3JZT - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Biological Unit 8 (Jmol Viewer)

Title :   STRUCTURE OF A CUBIC CRYSTAL FORM OF X (ADRP) DOMAIN FROM FCOV WITH ADP-RIBOSE

Authors :   J. A. Wojdyla, I. Manolaridis, P. A. Tucker

Date :   24 Sep 09 (Deposition) - 12 Jan 10 (Release) - 12 Jan 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.91

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)

Keywords :   Adrp Domain, X Domain, Macro Domain, Adp-Ribose, Coronavirus, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. A. Wojdyla, I. Manolaridis, E. J. Snijder, A. E. Gorbalenya, B. Coutard, Y. Piotrowski, R. Hilgenfeld, P. A. Tucker
Structure Of The X (Adrp) Domain Of Nsp3 From Feline Coronavirus
Acta Crystallogr. , Sect. D V. 65 1292 2009
PubMed-ID: 19966415 | Reference-DOI: 10.1107/S0907444909040074
(for further references see the PDB file header)

Molecule 1 - MACRO DOMAIN OF NON-STRUCTURAL PROTEIN 3
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PETM11
	Expression System Strain	:	BL21(DE3)RIL
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	REP, 1A-1B
	Organism Common	:	FCOV
	Organism Scientific	:	FELINE CORONAVIRUS
	Organism Taxid	:	33734
	Strain	:	FIPV WSU-79/1146
	Synonym	:	ADRP (X) DOMAIN

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 6)

No.	Name	Count	Type	Full Name
1	APR	3	Ligand/Ion	ADENOSINE-5-DIPHOSPHORIBOSE
2	CL	2	Ligand/Ion	CHLORIDE ION
3	NA	1	Ligand/Ion	SODIUM ION

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	APR	-1	Ligand/Ion	ADENOSINE-5-DIPHOSPHORIBOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	APR	1	Ligand/Ion	ADENOSINE-5-DIPHOSPHORIBOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	APR	1	Ligand/Ion	ADENOSINE-5-DIPHOSPHORIBOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	APR	1	Ligand/Ion	ADENOSINE-5-DIPHOSPHORIBOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 5 (0, 0)

No.	Name	Count	Type	Full Name
1	APR	-1	Ligand/Ion	ADENOSINE-5-DIPHOSPHORIBOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 6 (0, 0)

No.	Name	Count	Type	Full Name
1	APR	-1	Ligand/Ion	ADENOSINE-5-DIPHOSPHORIBOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 7 (0, 0)

No.	Name	Count	Type	Full Name
1	APR	-1	Ligand/Ion	ADENOSINE-5-DIPHOSPHORIBOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 8 (0, 0)

No.	Name	Count	Type	Full Name
1	APR	-1	Ligand/Ion	ADENOSINE-5-DIPHOSPHORIBOSE
2	CL	-1	Ligand/Ion	CHLORIDE ION
3	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA B:67 , ALA B:68 , ASN B:69 , ARG B:73 , VAL B:75 , GLY B:76 , GLY B:77 , VAL B:78 , SER B:158 , VAL B:159 , GLY B:160 , ILE B:161 , PHE B:162 , TYR B:187 , GLU B:191	BINDING SITE FOR RESIDUE APR B 477
2	AC2	SOFTWARE	GLY C:50 , LEU C:52 , ALA C:67 , ASN C:69 , ARG C:73 , VAL C:75 , GLY C:76 , GLY C:77 , VAL C:78 , SER C:158 , VAL C:159 , GLY C:160 , ILE C:161 , PHE C:162 , TYR C:187 , GLU C:191	BINDING SITE FOR RESIDUE APR C 477
3	AC3	SOFTWARE	LEU D:52 , ALA D:67 , ASN D:69 , ARG D:73 , VAL D:75 , GLY D:76 , GLY D:77 , VAL D:78 , ALA D:79 , SER D:158 , VAL D:159 , GLY D:160 , ILE D:161 , PHE D:162 , TYR D:187 , GLU D:191	BINDING SITE FOR RESIDUE APR D 477
4	AC4	SOFTWARE	ASN A:108	BINDING SITE FOR RESIDUE CL A 1
5	AC5	SOFTWARE	VAL G:186 , GLU G:191	BINDING SITE FOR RESIDUE CL G 2
6	AC6	SOFTWARE	LYS B:92 , ARG B:93	BINDING SITE FOR RESIDUE NA B 3

Asymmetric Unit

No.	Residues
1	A:139	-	A:172
2	B:139	-	B:172
3	C:139	-	C:172
4	D:139	-	D:172
5	E:139	-	E:172
6	F:139	-	F:172
7	G:139	-	G:172
8	H:139	-	H:172

(no "Cis Peptide Bond" information available for 3JZT)

(no "SAP(SNP)/Variant" information available for 3JZT)

(no "PROSITE Motif" information available for 3JZT)

(no "Exon" information available for 3JZT)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:168
 aligned with R1AB_FIPV | Q98VG9 from UniProtKB/Swiss-Prot  Length:6709

    Alignment length:168
                                  1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490        
           R1AB_FIPV   1331 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG 1498
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee..eeeee.hhhhhhhhhh..eeeee.......hhhhhhhhhhhh.hhhhhhhhhhhh.........eeeeeeee..eeeeee........hhhhhhhhhhhhhhh....eee....hhhhh.hhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3jzt A   34 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG  201
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain B from PDB  Type:PROTEIN  Length:168
 aligned with R1AB_FIPV | Q98VG9 from UniProtKB/Swiss-Prot  Length:6709

    Alignment length:168
                                  1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490        
           R1AB_FIPV   1331 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG 1498
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee..eeeee.hhhhhhhhhh..eeeeee.......hhhhhhhhhhh.hhhhhhhhhhhhhh.......eeeeeeee..eeeeeee.......hhhhhhhhhhhhhhh....eeee.........hhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3jzt B   34 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG  201
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain C from PDB  Type:PROTEIN  Length:168
 aligned with R1AB_FIPV | Q98VG9 from UniProtKB/Swiss-Prot  Length:6709

    Alignment length:168
                                  1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490        
           R1AB_FIPV   1331 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG 1498
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee..eeeee.hhhhhhhhhh..eeeeee.......hhhhhhhhhhh.hhhhhhhhhhhhhh.......eeeeeeee..eeeeeee.......hhhhhhhhhhhhhhh....eeee.........hhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3jzt C   34 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG  201
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain D from PDB  Type:PROTEIN  Length:168
 aligned with R1AB_FIPV | Q98VG9 from UniProtKB/Swiss-Prot  Length:6709

    Alignment length:168
                                  1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490        
           R1AB_FIPV   1331 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG 1498
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee..eeeee.hhhhhhhhhh..eeeeee.......hhhhhhhhhhh.hhhhhhhhhhhhhh.......eeeeeeee..eeeeeee.......hhhhhhhhhhhhhhh....eeee.........hhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3jzt D   34 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG  201
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain E from PDB  Type:PROTEIN  Length:168
 aligned with R1AB_FIPV | Q98VG9 from UniProtKB/Swiss-Prot  Length:6709

    Alignment length:168
                                  1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490        
           R1AB_FIPV   1331 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG 1498
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee..eeeee.hhhhhhhhhh..eeeee.......hhhhhhhhhhhh.hhhhhhhhhhhh.........eeeeeeee..eeeeee........hhhhhhhhhhhhhhh....eee....hhhhh.hhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3jzt E   34 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG  201
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain F from PDB  Type:PROTEIN  Length:168
 aligned with R1AB_FIPV | Q98VG9 from UniProtKB/Swiss-Prot  Length:6709

    Alignment length:168
                                  1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490        
           R1AB_FIPV   1331 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG 1498
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee..eeeee.hhhhhhhhhh..eeeee..........hhhhhhhhh.hhhhhhhhhhhhhh.......eeeeeeee..eeeeee........hhhhhhhhhhhhhhhh...eee....hhhhh.hhhhhhhhhhhhh.....eeee.hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3jzt F   34 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG  201
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain G from PDB  Type:PROTEIN  Length:168
 aligned with R1AB_FIPV | Q98VG9 from UniProtKB/Swiss-Prot  Length:6709

    Alignment length:168
                                  1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490        
           R1AB_FIPV   1331 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG 1498
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ......eee..eeeee.hhhhhhhhhh..eeeee.......hhhhhhhhhhhh.hhhhhhhhhhhh.........eeeeeeee..eeeeee........hhhhhhhhhhhhhhh....eee....hhhhh.hhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3jzt G   34 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG  201
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Chain H from PDB  Type:PROTEIN  Length:168
 aligned with R1AB_FIPV | Q98VG9 from UniProtKB/Swiss-Prot  Length:6709

    Alignment length:168
                                  1340      1350      1360      1370      1380      1390      1400      1410      1420      1430      1440      1450      1460      1470      1480      1490        
           R1AB_FIPV   1331 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG 1498
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
           Pfam domains (1) -------------------------------Macro-3jztH01 H:65-173                                                                                       ---------------------------- Pfam domains (1)
           Pfam domains (2) -------------------------------Macro-3jztH02 H:65-173                                                                                       ---------------------------- Pfam domains (2)
           Pfam domains (3) -------------------------------Macro-3jztH03 H:65-173                                                                                       ---------------------------- Pfam domains (3)
           Pfam domains (4) -------------------------------Macro-3jztH04 H:65-173                                                                                       ---------------------------- Pfam domains (4)
           Pfam domains (5) -------------------------------Macro-3jztH05 H:65-173                                                                                       ---------------------------- Pfam domains (5)
           Pfam domains (6) -------------------------------Macro-3jztH06 H:65-173                                                                                       ---------------------------- Pfam domains (6)
           Pfam domains (7) -------------------------------Macro-3jztH07 H:65-173                                                                                       ---------------------------- Pfam domains (7)
           Pfam domains (8) -------------------------------Macro-3jztH08 H:65-173                                                                                       ---------------------------- Pfam domains (8)
         Sec.struct. author ......eee..eeeee.hhhhhhhhhh..eeeee.......hhhhhhhhhhhh.hhhhhhhhhhhh.........eeeeeeee..eeeeee........hhhhhhhhhhhhhhh....eeee...hhhhh.hhhhhhhhhhhhh....eeeee.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                3jzt H   34 DLILPFYKAGKVSFYQGDLDVLINFLEPDVLVNAANGDLRHVGGVARAIDVFTGGKLTKRSKEYLKSSKAIAPGNAVLFENVLEHLSVLNAVGPRNGDSRVEGKLCNVYKAIAKCDGKILTPLISVGIFKVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFNG  201
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3JZT)

(no "CATH Domain" information available for 3JZT)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: MACRO (14)

Family: Macro (9)

Feline coronavirus (strain FIPV WSU-79/1146) (FCoV) (1)

1a	Macro-3jztH01	H:65-173
1b	Macro-3jztH02	H:65-173
1c	Macro-3jztH03	H:65-173
1d	Macro-3jztH04	H:65-173
1e	Macro-3jztH05	H:65-173
1f	Macro-3jztH06	H:65-173
1g	Macro-3jztH07	H:65-173
1h	Macro-3jztH08	H:65-173

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (R1AB_FIPV | Q98VG9)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003968	RNA-directed 5'-3' RNA polymerase activity	Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
	GO:0004197	cysteine-type endopeptidase activity	Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
	GO:0008234	cysteine-type peptidase activity	Catalysis of the hydrolysis of peptide bonds in a polypeptide chain by a mechanism in which the sulfhydryl group of a cysteine residue at the active center acts as a nucleophile.
	GO:0004519	endonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by creating internal breaks.
	GO:0004527	exonuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	Catalysis of the hydrolysis of ester linkages within ribonucleic acids by removing nucleotide residues from the 3' or 5' end to yield 5' phosphomonoesters.
	GO:0004386	helicase activity	Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008168	methyltransferase activity	Catalysis of the transfer of a methyl group to an acceptor molecule.
	GO:0004518	nuclease activity	Catalysis of the hydrolysis of ester linkages within nucleic acids.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016779	nucleotidyltransferase activity	Catalysis of the transfer of a nucleotidyl group to a reactant.
	GO:0008242	omega peptidase activity	Catalysis of the removal of terminal peptide residues that are substituted, cyclized or linked by isopeptide bonds (peptide linkages other than those of alpha-carboxyl to alpha-amino groups).
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	Catalysis of the thiol-dependent hydrolysis of an ester, thioester, amide, peptide or isopeptide bond formed by the C-terminal glycine of ubiquitin.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	The chemical reactions and pathways involving the hydrolysis of terminal 3',5'-phosphodiester bonds in one or two strands of ribonucleotides.
	GO:0030683	evasion or tolerance by virus of host immune response	Any process, either active or passive, by which a virus avoids the effects of the host organism's immune response. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0039520	induction by virus of host autophagy	Any process in which a virus activates or increases the frequency, rate or extent of autophagy in the host.
	GO:0032259	methylation	The process in which a methyl group is covalently attached to a molecule.
	GO:0039648	modulation by virus of host protein ubiquitination	Any process in which a virus modulates the frequency, rate or extent of protein ubiquitination in the host organism. Ubiquitination is the process in which one or more ubiquitin groups are added to a protein.
	GO:0090305	nucleic acid phosphodiester bond hydrolysis	The nucleic acid metabolic process in which the phosphodiester bonds between nucleotides are cleaved by hydrolysis.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
	GO:0039548	suppression by virus of host IRF3 activity	Any process in which a virus stops, prevents, or reduces the activity of host IRF3 (interferon regulatory factor-3), a transcription factor in the RIG-I/MDA-5 signaling pathway. Viral infection triggers phosphorylation of cytoplasmic IRF3, which allows IRF3 to form a homodimer, migrate to the nucleus, and activate transcription of IFN-alpha and IFN-beta genes.
	GO:0039503	suppression by virus of host innate immune response	Any process in which a virus stops, prevents, or reduces the frequency, rate or extent of the innate immune response of the host organism, the host's first line of defense.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
	GO:0001172	transcription, RNA-templated	The cellular synthesis of RNA on a template of RNA.
	GO:0019079	viral genome replication	Any process involved directly in viral genome replication, including viral nucleotide metabolism.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019082	viral protein processing	Any protein maturation process achieved by the cleavage of a peptide bond or bonds within a viral protein.
cellular component
	GO:0030430	host cell cytoplasm	The cytoplasm of a host cell.
	GO:0044172	host cell endoplasmic reticulum-Golgi intermediate compartment	A complex system of membrane-bounded compartments located between host cell endoplasmic reticulum (ER) and the host Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi transport.
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0044220	host cell perinuclear region of cytoplasm	The host cell cytoplasm situated near, or occurring around, the host nucleus.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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	3jzt
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	R1AB_FIPV \| Q98VG9
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	R1AB_FIPV \| Q98VG9
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	R1AB_FIPV \| Q98VG9	:	3eti 3ew5 3gzf 3ub0 4zro 5eu8

Description

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Ligands, Modified Residues, Ions (3, 6)

Sites (6, 6)

SS Bonds (8, 8)

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