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(-) Description

Title :  PUTATIVE GNAT-FAMILY ACETYLTRANSFERASE FROM BORDETELLA PERTUSSIS.
 
Authors :  J. Osipiuk, R. Wu, G. Cobb, A. Joachimiak, Midwest Center For Struct Genomics (Mcsg)
Date :  15 Sep 09  (Deposition) - 22 Sep 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.11
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C  (2x)
Keywords :  Structural Genomics, Apc60242, Gnat Family, Acetyltransferase, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, R. Wu, G. Cobb, A. Joachimiak
X-Ray Crystal Structure Of Putative Gnat-Family Acetyltransferase From Bordetella Pertussis.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROBABLE GNAT-FAMILY ACETYLTRANSFERASE
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG19B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BP0858
    Organism Scientific: BORDETELLA PERTUSSIS
    Organism Taxid: 520
    Strain: TOHAMA I

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): AB 
Biological Unit 2 (2x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 21)

Asymmetric Unit (2, 21)
No.NameCountTypeFull Name
1MSE15Mod. Amino AcidSELENOMETHIONINE
2SO46Ligand/IonSULFATE ION
Biological Unit 1 (2, 15)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2SO45Ligand/IonSULFATE ION
Biological Unit 2 (2, 12)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2SO42Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREVAL A:102 , GLN A:107 , GLY A:108 , LEU A:111 , ALA A:112 , HOH A:183BINDING SITE FOR RESIDUE SO4 A 302
2AC2SOFTWAREARG A:84 , ARG A:86 , PHE A:160 , HOH A:268BINDING SITE FOR RESIDUE SO4 A 306
3AC3SOFTWAREVAL B:102 , GLN B:107 , GLY B:108 , ARG B:109 , GLY B:110 , LEU B:111 , ALA B:112 , HOH B:175 , HOH B:179 , HOH B:190 , HOH B:220BINDING SITE FOR RESIDUE SO4 B 303
4AC4SOFTWAREARG B:84 , ARG B:86 , PHE B:160 , HOH B:210 , HOH B:235 , HOH B:239BINDING SITE FOR RESIDUE SO4 B 304
5AC5SOFTWAREARG B:12 , ARG B:76 , ARG B:109BINDING SITE FOR RESIDUE SO4 B 305
6AC6SOFTWAREGLY C:108 , ARG C:109 , GLY C:110 , LEU C:111 , ALA C:112 , HOH C:174 , HOH C:234BINDING SITE FOR RESIDUE SO4 C 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JUW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3JUW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JUW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JUW)

(-) Exons   (0, 0)

(no "Exon" information available for 3JUW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:167
 aligned with Q7VZN9_BORPE | Q7VZN9 from UniProtKB/TrEMBL  Length:172

    Alignment length:167
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       
         Q7VZN9_BORPE     5 RQVLKTDRLVLEPQSMARFDQWFAMERQRDEAGHRDLTEDQAWLRLCARQGMWDAYACGFYYLLDPVSGEMRGEAGFQFRRRGFGPGFDNHPEAAWAVASAHQGRGLAAEAMQALLAHHDRSSGRQRVVALIARSNLPSLRLAERLGFRGYSDVAFDGAAHLLLERA 171
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eeee.hhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh..eeeee......eeeeeeee..............eeeeee.hhhh..hhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhh..eeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3juw A   5 RQVLKTDRLVLEPQSmARFDQWFAmERQRDEAGHRDLTEDQAWLRLCARQGmWDAYACGFYYLLDPVSGEmRGEAGFQFRRRGFGPGFDNHPEAAWAVASAHQGRGLAAEAmQALLAHHDRSSGRQRVVALIARSNLPSLRLAERLGFRGYSDVAFDGAAHLLLERA 171
                                    14     |  24    |   34        44        54 |      64        74|       84        94       104       114 |     124       134       144       154       164       
                                          20-MSE   29-MSE                     56-MSE             75-MSE                                  116-MSE                                                   


Chain B from PDB  Type:PROTEIN  Length:165
 aligned with Q7VZN9_BORPE | Q7VZN9 from UniProtKB/TrEMBL  Length:172

    Alignment length:167
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       
         Q7VZN9_BORPE     5 RQVLKTDRLVLEPQSMARFDQWFAMERQRDEAGHRDLTEDQAWLRLCARQGMWDAYACGFYYLLDPVSGEMRGEAGFQFRRRGFGPGFDNHPEAAWAVASAHQGRGLAAEAMQALLAHHDRSSGRQRVVALIARSNLPSLRLAERLGFRGYSDVAFDGAAHLLLERA 171
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee....eeee.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh..eeeee......eeeeeeee..............eeeeee.hhhh..hhhhhhhhhhhhhhhhhh--..eeeeee..hhhhhhhhhhh..eeeeeee....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3juw B   5 RQVLKTDRLVLEPQSmARFDQWFAmERQRDEAGHRDLTEDQAWLRLCARQGmWDAYACGFYYLLDPVSGEmRGEAGFQFRRRGFGPGFDNHPEAAWAVASAHQGRGLAAEAmQALLAHHDRSS--QRVVALIARSNLPSLRLAERLGFRGYSDVAFDGAAHLLLERA 171
                                    14     |  24    |   34        44        54 |      64        74|       84        94       104       114 |     124  |  | 134       144       154       164       
                                          20-MSE   29-MSE                     56-MSE             75-MSE                                  116-MSE    127  |                                         
                                                                                                                                                       130                                         


Chain C from PDB  Type:PROTEIN  Length:164
 aligned with Q7VZN9_BORPE | Q7VZN9 from UniProtKB/TrEMBL  Length:172

    Alignment length:167
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       
         Q7VZN9_BORPE     5 RQVLKTDRLVLEPQSMARFDQWFAMERQRDEAGHRDLTEDQAWLRLCARQGMWDAYACGFYYLLDPVSGEMRGEAGFQFRRRGFGPGFDNHPEAAWAVASAHQGRGLAAEAMQALLAHHDRSSGRQRVVALIARSNLPSLRLAERLGFRGYSDVAFDGAAHLLLERA 171
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -------Acetyltransf_3-3juwC01 C:12-153                                                                                                               ------------------ Pfam domains (1)
           Pfam domains (2) -------Acetyltransf_3-3juwC02 C:12-153                                                                                                               ------------------ Pfam domains (2)
           Pfam domains (3) -------Acetyltransf_3-3juwC03 C:12-153                                                                                                               ------------------ Pfam domains (3)
         Sec.struct. author ...ee....eeee.hhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh..eeeee......eeeeeeee..............eeeeee.hhhh..hhhhhhhhhhhhhhhhh---..eeeeee..hhhhhhhhhhh..eeeeeeee..eeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3juw C   5 RQVLKTDRLVLEPQSmARFDQWFAmERQRDEAGHRDLTEDQAWLRLCARQGmWDAYACGFYYLLDPVSGEmRGEAGFQFRRRGFGPGFDNHPEAAWAVASAHQGRGLAAEAmQALLAHHDRS---QRVVALIARSNLPSLRLAERLGFRGYSDVAFDGAAHLLLERA 171
                                    14     |  24    |   34        44        54 |      64        74|       84        94       104       114 |     124 |   | 134       144       154       164       
                                          20-MSE   29-MSE                     56-MSE             75-MSE                                  116-MSE   126 130
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JUW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JUW)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: Acetyltrans (109)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q7VZN9_BORPE | Q7VZN9)
molecular function
    GO:0008080    N-acetyltransferase activity    Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.

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