3K1E - JenaLib

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Title :   CRYSTAL STRUCTURE OF ODORANT BINDING PROTEIN 1 (AAEGOBP1) FROM AEDES AEGYPTI

Authors :   N. R. Leite, R. Krogh, W. S. Leal, J. Iulek, G. Oliva

Date :   27 Sep 09 (Deposition) - 08 Dec 09 (Release) - 21 Mar 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: A,B  (1x)

Keywords :   Insect Odorant Binding Protein Fold, Odorant Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. R. Leite, R. Krogh, W. Xu, Y. Ishida, J. Iulek, W. S. Leal, G. Oliva
Structure Of An Odorant-Binding Protein From The Mosquito Aedes Aegypti Suggests A Binding Pocket Covered By A Ph-Sensitive "Lid".
Plos One V. 4 E8006 2009
PubMed-ID: 19956631 | Reference-DOI: 10.1371/JOURNAL.PONE.0008006

Molecule 1 - ODORANT BINDING PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22B(+)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 19-143
	Gene	:	AAEL009449
	Organism Common	:	YELLOWFEVER MOSQUITO
	Organism Scientific	:	AEDES AEGYPTI
	Organism Taxid	:	7159
	Synonym	:	ODORANT-BINDING PROTEIN 1

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 5)

No.	Name	Count	Type	Full Name
1	CL	1	Ligand/Ion	CHLORIDE ION
2	MG	3	Ligand/Ion	MAGNESIUM ION
3	PEU	1	Ligand/Ion	2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	PEU	1	Ligand/Ion	2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	PEU	1	Ligand/Ion	2,5,8,11,14,17,20,23,26,29,32,35,38,41,44,47,50,53,56,59,62,65,68,71,74,77,80-HEPTACOSAOXADOOCTACONTAN-82-OL

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:85 , HOH A:203 , HOH A:204 , HOH A:205 , HOH A:206 , HOH A:207	BINDING SITE FOR RESIDUE MG A 201
2	AC2	SOFTWARE	GLU A:47 , HOH B:208 , HOH B:209 , HOH B:210 , HOH B:211 , HOH B:212	BINDING SITE FOR RESIDUE MG B 202
3	AC3	SOFTWARE	GLU A:47 , LYS B:93	BINDING SITE FOR RESIDUE CL B 201
4	AC4	SOFTWARE	HIS B:77 , LEU B:80 , ASP B:82 , HIS B:85 , HOH B:203 , HOH B:204	BINDING SITE FOR RESIDUE MG B 126
5	AC5	SOFTWARE	PHE A:15 , MET A:19 , ALA A:62 , MET A:84 , ALA A:88 , LEU A:89 , MET A:91 , TRP A:114 , PHE A:123 , HOH A:209 , HOH A:426 , HOH A:481 , MET B:19 , ALA B:62 , LEU B:76 , MET B:84 , ALA B:88 , LEU B:89 , GLY B:92 , LYS B:93 , PHE B:123 , HOH B:495	BINDING SITE FOR RESIDUE PEU A 126

Asymmetric Unit

No.	Residues
1	A:26	-	A:57
2	A:53	-	A:104
3	A:95	-	A:113
4	B:26	-	B:57
5	B:53	-	B:104
6	B:95	-	B:113

Asymmetric Unit

No.	Residues
1	Tyr A:10	-	Pro A:11
2	Tyr B:10	-	Pro B:11

(no "SAP(SNP)/Variant" information available for 3K1E)

(no "PROSITE Motif" information available for 3K1E)

(no "Exon" information available for 3K1E)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:124
 aligned with Q6Y2R8_AEDAE | Q6Y2R8 from UniProtKB/TrEMBL  Length:143

    Alignment length:124
                                    29        39        49        59        69        79        89        99       109       119       129       139    
         Q6Y2R8_AEDAE    20 VTPRRDAEYPPPEFLEAMKPLREICIKKTGVTEEAIIEFSDGKVHEDENLKCYMNCLFHEAKVVDDTGHVHLEKLHDALPDSMHDIALHMGKRCLYPEGENLCEKAFWLHKCWKESDPKHYFLI 143
               SCOP domains d3k1ea_ A: automated matches                                                                                                 SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k1e A   2 VTPRRDAEYPPPEFLEAMKPLREICIKKTGVTEEAIIEFSDGKVHEDENLKCYMNCLFHEAKVVDDTGHVHLEKLHDALPDSMHDIALHMGKRCLYPEGENLCEKAFWLHKCWKESDPKHYFLI 125
                                    11        21        31        41        51        61        71        81        91       101       111       121

Chain B from PDB  Type:PROTEIN  Length:116
 aligned with Q6Y2R8_AEDAE | Q6Y2R8 from UniProtKB/TrEMBL  Length:143

    Alignment length:116
                                    37        47        57        67        77        87        97       107       117       127       137      
         Q6Y2R8_AEDAE    28 YPPPEFLEAMKPLREICIKKTGVTEEAIIEFSDGKVHEDENLKCYMNCLFHEAKVVDDTGHVHLEKLHDALPDSMHDIALHMGKRCLYPEGENLCEKAFWLHKCWKESDPKHYFLI 143
               SCOP domains d3k1eb_ B: automated matches                                                                                         SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) PBP_GOBP-3k1eB01 B:10-119                                                                                     ------ Pfam domains (1)
           Pfam domains (2) PBP_GOBP-3k1eB02 B:10-119                                                                                     ------ Pfam domains (2)
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------- Transcript
                 3k1e B  10 YPPPEFLEAMKPLREICIKKTGVTEEAIIEFSDGKVHEDENLKCYMNCLFHEAKVVDDTGHVHLEKLHDALPDSMHDIALHMGKRCLYPEGENLCEKAFWLHKCWKESDPKHYFLI 125
                                    19        29        39        49        59        69        79        89        99       109       119

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: EF Hand-like (739)

Superfamily: Insect pheromone/odorant-binding proteins (68)

Family: automated matches (18)

Protein domain: automated matches (18)

Yellow fever mosquito (Aedes aegypti) [TaxId: 7159] (1)

1a	d3k1ea_	A:
1b	d3k1eb_	B:

(no "CATH Domain" information available for 3K1E)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: PBP_GOBP] (36)

Family: PBP_GOBP (36)

Aedes aegypti (Yellowfever mosquito) (Culex aegypti) (1)

1a	PBP_GOBP-3k1eB01	B:10-119
1b	PBP_GOBP-3k1eB02	B:10-119

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q6Y2R8_AEDAE | Q6Y2R8)

molecular function
	GO:0046872		metal ion binding		Interacting selectively and non-covalently with any metal ion.
	GO:0005549		odorant binding		Interacting selectively and non-covalently with an odorant, any substance capable of stimulating the sense of smell.

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	Cis Peptide Bonds
		Tyr A:10 - Pro A:11	[ RasMol ]
		Tyr B:10 - Pro B:11	[ RasMol ]

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