TRP B:51 , GLY B:69 , MSE B:70 , THR B:71 , ARG B:76 , LYS B:119 , VAL B:122 , SER B:123 , GLU B:143 , PHE B:160 , ASP B:161BINDING SITE FOR RESIDUE LYS B 501
3AC3SOFTWAREGLU C:10 , TYR C:13 , TRP C:51 , GLY C:69 , MSE C:70 , THR C:71 , ARG C:76 , VAL C:122 , SER C:123 , GLU C:143 , ASP C:161BINDING SITE FOR RESIDUE LYS C 501
4AC4SOFTWAREGLU D:10 , TYR D:13 , TRP D:51 , GLY D:69 , THR D:71 , ARG D:76 , VAL D:122 , SER D:123 , GLU D:143BINDING SITE FOR RESIDUE LYS D 501
5AC5SOFTWAREGLU E:10 , TYR E:13 , TRP E:51 , GLY E:69 , THR E:71 , ARG E:76 , VAL E:122 , SER E:123 , GLU E:143 , PHE E:160 , ASP E:161BINDING SITE FOR RESIDUE LYS E 501
6AC6SOFTWAREGLU F:10 , TYR F:13 , TRP F:51 , GLY F:69 , MSE F:70 , THR F:71 , ARG F:76 , LYS F:119 , VAL F:122 , SER F:123 , GLU F:143 , ASP F:161BINDING SITE FOR RESIDUE LYS F 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3K4U)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Leu A:14 -Pro A:15
2Leu B:14 -Pro B:15
3Leu C:14 -Pro C:15
4Leu D:14 -Pro D:15
5Leu E:14 -Pro E:15
6Leu F:14 -Pro F:15

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3K4U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3K4U)

(-) Exons   (0, 0)

(no "Exon" information available for 3K4U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
 aligned with Q7MAG0_WOLSU | Q7MAG0 from UniProtKB/TrEMBL  Length:267

    Alignment length:235
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262     
         Q7MAG0_WOLSU    33 KRGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEKIQ 267
               SCOP domains d3k4ua_ A: automated matches                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee........eee...eeehhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhh....ee......hhhhhh..ee....eee.eeeeee........hhhhhh....eeeee..hhhhhhhhhhh...eeeee.hhhhhhhhhhh...eeeeeehhhhhhhhhhh....eeee......eee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh-. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k4u A   1 LRGELRVGLEPGYLPFEmKDKKGNVIGFDVDLAREmAKAmGVKLKLVPTSWDGLIPGLVTEKFDIIISGmTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADmFIFDLPFNVAFmAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEK-K 501
                                    10       |20        30     |  40        50        60        70        80        90       100       110       120       130       140       150      |160       170       180       190       200       210       220       230  | |
                                            18-MSE            36-MSE                            70-MSE                                                                                157-MSE     169-MSE                                                         233 |
                                                                  40-MSE                                                                                                                                                                                            501


Chain B from PDB  Type:PROTEIN  Length:234
 aligned with Q7MAG0_WOLSU | Q7MAG0 from UniProtKB/TrEMBL  Length:267

    Alignment length:234
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262    
         Q7MAG0_WOLSU    33 KRGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEKI 266
               SCOP domains d3k4ub_ B: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee........ee.....eehhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhh....ee......hhhhhh..ee....eee.eeeeee........hhhhhh....eeeee..hhhhhhhhhhh...eeeee.hhhhhhhhhhh....eeeeehhhhhhhhhhh....eeee......eee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k4u B   1 LRGELRVGLEPGYLPFEmKDKKGNVIGFDVDLAREmAKAmGVKLKLVPTSWDGLIPGLVTEKFDIIISGmTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADmFIFDLPFNVAFmAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEKK 501
                                    10       |20        30     |  40        50        60        70        80        90       100       110       120       130       140       150      |160       170       180       190       200       210       220       230  ||
                                            18-MSE            36-MSE                            70-MSE                                                                                157-MSE     169-MSE                                                         233|
                                                                  40-MSE                                                                                                                                                                                           501


Chain C from PDB  Type:PROTEIN  Length:234
 aligned with Q7MAG0_WOLSU | Q7MAG0 from UniProtKB/TrEMBL  Length:267

    Alignment length:234
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262    
         Q7MAG0_WOLSU    33 KRGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEKI 266
               SCOP domains d3k4uc_ C: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee........ee.....eehhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh....ee........hhhh.eee....eee.eeeeee........hhhhhh....eeeee..hhhhhhhhhhh...eeeee.hhhhhhhhhhh....eeeeehhhhhhhhhhh....eeee......eee..eee..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k4u C   1 LRGELRVGLEPGYLPFEmKDKKGNVIGFDVDLAREmAKAmGVKLKLVPTSWDGLIPGLVTEKFDIIISGmTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADmFIFDLPFNVAFmAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEKK 501
                                    10       |20        30     |  40        50        60        70        80        90       100       110       120       130       140       150      |160       170       180       190       200       210       220       230  ||
                                            18-MSE            36-MSE                            70-MSE                                                                                157-MSE     169-MSE                                                         233|
                                                                  40-MSE                                                                                                                                                                                           501


Chain D from PDB  Type:PROTEIN  Length:234
 aligned with Q7MAG0_WOLSU | Q7MAG0 from UniProtKB/TrEMBL  Length:267

    Alignment length:234
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262    
         Q7MAG0_WOLSU    33 KRGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEKI 266
               SCOP domains d3k4ud_ D: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee........ee.....eehhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh....ee........hhhhh.ee....eee.eeeeee........hhhhhh....eeeee..hhhhhhhhhhh...eeeee.hhhhhhhhhhh....eeeeehhhhhhhhhhh....eeee......eee..ee...hhhhhhhhhhhhhhhh..hhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k4u D   1 LRGELRVGLEPGYLPFEmKDKKGNVIGFDVDLAREmAKAmGVKLKLVPTSWDGLIPGLVTEKFDIIISGmTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADmFIFDLPFNVAFmAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEKK 501
                                    10       |20        30     |  40        50        60        70        80        90       100       110       120       130       140       150      |160       170       180       190       200       210       220       230  ||
                                            18-MSE            36-MSE                            70-MSE                                                                                157-MSE     169-MSE                                                         233|
                                                                  40-MSE                                                                                                                                                                                           501


Chain E from PDB  Type:PROTEIN  Length:235
 aligned with Q7MAG0_WOLSU | Q7MAG0 from UniProtKB/TrEMBL  Length:267

    Alignment length:240
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266
         Q7MAG0_WOLSU    27 TLNEIIKRGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEKI 266
               SCOP domains d3     k4ue_ E: automated matches                                                                                                                                                                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..-----..eeeeee.................hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhh....ee......hhhhhh..ee....eee.eeeeee........hhhhhh....eeeee..hhhhhhhhhhh...eeeee.hhhhhhhhhhh....eeeeehhhhhhhhhhhhhh.eeee......eee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k4u E   0 SL-----RGELRVGLEPGYLPFEmKDKKGNVIGFDVDLAREmAKAmGVKLKLVPTSWDGLIPGLVTEKFDIIISGmTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADmFIFDLPFNVAFmAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEKK 501
                             |     | 4        14   |    24        34 |   |  44        54        64     |  74        84        94       104       114       124       134       144       154  |    164    |  174       184       194       204       214       224       501
                             1     2              18-MSE            36-MSE                            70-MSE                                                                                157-MSE     169-MSE                                                         233|
                                                                        40-MSE                                                                                                                                                                                           501


Chain F from PDB  Type:PROTEIN  Length:234
 aligned with Q7MAG0_WOLSU | Q7MAG0 from UniProtKB/TrEMBL  Length:267

    Alignment length:234
                                    42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262    
         Q7MAG0_WOLSU    33 KRGELRVGLEPGYLPFEMKDKKGNVIGFDVDLAREMAKAMGVKLKLVPTSWDGLIPGLVTEKFDIIISGMTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLPFNVAFMAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEKI 266
               SCOP domains d3k4uf_ F: automated matches                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) ----SBP_bac_3-3k4uF01 F:5-227                                                                                                                                                                                                      ------- Pfam domains (1)
           Pfam domains (2) ----SBP_bac_3-3k4uF02 F:5-227                                                                                                                                                                                                      ------- Pfam domains (2)
           Pfam domains (3) ----SBP_bac_3-3k4uF03 F:5-227                                                                                                                                                                                                      ------- Pfam domains (3)
           Pfam domains (4) ----SBP_bac_3-3k4uF04 F:5-227                                                                                                                                                                                                      ------- Pfam domains (4)
           Pfam domains (5) ----SBP_bac_3-3k4uF05 F:5-227                                                                                                                                                                                                      ------- Pfam domains (5)
           Pfam domains (6) ----SBP_bac_3-3k4uF06 F:5-227                                                                                                                                                                                                      ------- Pfam domains (6)
         Sec.struct. author ....eeeee........ee.....eehhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhh....ee........hhhhh.ee....eee.eeeeee..................eeeee..hhhhhhhhhhh...eeeee.hhhhhhhhhhh....eeeeehhhhhhhhhhh....ee........eee..ee...hhhhhhhhhhhhhhhhh.hhhhhhhhhhhh.hhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k4u F   1 LRGELRVGLEPGYLPFEmKDKKGNVIGFDVDLAREmAKAmGVKLKLVPTSWDGLIPGLVTEKFDIIISGmTISQERNLRVNFVEPYIVVGQSLLVKKGLEKGVKSYKDLDKPELTLVTKFGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADmFIFDLPFNVAFmAQKGQGYLVHLDTSLTYEPLGWAIKKGDPDFLNWLNHFLAQIKHDGSYDELYERWFVDTKWLEKK 501
                                    10       |20        30     |  40        50        60        70        80        90       100       110       120       130       140       150      |160       170       180       190       200       210       220       230  ||
                                            18-MSE            36-MSE                            70-MSE                                                                                157-MSE     169-MSE                                                         233|
                                                                  40-MSE                                                                                                                                                                                           501
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 6)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3K4U)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: PBP (391)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q7MAG0_WOLSU | Q7MAG0)
molecular function
    GO:0004970    ionotropic glutamate receptor activity    Catalysis of the transmembrane transfer of an ion by a channel that opens when glutamate has been bound by the channel complex or one of its constituent parts.
    GO:0005215    transporter activity    Enables the directed movement of substances (such as macromolecules, small molecules, ions) into, out of or within a cell, or between cells.
biological process
    GO:0035235    ionotropic glutamate receptor signaling pathway    A series of molecular signals initiated by glutamate binding to a glutamate receptor on the surface of the target cell, followed by the movement of ions through a channel in the receptor complex. Ends with regulation of a downstream cellular process, e.g. transcription.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    LYS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MSE  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Leu A:14 - Pro A:15   [ RasMol ]  
    Leu B:14 - Pro B:15   [ RasMol ]  
    Leu C:14 - Pro C:15   [ RasMol ]  
    Leu D:14 - Pro D:15   [ RasMol ]  
    Leu E:14 - Pro E:15   [ RasMol ]  
    Leu F:14 - Pro F:15   [ RasMol ]  
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Asym. Unit - sites PNG format | Biol. Unit 1 PNG format | Biol. Unit 1 - sites PNG format | Biol. Unit 2 PNG format | Biol. Unit 3 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  3k4u
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  Q7MAG0_WOLSU | Q7MAG0
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/TrEMBL
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  Q7MAG0_WOLSU | Q7MAG0
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 3K4U)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3K4U)