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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE TOXIN RELATED PROTEIN (YP_001303978.1) FROM PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.16 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  25 Sep 09  (Deposition) - 06 Oct 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.16
Chains :  Asym./Biol. Unit :  A
Keywords :  Putative Toxin Related Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function, Toxin (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Toxin Related Protein (Yp_001303978. 1) From Parabacteroides Distasonis Atcc 8503 At 2. 16 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE TOXIN RELATED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BDI_2637
    Organism Scientific: PARABACTEROIDES DISTASONIS ATCC 8503
    Organism Taxid: 435591
    Strain: ATCC 8503 / DSM 20701 / NCTC 11152

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
12PE2Ligand/IonNONAETHYLENE GLYCOL
2MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:135 , TRP A:138BINDING SITE FOR RESIDUE 2PE A 500
2AC2SOFTWAREASN A:136 , TRP A:138 , TYR A:147 , ARG A:192BINDING SITE FOR RESIDUE 2PE A 501

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3K0Y)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3K0Y)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 3K0Y)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:198
 aligned with A6LF92_PARD8 | A6LF92 from UniProtKB/TrEMBL  Length:253

    Alignment length:220
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253
         A6LF92_PARD8    34 DIWIAVATVVPEGNNVYYLRLDDGDKLWPAATNYPNYQPKPNQRALVNFTILADSTQSNLGGFSHYIKVNAIHNILTKSIAKNEGAANDSIYGTDPVSIYNNNMWIGDGYLNIYFETLWGGKTAHFINLIQPDAENDPYTLEFRHNAYDDPQYTIGAGRVAFNLSSLPDTKGETVDLVVNYWTSEGKQAYKLKYNSDKTKMEDTSQGYTNDSISNITDMK 253
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -----NigD-3k0yA01 A:39-224                                                                                                                                                                     ----------             ------ Pfam domains
         Sec.struct. author .eeeeeeeeeeee..eeeeee....eeeeeee..........eeeeeeeeeee.---------.eeeeeeeeeeeeeee....hhhhhhhhhh..........eeee..eeeeeeeeee......eeeee.........eeeeeee.......eeeeeeeeee...........eeeeeeeee..eeeeeeeee.......-------------...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3k0y A  34 DIWIAVATVVPEGNNVYYLRLDDGDKLWPAATNYPNYQPKPNQRALVNFTILAD---------SHYIKVNAIHNILTKSIAKNEGAANDSIYGTDPVSIYNNNmWIGDGYLNIYFETLWGGKTAHFINLIQPDAENDPYTLEFRHNAYDDPQYTIGAGRVAFNLSSLPDTKGETVDLVVNYWTSEGKQAYKLKYNSDKTKm-------------NITDmK 253
                                    43        53        63        73        83   |     -   |   103       113       123       133   |   143       153       163       173       183       193       203       213       223       233|        -    |  253
                                                                                87        97                                     137-MSE                                                                                          234-MSE       248   | 
                                                                                                                                                                                                                                                    252-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3K0Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3K0Y)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: NigD] (4)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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