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(-) Description

Title :  CRYSTAL STRUCTURE OF AN UNCHARACTERIZED PROTEIN A6V7T0 FROM PSEUDOMONAS AERUGINOSA
 
Authors :  M. Ho, U. A. Ramagopal, R. Toro, S. K. Burley, S. C. Almo, New York Sgx R Center For Structural Genomics (Nysgxrc)
Date :  25 Sep 09  (Deposition) - 27 Oct 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.49
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,C,D  (1x)
Biol. Unit 2:  B,E,F  (1x)
Keywords :  Structural Genomics, Unknown Function, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Ho. M. , U. A. Ramagopal, R. Toro, S. K. Burley, S. C. Almo
Crystal Structure Of An Uncharacterized Protein A6V7T0 From Pseudomonas Aeruginosa
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN A6V7T0
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PLASMID
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: PA1568, PSPA7_3761
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Other Details: BC-PSGX4(BC)

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A CD  
Biological Unit 2 (1x):  B  EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 14)

Asymmetric Unit (2, 14)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
2MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 7)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR C:76 , ARG C:95 , ALA C:96 , CYS C:97 , ARG D:14 , GLU D:110BINDING SITE FOR RESIDUE GOL C 1
2AC2SOFTWAREILE B:103 , TRP B:107 , GLU B:110 , TYR E:76 , ARG E:95 , ALA E:96 , CYS E:97 , HOH E:178BINDING SITE FOR RESIDUE GOL E 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3K12)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3K12)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3K12)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3K12)

(-) Exons   (0, 0)

(no "Exon" information available for 3K12)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:115
 aligned with Q9I3E9_PSEAE | Q9I3E9 from UniProtKB/TrEMBL  Length:117

    Alignment length:115
                                    11        21        31        41        51        61        71        81        91       101       111     
         Q9I3E9_PSEAE     2 HIERFEVVKRRAEMALHGNTVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEMIVVAARP 116
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee..eeeeeee.......hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhh.........eeeeee.........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 3k12 A   4 HIERFEVVKRRAEmALHGNTVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEmIVVAARE 118
                                    13   |    23        33        43        53        63        73        83        93       103       113     
                                        17-MSE                                                                                       111-MSE   


Chain B from PDB  Type:PROTEIN  Length:114
 aligned with Q9I3E9_PSEAE | Q9I3E9 from UniProtKB/TrEMBL  Length:117

    Alignment length:114
                                    11        21        31        41        51        61        71        81        91       101       111    
         Q9I3E9_PSEAE     2 HIERFEVVKRRAEMALHGNTVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEMIVVAAR 115
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeeeeeeeeeee..eeee..........hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhh.........eeeeee.........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 3k12 B   4 HIERFEVVKRRAEmALHGNTVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEmIVVAAR 117
                                    13   |    23        33        43        53        63        73        83        93       103       113    
                                        17-MSE                                                                                       111-MSE  


Chain C from PDB  Type:PROTEIN  Length:115
 aligned with Q9I3E9_PSEAE | Q9I3E9 from UniProtKB/TrEMBL  Length:117

    Alignment length:115
                                    11        21        31        41        51        61        71        81        91       101       111     
         Q9I3E9_PSEAE     2 HIERFEVVKRRAEMALHGNTVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEMIVVAARP 116
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eeeeee..eeeeeee.......hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhh.........eeeeee.........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 3k12 C   4 HIERFEVVKRRAEmALHGNTVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEmIVVAARE 118
                                    13   |    23        33        43        53        63        73        83        93       103       113     
                                        17-MSE                                                                                       111-MSE   


Chain D from PDB  Type:PROTEIN  Length:120
 aligned with Q9I3E9_PSEAE | Q9I3E9 from UniProtKB/TrEMBL  Length:117

    Alignment length:120
                                                                                                                                             117    
                                    11        21        31        41        51        61        71        81        91       101       111     |   -
         Q9I3E9_PSEAE     2 HIERFEVVKRRAEMALHGNTVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEMIVVAARPQ----   -
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee....eeeeee..eeeeeee.......hhhhhhhhhhhhhhhhhhhh......eeeeeeee.hhhhhhhhhhhhhhhh......eeeeee.........eeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 3k12 D   4 HIERFEVVKRRAEmALHGNTVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEmIVVAAREGHHHH 123
                                    13   |    23        33        43        53        63        73        83        93       103       113       123
                                        17-MSE                                                                                       111-MSE        


Chain E from PDB  Type:PROTEIN  Length:115
 aligned with Q9I3E9_PSEAE | Q9I3E9 from UniProtKB/TrEMBL  Length:117

    Alignment length:115
                                    11        21        31        41        51        61        71        81        91       101       111     
         Q9I3E9_PSEAE     2 HIERFEVVKRRAEMALHGNTVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEMIVVAARP 116
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....eeeeee..eeeeeee.......hhhhhhhhhhhhhhhhhhhh......eeeeeeee.hhhhhhhhhhhhhhhh......eeeeee.........eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 3k12 E   4 HIERFEVVKRRAEmALHGNTVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEmIVVAARE 118
                                    13   |    23        33        43        53        63        73        83        93       103       113     
                                        17-MSE                                                                                       111-MSE   


Chain F from PDB  Type:PROTEIN  Length:114
 aligned with Q9I3E9_PSEAE | Q9I3E9 from UniProtKB/TrEMBL  Length:117

    Alignment length:114
                                    11        21        31        41        51        61        71        81        91       101       111    
         Q9I3E9_PSEAE     2 HIERFEVVKRRAEMALHGNTVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEMIVVAAR 115
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) --Ribonuc_L-PSP-3k12F01 F:6-117                                                                                    Pfam domains (1)
           Pfam domains (2) --Ribonuc_L-PSP-3k12F02 F:6-117                                                                                    Pfam domains (2)
           Pfam domains (3) --Ribonuc_L-PSP-3k12F03 F:6-117                                                                                    Pfam domains (3)
           Pfam domains (4) --Ribonuc_L-PSP-3k12F04 F:6-117                                                                                    Pfam domains (4)
           Pfam domains (5) --Ribonuc_L-PSP-3k12F05 F:6-117                                                                                    Pfam domains (5)
           Pfam domains (6) --Ribonuc_L-PSP-3k12F06 F:6-117                                                                                    Pfam domains (6)
         Sec.struct. author ..eeeee....eeeeee..eeeeeee.......hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeee.hhhhhhhhhhhhh.........eeeeee.........eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 3k12 F   4 HIERFEVVKRRAEmALHGNTVYIGGQVADDPSGDIQDQTRQILENIDRLLQSVGSDRGQVLSVRILLAHREDYAGLNQVWDQWFPEGRAPTRACSLAELIDPRWRVEmIVVAAR 117
                                    13   |    23        33        43        53        63        73        83        93       103       113    
                                        17-MSE                                                                                       111-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3K12)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3K12)

(-) Pfam Domains  (1, 6)

Asymmetric Unit
(-)
Clan: no clan defined [family: Ribonuc_L-PSP] (16)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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