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Title :   CRYSTAL STRUCTURE OF PUTATIVE CARBOXYPEPTIDASE (YP_103406.1) FROM BURKHOLDERIA MALLEI ATCC 23344 AT 2.49 A RESOLUTION

Authors :   Joint Center For Structural Genomics (Jcsg)

Date :   30 Sep 09 (Deposition) - 03 Nov 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.49

Chains :   Asym. Unit : A
Biol. Unit 1: A  (4x)

Keywords :   Putative Carboxypeptidase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Carboxypeptidase (Yp_103406. 1 From Burkholderia Mallei Atcc 23344 At 2. 49 A Resolution
To Be Published
PubMed: search

Compounds

Molecule 1 - PUTATIVE CARBOXYPEPTIDASE
	Atcc	:	23344
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	SPEEDET
	Expression System Strain	:	HK100
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BMA1798
	Organism Common	:	PSEUDOMONAS MALLEI
	Organism Scientific	:	BURKHOLDERIA MALLEI ATCC 23344
	Organism Taxid	:	243160

Structural Features

Chains, Units

		1
Asymmetric Unit	:	A
Biological Unit 1 (4x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 16)

Asymmetric Unit (3, 16)

No.	Name	Count	Type	Full Name
1	CL	4	Ligand/Ion	CHLORIDE ION
2	GOL	1	Ligand/Ion	GLYCEROL
3	MSE	11	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 48)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	GOL	4	Ligand/Ion	GLYCEROL
3	MSE	44	Mod. Amino Acid	SELENOMETHIONINE

Sites (5, 5)

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:303 , GLN A:310 , ASP A:311	BINDING SITE FOR RESIDUE CL A 385
2	AC2	SOFTWARE	SER A:7 , ALA A:13 , ILE A:14 , ARG A:30	BINDING SITE FOR RESIDUE CL A 386
3	AC3	SOFTWARE	HIS A:171 , ARG A:226 , ASN A:235 , ARG A:236	BINDING SITE FOR RESIDUE CL A 387
4	AC4	SOFTWARE	ARG A:335 , HOH A:464	BINDING SITE FOR RESIDUE CL A 388
5	AC5	SOFTWARE	ARG A:44 , SER A:105 , HIS A:119 , SER A:120 , SER A:147 , HOH A:473 , HOH A:484	BINDING SITE FOR RESIDUE GOL A 389

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:387
 aligned with A0A0H2WJQ2_B | A0A0H2WJQ2 from UniProtKB/TrEMBL  Length:384

    Alignment length:391
                                    1                                                                                                                                                                                                                                                                                                                                                                                              
                                    |2        12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382 
         A0A0H2WJQ2_B     - --------MTLSITSNFDAGAIDVVSCERADAIRLRVRGDNRSEFAQWFYFRLTGARGERCVMTFENANDCAYPAGWRDYRAVASYDRVNWFRVPTSYDGQMLTIDHTPEFDSIHYAYFEPYSEERHSEFLGAVQQMPQASVVELGRTVEGRPMSLVVLGTPDEAGAAKKKVWIIARQHPGESMAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNMNPDGSVHGNLRTNAAGANLNREWMEPDAERSPEVLVVRDAIHAIGCDLFFDIHGDEDLPYVFAAGSEMLPGFTEQQRVEQSAFIDSFKRASPDFQDEHGYPPGKYREDAFKLASKYIGHRFGCLSLTLEMPFKDNANLPDEHIGWNGARSASLGAAMLGAILEHVRAF 383
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........eee........eeee..hhhheeee.............eeeee......eeeee.hhhhh.hhhhhh....eee......ee..eee....eeeee.....eeeee.....hhhhhhhhhhhhh....eeeeeeee.....eeeeeee....----..eeeeeee......hhhhhhhhhhhhhhh.hhhhh..hhhhhhhhheeeeee...hhhhhhh..........hhhhh........hhhhhhhhhhhhhhh..eeeeeeee......eee........hhhhhhhhhhhhhhhhhhh.........hhhhh..hhhhhhhhhhhhhhh.eeeeeeee..............hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k2k A  -7 HENLYFQGmTLSITSNFDAGAIDVVSCERADAIRLRVRGDNRSEFAQWFYFRLTGARGERCVmTFENANDCAYPAGWRDYRAVASYDRVNWFRVPTSYDGQmLTIDHTPEFDSIHYAYFEPYSEERHSEFLGAVQQmPQASVVELGRTVEGRPmSLVVLGTPD----AKKKVWIIARQHPGESmAEWFIEGLVKRLVGWGDWSGDPVARKLYDHATFYIVPNmNPDGSVHGNLRTNAAGANLNREWmEPDAERSPEVLVVRDAIHAIGCDLFFDIHGDEDLPYVFAAGSEmLPGFTEQQRVEQSAFIDSFKRASPDFQDEHGYPPGKYREDAFKLASKYIGHRFGCLSLTLEmPFKDNANLPDEHIGWNGARSASLGAAmLGAILEHVRAF 383
                                    |2        12        22        32        42        52  |     62        72        82        92 |     102       112       122      |132       142   |   152  |    162       172   |   182       192       202       212  |    222       232      |242       252       262       272       282|      292       302       312       322       332       342  |    352       362       372       382 
                                    1-MSE                                                55-MSE                                 94-MSE                            129-MSE          146-MSE  155  160             176-MSE                                215-MSE                 239-MSE                                     283-MSE                                                       345-MSE                    372-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Description