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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE TRANSCRIPTIONAL REGULATOR LACI FROM BACILLUS CEREUS SUBSP. CYTOTOXIS NVH 391-98
 
Authors :  V. N. Malashkevich, R. Toro, C. Morano, J. M. Sauder, S. K. Burley, S. C. A York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  05 Oct 09  (Deposition) - 10 Nov 09  (Release) - 24 Oct 12  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A (1x),B (1x)
Keywords :  Structural Genomics, Crystal Structure, Protein Structure Initiative, New York Structural Genomix Research Consortium, Nysgxrc, Dna- Binding, Transcription, Transcription Regulation, Psi-2, New York Sgx Research Center For Structural Genomics, Transcription Regulator (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. N. Malashkevich, R. Toro, C. Morano, J. M. Sauder, S. K. Burley, S. C. Almo
Crystal Structure Of Putative Transcriptional Regulator Lac From Bacillus Cereus Subsp. Cytotoxis Nvh 391-98
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE TRANSCRIPTIONAL REGULATOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: BC-PSGX3(BC)
    Expression System Strain: BL21(DE3)CODON+RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BCER98_2711, Q2E7G6
    Organism Scientific: BACILLUS CYTOTOXICUS NVH 391-98
    Organism Taxid: 315749
    Strain: CYTOTOXIS NVH 391-98

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (1x): A (1x)B (1x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric Unit (2, 14)
No.NameCountTypeFull Name
1MAL2Ligand/IonMALTOSE
2MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 14)
No.NameCountTypeFull Name
1MAL2Ligand/IonMALTOSE
2MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 7)
No.NameCountTypeFull Name
1MAL1Ligand/IonMALTOSE
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:25 , PHE A:27 , PHE A:28 , LEU A:76 , TYR A:77 , SER A:78 , ILE A:98 , GLY A:99 , ASP A:112 , ASN A:113 , ASN A:115 , VAL A:145 , ARG A:149 , PHE A:174 , ASP A:200 , ASN A:228 , LEU A:250BINDING SITE FOR RESIDUE MAL A 501
2AC2SOFTWAREPHE B:27 , ILE B:98 , GLY B:99 , ASP B:112 , ASN B:113 , ASN B:115 , VAL B:145 , ARG B:149 , PHE B:174 , ASP B:200 , ASN B:228BINDING SITE FOR RESIDUE MAL B 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3K4H)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Val A:218 -Pro A:219
2Ser A:237 -Pro A:238
3Val B:218 -Pro B:219

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3K4H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3K4H)

(-) Exons   (0, 0)

(no "Exon" information available for 3K4H)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:282
 aligned with D0VWZ8_BACCN | D0VWZ8 from UniProtKB/TrEMBL  Length:292

    Alignment length:282
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286  
         D0VWZ8_BACCN     7 TTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRENDRIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNALLSEIASPPLSTVDVNIYQLGYEAAKALVDKVENAESTAKCIIIPHKLLKRQTCEGHH 288
               SCOP domains d3k4ha_ A: automated matches                                                                                                                                                                                                                                                               SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee...hhhhhh..hhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhh....eeee......hhhhhhhhhh...eeee...........eee.hhhhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhhh....hhh.eee...hhhhhhhhhhhhhh......eeee.hhhhhhhhhhhhhhh........eeeee..hhhhhhh....eeee.hhhhhhhhhhhhhhhhhhhh.....eee...eee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k4h A   7 TTKTLGLVmPSSASKAFQNPFFPEVIRGISSFAHVEGYALYmSTGETEEEIFNGVVKmVQGRQIGGIILLYSRENDRIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGmSDALKLADIVLPKEYILHFDFSRESGQQAVEELmGLQQPPTAImATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNALLSEIASPPLSTVDVNIYQLGYEAAKALVDKVENAESTAKCIIIPHKLLKRQTCEGHH 288
                                    16        26        36        46 |      56       |66        76        86        96       106       116       126       136       146      |156       166       176       186|      196|      206       216       226       236       246       256       266       276       286  
                                   15-MSE                           48-MSE          64-MSE                                                                                  153-MSE                           187-MSE   197-MSE                                                                                       


Chain B from PDB  Type:PROTEIN  Length:278
 aligned with D0VWZ8_BACCN | D0VWZ8 from UniProtKB/TrEMBL  Length:292

    Alignment length:278
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274        
         D0VWZ8_BACCN     5 NQTTKTLGLVMPSSASKAFQNPFFPEVIRGISSFAHVEGYALYMSTGETEEEIFNGVVKMVQGRQIGGIILLYSRENDRIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGMSDALKLADIVLPKEYILHFDFSRESGQQAVEELMGLQQPPTAIMATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNALLSEIASPPLSTVDVNIYQLGYEAAKALVDKVENAESTAKCIIIPHKLLKRQ 282
               SCOP domains d3k4hb_ B: automated matches                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee...........hhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhh.eeeeee......hhhhhhhhhh...eeee...........eeeehhhhhhhhhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhhhh.......eee...hhhhhhhhhhhhh.......eeee.hhhhhhhhhhhh...........eeeee.............eeee.hhhhhhhhhhhhhhhhhhhh.....eeee..eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k4h B   5 NQTTKTLGLVmPSSASKAFQNPFFPEVIRGISSFAHVEGYALYmSTGETEEEIFNGVVKmVQGRQIGGIILLYSRENDRIIQYLHEQNFPFVLIGKPYDRKDEITYVDNDNYTAAREVAEYLISLGHKQIAFIGGGSDLLVTRDRLAGmSDALKLADIVLPKEYILHFDFSRESGQQAVEELmGLQQPPTAImATDDLIGLGVLSALSKKGFVVPKDVSIVSFNNALLSEIASPPLSTVDVNIYQLGYEAAKALVDKVENAESTAKCIIIPHKLLKRQ 282
                                    14|       24        34        44   |    54        64        74        84        94       104       114       124       134       144       154       164       174       184  |    194  |    204       214       224       234       244       254       264       274        
                                     15-MSE                           48-MSE          64-MSE                                                                                  153-MSE                           187-MSE   197-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3K4H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3K4H)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3K4H)

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