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(-) Description

Title :  CRYSTAL STRUCTURE OF AMINOTRANSFERASE (NP_283882.1) FROM NEISSERIA MENINGITIDIS Z2491 AT 1.91 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  14 Sep 09  (Deposition) - 22 Sep 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Np_283882. 1, Aminotransferase, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Aminotransferase (Np_283882. 1) From Neisseria Meningitidis Z2491 At 1. 91 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - AMINOTRANSFERASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NMA1113, NP_283882.1
    Organism Scientific: NEISSERIA MENINGITIDIS Z2491
    Organism Taxid: 122587

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 26)

Asymmetric/Biological Unit (6, 26)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CA1Ligand/IonCALCIUM ION
3GOL9Ligand/IonGLYCEROL
4LLP2Mod. Amino Acid2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
5MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
6MSE10Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETYR A:11 , PRO A:12 , PHE A:13 , GLY A:37 , GLU A:38 , ARG A:100 , TYR A:129 , GLN A:130 , ARG A:373 , HOH A:562 , HOH A:611 , TYR B:61BINDING SITE FOR RESIDUE MES A 400
02AC2SOFTWAREHIS A:144 , PHE A:145 , HOH A:621 , HOH A:713BINDING SITE FOR RESIDUE GOL A 396
03AC3SOFTWAREARG A:80 , ARG A:81 , LYS A:218 , GLU A:292 , HOH A:442 , HOH A:666BINDING SITE FOR RESIDUE GOL A 397
04AC4SOFTWAREGLY A:84 , LEU A:85 , THR A:86 , ARG A:233 , HOH A:496 , HOH A:519 , HOH A:620BINDING SITE FOR RESIDUE GOL A 398
05AC5SOFTWARETYR A:61 , PHE B:13 , GLY B:37 , GLU B:38 , ARG B:100 , TYR B:129 , ARG B:373 , HOH B:470 , HOH B:475 , HOH B:496 , HOH B:668BINDING SITE FOR RESIDUE MES B 400
06AC6SOFTWAREGLN B:108 , LEU B:111 , ASN B:112 , HOH B:623 , HOH B:624 , HOH B:625BINDING SITE FOR RESIDUE CA B 396
07AC7SOFTWAREGLN A:7 , LEU A:137 , HOH A:495 , ARG B:308BINDING SITE FOR RESIDUE ACT B 397
08AC8SOFTWARELYS B:9 , ARG B:15 , ARG B:360 , ASP B:361BINDING SITE FOR RESIDUE ACT B 398
09AC9SOFTWAREALA B:65 , ARG B:71 , ASP B:90 , LEU B:267 , HOH B:606 , HOH B:643BINDING SITE FOR RESIDUE GOL B 399
10BC1SOFTWAREARG B:80 , ARG B:81 , LYS B:218 , GLU B:292 , HOH B:423 , HOH B:662BINDING SITE FOR RESIDUE GOL B 401
11BC2SOFTWAREHIS B:144 , PHE B:145 , ILE B:160 , THR B:362 , HOH B:622 , HOH B:684BINDING SITE FOR RESIDUE GOL B 402
12BC3SOFTWAREGLY B:22 , ASP B:334 , ALA B:339 , PHE B:340 , TYR B:394 , HOH B:527 , HOH B:688BINDING SITE FOR RESIDUE GOL B 403
13BC4SOFTWARETYR B:82 , ASP B:83 , GLN B:224 , GLN B:228BINDING SITE FOR RESIDUE GOL B 404
14BC5SOFTWAREASP B:361 , THR B:362 , GLY B:365 , ASN B:366 , GLU B:369 , HOH B:675 , HOH B:706BINDING SITE FOR RESIDUE GOL B 405

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JTX)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Asn A:126 -Pro A:127
2Ala A:150 -Pro A:151
3Ser A:175 -Pro A:176
4Asn A:178 -Pro A:179
5Asn B:126 -Pro B:127
6Ala B:150 -Pro B:151
7Ser B:175 -Pro B:176
8Asn B:178 -Pro B:179

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JTX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JTX)

(-) Exons   (0, 0)

(no "Exon" information available for 3JTX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:393
                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d3jtxa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhh..hhhhhhhhhh...........ee..........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh..........eeee.hhhhhhhhhhhhhh......eeeeee..hhhhhhhhhhh..eeeeee........hhhhhhhhhhhheeeeeee..........hhhhhhhhhhhhhhhh.eeeee..............hhhhhhhhh......eeeeee......hhhhh.eeeeehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee....hhhhhhhhhhhhhhee.ee.hhhh...........eeeee...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jtx A   0 GmNTLLKQLKPYPFARLHEAmQGISAPEGmEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLmFTSLSkRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAmSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQVFDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLYR 395
                             |       9        19|       29        39        49        59        69        79        89        99       109   ||  122       132       142       152       162       172       182       192       202       212       222       232     | 242 |     252       262       272    |  282       292       302       312       322       332       342       352       362       372       382       392   
                             |                 20-MSE   29-MSE                                                                             113|                                                                                                                      238-MSE |                              277-MSE                                                                                                                  
                             1-MSE                                                                                                          117                                                                                                                            244-LLP                                                                                                                                                   


Chain B from PDB  Type:PROTEIN  Length:393
                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains d3jtxb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh....hhhhhhhhhhh..........ee..........hhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhh..........eeee.hhhhhhhhhhhhhh.......eeeeee..hhhhhhhhhhh..eeeeee........hhhhhhhhhhh.eeeeeee..........hhhhhhhhhhhhhhhh.eeeee..............hhhhhhhhh......eeeeee......hhhhh.eeeeehhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee....hhhhhhhhhhhhhhee.ee.hhhh...........eeeee...hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jtx B   1 mNTLLKQLKPYPFARLHEAmQGISAPEGmEAVPLHIGEPKHPTPKVITDALTASLHELEKYPLTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVLNPVGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVWKRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLmFTSLSkRSNVPGLRSGFVAGDAELLKNFLLYRTYHGSAmSIPVQRASIAAWDDEQHVIDNRRLYQEKFERVIPILQQVFDVKLPDASFYIWLKVPDGDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVADVATCVKAAEDIVSLYR 395
                            |       10        20        30        40        50        60        70        80        90       100       110   ||  122       132       142       152       162       172       182       192       202       212       222       232     | 242 |     252       262       272    |  282       292       302       312       322       332       342       352       362       372       382       392   
                            1-MSE             20-MSE   29-MSE                                                                              114|                                                                                                                      238-MSE |                              277-MSE                                                                                                                  
                                                                                                                                            117                                                                                                                            244-LLP
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JTX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3JTX)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3JTX)

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  Cis Peptide Bonds
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    Asn A:126 - Pro A:127   [ RasMol ]  
    Asn A:178 - Pro A:179   [ RasMol ]  
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    Asn B:178 - Pro B:179   [ RasMol ]  
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