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(-) Description

Title :  CRYSTAL STRUCTURE OF SUSD SUPERFAMILY PROTEIN (YP_001298690.1) FROM BACTEROIDES VULGATUS ATCC 8482 AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  22 Sep 09  (Deposition) - 06 Oct 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Yp_001298690. 1, Susd Superfamily Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Ragb, Susd And Hypothetical Proteins, Unknown Function, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Susd Superfamily Protein (Yp_001298690. 1) From Bacteroides Vulgatus Atcc 8482 At 2. 0 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUSD SUPERFAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BVU_1379, YP_001298690.1
    Organism Scientific: BACTEROIDES VULGATUS ATCC 8482
    Organism Taxid: 435590
    Strain: ATCC 8482 / DSM 1447 / NCTC 11154
    Synonym: PUTATIVE OUTER MEMBRANE PROTEIN, PROBABLY INVOLVED IN NUTRIENT BINDING

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2MSE9Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:291 , ASP A:404 , ASP A:406 , HOH A:729 , HOH A:738 , HOH A:740BINDING SITE FOR RESIDUE MG A 1

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JYS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3JYS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JYS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JYS)

(-) Exons   (0, 0)

(no "Exon" information available for 3JYS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:479
 aligned with A6L054_BACV8 | A6L054 from UniProtKB/TrEMBL  Length:535

    Alignment length:498
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527        
         A6L054_BACV8    38 DKAYTDAESYTKGLHKIYSVWALSGQDGSSSSDISGLDAGNTALLRCWWTLQEQPTDEMKNAWNDAWCTEVNYMTWTTNKVEPIEGVYQRCMYIVALVNEFLKNIPNAPESIDKESYIAQARFNRAFAYYVLMDMFALPPFITEKNYSIEPAPLSREDLFNWIEAELNEIKPNLPSPRSEYGVADQAVASALLARMYLNAEIYTGKARYTECINACNEVIKAGYQLADNYADLFKADNGENPDTKKEIIYPIIFDGDKTQSWGMAAIIIGARGAEDKDVLLAHSGVDQGWAGFRATSNLVHLFDFQNDEEPKASEIQDKRGIFYDKGRSIDITSSVSGTFETEGWSVFKFSNLNSNGQPGKNTLWVDTDFPMFRLGDIYLMYAEAVARGGEGSKASAVEYINALRKRAYGDDKHNISENWLEENNFRNLLDERGRELYWEGIRRTDLVRFDLLTSGSYTWDFKGGINTGVGVNKRYNVYPIPVTDLTVNGNLQQNEGY 535
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains SusD-like_3-3jysA02 A:38-                235                                                                                                                                                          -----------------------------------------------SusD-3jysA01    A:283-535                                                                                                                                                                                                                                     Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh.....----------------.hhhhhhhhhhhh.....ee...hhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh.......hhhhhh.....hhhhhh.eeeee.....---.hhhhhhhhh.....hhhhhhhhhh.......ee.hhhhhhh.........hhhhh......ee.....................ee......................eeeeehhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh......hhhhhhh..hhhhhhhhhhhhh...hhhhhhhhh...........hhhhh......hhhhhh...hhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3jys A  38 DKAYTDAESYTKGLHKIYSVWALSG----------------TALLRCWWTLQEQPTDEmKNAWNDAWCTEVNYmTWTTNKVEPIEGVYQRCmYIVALVNEFLKNIPNAPESIDKESYIAQARFNRAFAYYVLmDmFALPPFITEKNYSIEPAPLSREDLFNWIEAELNEIKPNLPSPRSEYGVADQAVASALLARmYLNAEIYTGKARYTECINACNEVIKAGYQLADNYADLFKADNGENPDTKKEIIYPIIFDGD---SWGmAAIIIGARGAEDKDVLLAHSGVDQGWAGFRATSNLVHLFDFQNDEEPKASEIQDKRGIFYDKGRSIDITSSVSGTFETEGWSVFKFSNLNSNGQPGKNTLWVDTDFPmFRLGDIYLmYAEAVARGGEGSKASAVEYINALRKRAYGDDKHNISENWLEENNFRNLLDERGRELYWEGIRRTDLVRFDLLTSGSYTWDFKGGINTGVGVNKRYNVYPIPVTDLTVNGNLQQNEGY 535
                                    47        57    |    -         - |      87        97       107   |   117       127 |     137       147       157       167  | |  177       187       197       207       217       227     | 237       247       257       267       277       287      |  -|  |   307       317       327       337       347       357       367       377       387       397       407 |     417|      427       437       447       457       467       477       487       497       507       517       527        
                                                   62               79               96-MSE        111-MSE           129-MSE                                  170-MSE                                                        233-MSE                                                      294 298  |                                                                                                         409-MSE  418-MSE                                                                                                                 
                                                                                                                                                                172-MSE                                                                                                                          301-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JYS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JYS)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: TPR (230)

(-) Gene Ontology  (1, 1)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (A6L054_BACV8 | A6L054)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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