Chain A from PDB Type:PROTEIN Length:137
aligned with TNF13_MOUSE | Q9D777 from UniProtKB/Swiss-Prot Length:241
Alignment length:137
114 124 134 144 154 164 174 184 194 204 214 224 234
TNF13_MOUSE 105 KHSVLHLVPVNITSKADSDVTEVMWQPVLRRGRGLEAQGDIVRVWDTGIYLLYSQVLFHDVTFTMGQVVSREGQGRRETLFRCIRSMPSDPDRAYNSCYSAGVFHLHQGDIITVKIPRANAKLSLSPHGTFLGFVKL 241
SCOP domains d3k48a_ A: automated matches SCOP domains
CATH domains 3k48A00 A:105-241 [code=2.60.120.40, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeeeeeee.......eeeeeeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeee....eeeeeeeeee.........eeeeeeeeeee....eeeeee..............eeeeee. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ---TNF_2 PDB: A:108-241 UniProt: 108-241 PROSITE (1)
PROSITE (2) -----------------------------------------TNF_1 ------------------------------------------------------------------------------- PROSITE (2)
Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
3k48 A 105 KHSVLHLVPVNITSKADSDVTEVMWQPVLRRGRGLEAQGDIVRVWDTGIYLLYSQVLFHDVTFTMGQVVSREGQGRRETLFRCIRSMPSDPDRAYNSCYSAGVFHLHQGDIITVKIPRANAKLSLSPHGTFLGFVKL 241
114 124 134 144 154 164 174 184 194 204 214 224 234
Chain B from PDB Type:PROTEIN Length:137
aligned with TNF13_MOUSE | Q9D777 from UniProtKB/Swiss-Prot Length:241
Alignment length:137
114 124 134 144 154 164 174 184 194 204 214 224 234
TNF13_MOUSE 105 KHSVLHLVPVNITSKADSDVTEVMWQPVLRRGRGLEAQGDIVRVWDTGIYLLYSQVLFHDVTFTMGQVVSREGQGRRETLFRCIRSMPSDPDRAYNSCYSAGVFHLHQGDIITVKIPRANAKLSLSPHGTFLGFVKL 241
SCOP domains d3k48b_ B: automated matches SCOP domains
CATH domains 3k48B00 B:105-241 [code=2.60.120.40, no name defined] CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...eeeeeeeeee.......eeeeeeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee.........eeeeeeeeeee....eeeeee..............eeeeee. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ---TNF_2 PDB: B:108-241 UniProt: 108-241 PROSITE (1)
PROSITE (2) -----------------------------------------TNF_1 ------------------------------------------------------------------------------- PROSITE (2)
Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
3k48 B 105 KHSVLHLVPVNITSKADSDVTEVMWQPVLRRGRGLEAQGDIVRVWDTGIYLLYSQVLFHDVTFTMGQVVSREGQGRRETLFRCIRSMPSDPDRAYNSCYSAGVFHLHQGDIITVKIPRANAKLSLSPHGTFLGFVKL 241
114 124 134 144 154 164 174 184 194 204 214 224 234
Chain D from PDB Type:PROTEIN Length:137
aligned with TNF13_MOUSE | Q9D777 from UniProtKB/Swiss-Prot Length:241
Alignment length:137
114 124 134 144 154 164 174 184 194 204 214 224 234
TNF13_MOUSE 105 KHSVLHLVPVNITSKADSDVTEVMWQPVLRRGRGLEAQGDIVRVWDTGIYLLYSQVLFHDVTFTMGQVVSREGQGRRETLFRCIRSMPSDPDRAYNSCYSAGVFHLHQGDIITVKIPRANAKLSLSPHGTFLGFVKL 241
SCOP domains d3k48d_ D: automated matches SCOP domains
CATH domains 3k48D00 D:105-241 [code=2.60.120.40, no name defined] CATH domains
Pfam domains (1) ------------------------TNF-3k48D01 D:129-241 Pfam domains (1)
Pfam domains (2) ------------------------TNF-3k48D02 D:129-241 Pfam domains (2)
Pfam domains (3) ------------------------TNF-3k48D03 D:129-241 Pfam domains (3)
Sec.struct. author ...eeeeeeeeee........eeeeeeeeee...eeee..eeee...eeeeeeeeeee.....eeeeeeeeee..eeeeeeeeeee.........eeeeeeeeeee....eeeee...............eeeeee. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE (1) ---TNF_2 PDB: D:108-241 UniProt: 108-241 PROSITE (1)
PROSITE (2) -----------------------------------------TNF_1 ------------------------------------------------------------------------------- PROSITE (2)
Transcript ----------------------------------------------------------------------------------------------------------------------------------------- Transcript
3k48 D 105 KHSVLHLVPVNITSKADSDVTEVMWQPVLRRGRGLEAQGDIVRVWDTGIYLLYSQVLFHDVTFTMGQVVSREGQGRRETLFRCIRSMPSDPDRAYNSCYSAGVFHLHQGDIITVKIPRANAKLSLSPHGTFLGFVKL 241
114 124 134 144 154 164 174 184 194 204 214 224 234
Chain R from PDB Type:PROTEIN Length:16
SCOP domains ---------------- SCOP domains
CATH domains ---------------- CATH domains
Pfam domains ---------------- Pfam domains
Sec.struct. author ....hhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ---------------- SAPs(SNPs)
PROSITE ---------------- PROSITE
Transcript ---------------- Transcript
3k48 R 1 SGWCDPRWYDPFMCEH 16
10
Chain S from PDB Type:PROTEIN Length:13
SCOP domains ------------- SCOP domains
CATH domains ------------- CATH domains
Pfam domains ------------- Pfam domains
Sec.struct. author ...hhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------- SAPs(SNPs)
PROSITE ------------- PROSITE
Transcript ------------- Transcript
3k48 S 2 GWCDPRWYDPFMC 14
11
Chain T from PDB Type:PROTEIN Length:13
SCOP domains ------------- SCOP domains
CATH domains ------------- CATH domains
Pfam domains ------------- Pfam domains
Sec.struct. author ........hhhhh Sec.struct. author
SAPs(SNPs) ------------- SAPs(SNPs)
PROSITE ------------- PROSITE
Transcript ------------- Transcript
3k48 T 2 GWCDPRWYDPFMC 14
11
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(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |