3JZE - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   1.8 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF DIHYDROOROTASE (PYRC) FROM SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. LT2

Authors :   G. Minasov, A. Halavaty, L. Shuvalova, I. Dubrovska, J. Winsor, L. Papa W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)

Date :   23 Sep 09 (Deposition) - 29 Sep 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: A,B,C,D  (1x)

Keywords :   Dihydroorotase, Pyrc, Idp00873, Hydrolase, Metal-Binding, Pyrimidine Biosynthesis, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Minasov, A. Halavaty, L. Shuvalova, I. Dubrovska, J. Winsor, L. Papazisi, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 8 Angstrom Resolution Crystal Structure Of Dihydroorotase (Pyrc) From Salmonella Enterica Subsp. Enterica Serovar Typhimurium Str. Lt2.
To Be Published
PubMed: search

Molecule 1 - DIHYDROOROTASE
	Atcc	:	700720
	Chains	:	A, B, C, D
	EC Number	:	3.5.2.3
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	DL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PYRC, STM1163
	Organism Scientific	:	SALMONELLA ENTERICA SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. LT2
	Organism Taxid	:	99287
	Strain	:	SUBSP. ENTERICA SEROVAR TYPHIMURIUM STR. LT2
	Synonym	:	DHOASE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (7, 32)

No.	Name	Count	Type	Full Name
1	ACY	6	Ligand/Ion	ACETIC ACID
2	BME	8	Ligand/Ion	BETA-MERCAPTOETHANOL
3	CL	2	Ligand/Ion	CHLORIDE ION
4	KCX	4	Mod. Amino Acid	LYSINE NZ-CARBOXYLIC ACID
5	PG4	2	Ligand/Ion	TETRAETHYLENE GLYCOL
6	PGE	2	Ligand/Ion	TRIETHYLENE GLYCOL
7	ZN	8	Ligand/Ion	ZINC ION

Biological Unit 1 (5, 22)

No.	Name	Count	Type	Full Name
1	ACY	6	Ligand/Ion	ACETIC ACID
2	BME	8	Ligand/Ion	BETA-MERCAPTOETHANOL
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	KCX	4	Mod. Amino Acid	LYSINE NZ-CARBOXYLIC ACID
5	PG4	2	Ligand/Ion	TETRAETHYLENE GLYCOL
6	PGE	2	Ligand/Ion	TRIETHYLENE GLYCOL
7	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (5, 22)

No.	Name	Count	Type	Full Name
1	ACY	6	Ligand/Ion	ACETIC ACID
2	BME	8	Ligand/Ion	BETA-MERCAPTOETHANOL
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	KCX	4	Mod. Amino Acid	LYSINE NZ-CARBOXYLIC ACID
5	PG4	2	Ligand/Ion	TETRAETHYLENE GLYCOL
6	PGE	2	Ligand/Ion	TRIETHYLENE GLYCOL
7	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (27, 27)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	HIS A:17 , HIS A:19 , KCX A:103 , ASP A:251 , ZN A:402 , HOH A:419	BINDING SITE FOR RESIDUE ZN A 401
02	AC2	SOFTWARE	KCX A:103 , HIS A:140 , HIS A:178 , ZN A:401 , HOH A:419	BINDING SITE FOR RESIDUE ZN A 402
03	AC3	SOFTWARE	CYS A:264 , GLY A:265 , BME A:415 , GLY B:214 , GLY B:215	BINDING SITE FOR RESIDUE BME A 411
04	AC4	SOFTWARE	HIS A:255 , CYS A:266 , BME A:411 , HOH A:570 , HOH A:915	BINDING SITE FOR RESIDUE BME A 415
05	AC5	SOFTWARE	LYS A:173 , ASP A:193 , TYR A:194 , GLN A:302 , PHE A:303 , GLY A:305 , HOH A:764	BINDING SITE FOR RESIDUE PGE A 420
06	AC6	SOFTWARE	HIS A:19 , ARG A:21 , ASN A:45 , THR A:110 , THR A:111 , ALA A:253 , HIS A:255 , ALA A:267	BINDING SITE FOR RESIDUE ACY A 423
07	AC7	SOFTWARE	HIS B:17 , HIS B:19 , KCX B:103 , ASP B:251 , ZN B:404 , HOH B:1334	BINDING SITE FOR RESIDUE ZN B 403
08	AC8	SOFTWARE	KCX B:103 , HIS B:140 , HIS B:178 , ZN B:403 , ACY B:428 , HOH B:435 , HOH B:1334	BINDING SITE FOR RESIDUE ZN B 404
09	AC9	SOFTWARE	GLY A:214 , GLY A:215 , CYS B:264 , GLY B:265 , BME B:417 , HOH B:453	BINDING SITE FOR RESIDUE BME B 413
10	BC1	SOFTWARE	HIS B:255 , CYS B:266 , BME B:413 , HOH B:444 , HOH B:1152	BINDING SITE FOR RESIDUE BME B 417
11	BC2	SOFTWARE	LYS B:173 , ASP B:193 , TYR B:194 , GLN B:302 , PHE B:303	BINDING SITE FOR RESIDUE PG4 B 419
12	BC3	SOFTWARE	HIS B:19 , ARG B:21 , ASN B:45 , HIS B:255 , ALA B:267 , HOH B:371 , ACY B:428 , HOH B:575 , HOH B:1023	BINDING SITE FOR RESIDUE ACY B 425
13	BC4	SOFTWARE	KCX B:103 , TYR B:105 , HIS B:140 , HOH B:371 , ZN B:404 , ACY B:425 , HOH B:435 , HOH B:575 , HOH B:1334	BINDING SITE FOR RESIDUE ACY B 428
14	BC5	SOFTWARE	HIS C:17 , HIS C:19 , KCX C:103 , ASP C:251 , ZN C:406 , HOH C:1333	BINDING SITE FOR RESIDUE ZN C 405
15	BC6	SOFTWARE	KCX C:103 , HIS C:140 , HIS C:178 , ZN C:405 , HOH C:1333	BINDING SITE FOR RESIDUE ZN C 406
16	BC7	SOFTWARE	ARG C:228	BINDING SITE FOR RESIDUE CL C 409
17	BC8	SOFTWARE	CYS C:264 , BME C:416 , GLY D:214 , GLY D:215	BINDING SITE FOR RESIDUE BME C 412
18	BC9	SOFTWARE	CYS C:266 , BME C:412 , HOH C:786	BINDING SITE FOR RESIDUE BME C 416
19	CC1	SOFTWARE	LYS C:173 , ASP C:193 , PHE C:303 , HOH C:688 , HOH C:744	BINDING SITE FOR RESIDUE PGE C 421
20	CC2	SOFTWARE	HIS C:19 , ARG C:21 , ASN C:45 , THR C:111 , ALA C:253 , HIS C:255 , ALA C:267	BINDING SITE FOR RESIDUE ACY C 424
21	CC3	SOFTWARE	HIS D:17 , HIS D:19 , KCX D:103 , ASP D:251 , ZN D:408 , HOH D:925	BINDING SITE FOR RESIDUE ZN D 407
22	CC4	SOFTWARE	KCX D:103 , HIS D:140 , HIS D:178 , ZN D:407 , ACY D:427 , HOH D:435 , HOH D:925	BINDING SITE FOR RESIDUE ZN D 408
23	CC5	SOFTWARE	GLY C:214 , GLY C:215 , CYS D:264 , GLY D:265 , BME D:418 , HOH D:452	BINDING SITE FOR RESIDUE BME D 414
24	CC6	SOFTWARE	HIS D:255 , CYS D:266 , BME D:414 , ACY D:426	BINDING SITE FOR RESIDUE BME D 418
25	CC7	SOFTWARE	GLY D:134 , LYS D:173 , ASP D:193 , TYR D:194 , GLN D:302 , PHE D:303 , GLY D:305 , HOH D:887	BINDING SITE FOR RESIDUE PG4 D 422
26	CC8	SOFTWARE	HIS D:19 , ARG D:21 , ASN D:45 , HIS D:255 , ALA D:267 , BME D:418 , ACY D:427	BINDING SITE FOR RESIDUE ACY D 426
27	CC9	SOFTWARE	ASN D:45 , KCX D:103 , TYR D:105 , HIS D:140 , ZN D:408 , ACY D:426 , HOH D:435 , HOH D:671 , HOH D:925 , HOH D:1119	BINDING SITE FOR RESIDUE ACY D 427

(no "SS Bond" information available for 3JZE)

Asymmetric Unit

No.	Residues
1	Leu A:223	-	Pro A:224
2	Leu B:223	-	Pro B:224
3	Leu C:223	-	Pro C:224
4	Leu D:223	-	Pro D:224

(no "SAP(SNP)/Variant" information available for 3JZE)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DIHYDROOROTASE_1	PS00482	Dihydroorotase signature 1.	PYRC_SALTY	15-23	4	A:15-23 B:15-23 C:15-23 D:15-23
2	DIHYDROOROTASE_2	PS00483	Dihydroorotase signature 2.	PYRC_SALTY	249-260	4	A:249-260 B:249-260 C:249-260 D:249-260

Biological Unit 1 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DIHYDROOROTASE_1	PS00482	Dihydroorotase signature 1.	PYRC_SALTY	15-23	4	A:15-23 B:15-23 C:15-23 D:15-23
2	DIHYDROOROTASE_2	PS00483	Dihydroorotase signature 2.	PYRC_SALTY	249-260	4	A:249-260 B:249-260 C:249-260 D:249-260

Biological Unit 2 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	DIHYDROOROTASE_1	PS00482	Dihydroorotase signature 1.	PYRC_SALTY	15-23	4	A:15-23 B:15-23 C:15-23 D:15-23
2	DIHYDROOROTASE_2	PS00483	Dihydroorotase signature 2.	PYRC_SALTY	249-260	4	A:249-260 B:249-260 C:249-260 D:249-260

(no "Exon" information available for 3JZE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:344
 aligned with PYRC_SALTY | P06204 from UniProtKB/Swiss-Prot  Length:348

    Alignment length:344
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344    
           PYRC_SALTY     5 SQVLKIRRPDDWHVHLRDGDMLKTVVPYTSEIYGRAIVMPNLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCYLTDSLDADELERGFHEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKLGIPLLVHGEVTHADVDIFDREARFIDTVMEPLRQRLTALKVVFEHITTKDAAQYVRDGNDYLAATITPQHLMFNRNDMLVGGIRPHLYCLPILKRNIHQQALRELVASGFTRAFLGTDSAPHSRHRKETSCGCAGCFNAPSALGSYAAVFEEMNALAHFEAFCSLNGPQFYGLPMNTGWVELVRDEQQIPGNIALADDSLVPFLAGETVRWSVKK 348
               SCOP domains d3jzea_ A: automated matches                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 3jzeA00 A:5-348 Metal-dependent hydrolases                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeee...hhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhh.......eeeeeee.....hhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhh..eee.........hhhhhhhhhhhhhhhhhhhhh....eee....hhhhhhhhhh....eeeeehhhhhhhhhhhhhh...hhhhh......hhhhhhhhhhhhhh....eee.......hhhhhh............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh......eeeee...ee....ee....ee.......ee..ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------DIHYDROOR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DIHYDROOROTA---------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jze A   5 SQVLKIRRPDDWHVHLRDGDMLKTVVPYTSEIYGRAIVMPNLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCYLTDSLDADELERGFHEGVFTAAkLYPANATTNSSHGVTSVDAIMPVLERMEKLGIPLLVHGEVTHADVDIFDREARFIDTVMEPLRQRLTALKVVFEHITTKDAAQYVRDGNDYLAATITPQHLMFNRNDMLVGGIRPHLYCLPILKRNIHQQALRELVASGFTRAFLGTDSAPHSRHRKETSCGCAGCFNAPSALGSYAAVFEEMNALAHFEAFCSLNGPQFYGLPMNTGWVELVRDEQQIPGNIALADDSLVPFLAGETVRWSVKK 348
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344    
                                                                                                                            103-KCX

Chain B from PDB  Type:PROTEIN  Length:342
 aligned with PYRC_SALTY | P06204 from UniProtKB/Swiss-Prot  Length:348

    Alignment length:342
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345  
           PYRC_SALTY     6 QVLKIRRPDDWHVHLRDGDMLKTVVPYTSEIYGRAIVMPNLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCYLTDSLDADELERGFHEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKLGIPLLVHGEVTHADVDIFDREARFIDTVMEPLRQRLTALKVVFEHITTKDAAQYVRDGNDYLAATITPQHLMFNRNDMLVGGIRPHLYCLPILKRNIHQQALRELVASGFTRAFLGTDSAPHSRHRKETSCGCAGCFNAPSALGSYAAVFEEMNALAHFEAFCSLNGPQFYGLPMNTGWVELVRDEQQIPGNIALADDSLVPFLAGETVRWSVK 347
               SCOP domains d3jzeb_ B: automated matches                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 3jzeB00 B:6-347 Metal-dependent hydrolases                                                                                                                                                                                                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee...eeee...hhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhh.......eeeeeee.....hhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhh..eee.........hhhhhhhhhhhhhhhhhhhhh....eee....hhhhhhhhhh....eeeeehhhhhhhhhhhhhh...hhhhh......hhhhhhhhhhhhhh....eee.......hhhhhh............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh......eeeee...ee....ee....ee.......ee..ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------DIHYDROOR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DIHYDROOROTA--------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3jze B   6 QVLKIRRPDDWHVHLRDGDMLKTVVPYTSEIYGRAIVMPNLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCYLTDSLDADELERGFHEGVFTAAkLYPANATTNSSHGVTSVDAIMPVLERMEKLGIPLLVHGEVTHADVDIFDREARFIDTVMEPLRQRLTALKVVFEHITTKDAAQYVRDGNDYLAATITPQHLMFNRNDMLVGGIRPHLYCLPILKRNIHQQALRELVASGFTRAFLGTDSAPHSRHRKETSCGCAGCFNAPSALGSYAAVFEEMNALAHFEAFCSLNGPQFYGLPMNTGWVELVRDEQQIPGNIALADDSLVPFLAGETVRWSVK 347
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345  
                                                                                                                           103-KCX

Chain C from PDB  Type:PROTEIN  Length:344
 aligned with PYRC_SALTY | P06204 from UniProtKB/Swiss-Prot  Length:348

    Alignment length:344
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344    
           PYRC_SALTY     5 SQVLKIRRPDDWHVHLRDGDMLKTVVPYTSEIYGRAIVMPNLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCYLTDSLDADELERGFHEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKLGIPLLVHGEVTHADVDIFDREARFIDTVMEPLRQRLTALKVVFEHITTKDAAQYVRDGNDYLAATITPQHLMFNRNDMLVGGIRPHLYCLPILKRNIHQQALRELVASGFTRAFLGTDSAPHSRHRKETSCGCAGCFNAPSALGSYAAVFEEMNALAHFEAFCSLNGPQFYGLPMNTGWVELVRDEQQIPGNIALADDSLVPFLAGETVRWSVKK 348
               SCOP domains d3jzec_ C: automated matches                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 3jzeC00 C:5-348 Metal-dependent hydrolases                                                                                                                                                                                                                                                                                                               CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...eeee...hhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhh......eeeeeee.....hhhhhhhhhhh..eeeeee..................hhhhhhhhhhhh..eee.........hhhhhhhhhhhhhhhhhhhhh....eee....hhhhhhhhhhh...eeeeehhhhhhhhhhhhhh...hhhhh......hhhhhhhhhhhhhh....eee.......hhhhhh............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh......eeeee...ee....ee....ee.......ee..ee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------DIHYDROOR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DIHYDROOROTA---------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jze C   5 SQVLKIRRPDDWHVHLRDGDMLKTVVPYTSEIYGRAIVMPNLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCYLTDSLDADELERGFHEGVFTAAkLYPANATTNSSHGVTSVDAIMPVLERMEKLGIPLLVHGEVTHADVDIFDREARFIDTVMEPLRQRLTALKVVFEHITTKDAAQYVRDGNDYLAATITPQHLMFNRNDMLVGGIRPHLYCLPILKRNIHQQALRELVASGFTRAFLGTDSAPHSRHRKETSCGCAGCFNAPSALGSYAAVFEEMNALAHFEAFCSLNGPQFYGLPMNTGWVELVRDEQQIPGNIALADDSLVPFLAGETVRWSVKK 348
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344    
                                                                                                                            103-KCX

Chain D from PDB  Type:PROTEIN  Length:342
 aligned with PYRC_SALTY | P06204 from UniProtKB/Swiss-Prot  Length:348

    Alignment length:342
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345  
           PYRC_SALTY     6 QVLKIRRPDDWHVHLRDGDMLKTVVPYTSEIYGRAIVMPNLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCYLTDSLDADELERGFHEGVFTAAKLYPANATTNSSHGVTSVDAIMPVLERMEKLGIPLLVHGEVTHADVDIFDREARFIDTVMEPLRQRLTALKVVFEHITTKDAAQYVRDGNDYLAATITPQHLMFNRNDMLVGGIRPHLYCLPILKRNIHQQALRELVASGFTRAFLGTDSAPHSRHRKETSCGCAGCFNAPSALGSYAAVFEEMNALAHFEAFCSLNGPQFYGLPMNTGWVELVRDEQQIPGNIALADDSLVPFLAGETVRWSVK 347
               SCOP domains d3jzed_ D: automated matches                                                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains 3jzeD00 D:6-347 Metal-dependent hydrolases                                                                                                                                                                                                                                                                                                             CATH domains
           Pfam domains (1) ----Amidohydro_1-3jzeD01 D:10-326                                                                                                                                                                                                                                                                                                --------------------- Pfam domains (1)
           Pfam domains (2) ----Amidohydro_1-3jzeD02 D:10-326                                                                                                                                                                                                                                                                                                --------------------- Pfam domains (2)
           Pfam domains (3) ----Amidohydro_1-3jzeD03 D:10-326                                                                                                                                                                                                                                                                                                --------------------- Pfam domains (3)
           Pfam domains (4) ----Amidohydro_1-3jzeD04 D:10-326                                                                                                                                                                                                                                                                                                --------------------- Pfam domains (4)
         Sec.struct. author .eeeee...eeee...hhhhhhhhhhhhhh...eeee.........hhhhhhhhhhhhhhhh......eeeeeee.....hhhhhhhhhhh..eeeeee...............hhhhhhhhhhhhhhh..eee.........hhhhhhhhhhhhhhhhhhhhh....eee....hhhhhhhhhh....eeeeehhhhhhhhhhhhhh...hhhhh......hhhhhhhhhhhhhh....eee.......hhhhhh............hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh......eeeee...ee....ee....ee.......ee..ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---------DIHYDROOR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DIHYDROOROTA--------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3jze D   6 QVLKIRRPDDWHVHLRDGDMLKTVVPYTSEIYGRAIVMPNLASPITTVDAAIAYRQRILDAVPAGHDFTPLMTCYLTDSLDADELERGFHEGVFTAAkLYPANATTNSSHGVTSVDAIMPVLERMEKLGIPLLVHGEVTHADVDIFDREARFIDTVMEPLRQRLTALKVVFEHITTKDAAQYVRDGNDYLAATITPQHLMFNRNDMLVGGIRPHLYCLPILKRNIHQQALRELVASGFTRAFLGTDSAPHSRHRKETSCGCAGCFNAPSALGSYAAVFEEMNALAHFEAFCSLNGPQFYGLPMNTGWVELVRDEQQIPGNIALADDSLVPFLAGETVRWSVK 347
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345  
                                                                                                                           103-KCX

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: Metallo-dependent hydrolases (273)

Family: Dihydroorotase (16)

Protein domain: automated matches (2)

Salmonella enterica [TaxId: 99287] (1)

1a	d3jzea_	A:
1b	d3jzeb_	B:
1c	d3jzec_	C:
1d	d3jzed_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Metal-dependent hydrolases (190)

Enterica serovar typhimurium str (Salmonella enterica subsp) (1)

1a	3jzeB00	B:6-347
1b	3jzeD00	D:6-347
1c	3jzeA00	A:5-348
1d	3jzeC00	C:5-348

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Amidohydrolase (126)

Family: Amidohydro_1 (28)

Salmonella typhimurium (1)

1a	Amidohydro_1-3jzeD01	D:10-326
1b	Amidohydro_1-3jzeD02	D:10-326
1c	Amidohydro_1-3jzeD03	D:10-326
1d	Amidohydro_1-3jzeD04	D:10-326

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (PYRC_SALTY | P06204)

molecular function
	GO:0004151	dihydroorotase activity	Catalysis of the reaction: (S)-dihydroorotate + H(2)O = N-carbamoyl-L-aspartate + H(+).
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016812	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides	Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a cyclic amide.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0044205	'de novo' UMP biosynthetic process	The chemical reactions and pathways resulting in the formation of UMP, uridine monophosphate, starting with the synthesis of (S)-dihydroorotate from bicarbonate; UMP biosynthesis may either occur via reduction by quinone, NAD(+) or oxygen.
	GO:0019856	pyrimidine nucleobase biosynthetic process	The chemical reactions and pathways resulting in the formation of pyrimidine nucleobases, 1,3-diazine, organic nitrogenous bases.
	GO:0006221	pyrimidine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.

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	3jze
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 32)

Sites (27, 27)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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