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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE PHOSPHOHEPTOSE ISOMERASE (YP_001815198.1) FROM EXIGUOBACTERIUM SP. 255-15 AT 1.95 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  18 Sep 09  (Deposition) - 29 Sep 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Yp_001815198. 1, Putative Phosphoheptose Isomerase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Putative Phosphoheptose Isomerase (Yp_001815198. 1) From Exiguobacterium Sp. 255-15 At 1. 95 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE PHOSPHOHEPTOSE ISOMERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: EXIG_2733, YP_001815198.1
    Organism Scientific: EXIGUOBACTERIUM SIBIRICUM 255-15
    Organism Taxid: 262543
    Strain: DSM 17290 / JCM 13490 / 255-15

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:75 , ALA A:76 , HOH A:310BINDING SITE FOR RESIDUE CL A 170
2AC2SOFTWAREASP A:100 , HIS A:103 , THR A:104 , TYR A:106 , ARG A:120 , HOH A:236 , HOH A:266 , HOH A:295BINDING SITE FOR RESIDUE GOL A 171
3AC3SOFTWAREHIS B:75 , HOH B:257BINDING SITE FOR RESIDUE CL B 170
4AC4SOFTWARETHR B:115 , GLU B:116BINDING SITE FOR RESIDUE CL B 171

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JX9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3JX9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JX9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JX9)

(-) Exons   (0, 0)

(no "Exon" information available for 3JX9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:169
 aligned with B1YEL3_EXIS2 | B1YEL3 from UniProtKB/TrEMBL  Length:169

    Alignment length:169
                             1                                                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159         
         B1YEL3_EXIS2     - -MLKILATQFNGKLQTLTKQEDELFDVVRLLAQALVGQGKVYLDAYGEFEGLYPMLSDGPDQMKRVTKIKDHKTLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTETLERSIAPLALKFDKGLLPAEDGSRHGLPSLALGAFLLTHILTQLQEMTEEW 168
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhh.......eee...........eeeeee....hhhhhhhhhhhhhhh..eeeee......hhhhh...ee.......ee.....ee..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jx9 A   0 GmLKILATQFNGKLQTLTKQEDELFDVVRLLAQALVGQGKVYLDAYGEFEGLYPmLSDGPDQmKRVTKIKDHKTLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTETLERSIAPLALKFDKGLLPAEDGSRHGLPSLALGAFLLTHILTQLQEmTEEW 168
                             |       9        19        29        39        49    |   59  |     69        79        89        99       109       119       129       139       149       159    |    
                             |                                                   54-MSE  62-MSE                                                                                               164-MSE
                             1-MSE                                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:169
 aligned with B1YEL3_EXIS2 | B1YEL3 from UniProtKB/TrEMBL  Length:169

    Alignment length:169
                             1                                                                                                                                                                       
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159         
         B1YEL3_EXIS2     - -MLKILATQFNGKLQTLTKQEDELFDVVRLLAQALVGQGKVYLDAYGEFEGLYPMLSDGPDQMKRVTKIKDHKTLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTETLERSIAPLALKFDKGLLPAEDGSRHGLPSLALGAFLLTHILTQLQEMTEEW 168
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -DUF2529-3jx9B01 B:1-165                                                                                                                                              --- Pfam domains (1)
           Pfam domains (2) -DUF2529-3jx9B02 B:1-165                                                                                                                                              --- Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh......eee...........eeeeee....hhhhhhhhhhhhhhh..eeeee......hhhhh...ee.......ee.....ee..hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jx9 B   0 GmLKILATQFNGKLQTLTKQEDELFDVVRLLAQALVGQGKVYLDAYGEFEGLYPmLSDGPDQmKRVTKIKDHKTLHAVDRVLIFTPDTERSDLLASLARYDAWHTPYSIITLGDVTETLERSIAPLALKFDKGLLPAEDGSRHGLPSLALGAFLLTHILTQLQEmTEEW 168
                             |       9        19        29        39        49    |   59  |     69        79        89        99       109       119       129       139       149       159    |    
                             1-MSE                                               54-MSE  62-MSE                                                                                               164-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JX9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JX9)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: SIS (53)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3JX9)

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