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(-) Description

Title :  CRYSTAL STRUCTURE OF A TRANSCRIPTIONAL REGULATOR HLYU FROM VIBRIO VULNIFICUS CMCP6
 
Authors :  K. Nishi, H. J. Lee, S. Y. Park, J. S. Kim
Date :  12 Sep 09  (Deposition) - 16 Mar 10  (Release) - 16 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Transcription Factor, Hlyu, Rtxa, Dna-Binding, Transcription, Transcription Regulation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Nishi, H. J. Lee, S. Y. Park, S. J. Bae, S. E. Lee, P. D. Adams, J. H. Rhee, J. S. Kim
Crystal Structure Of The Transcriptional Activator Hlyu From Vibrio Vulnificus Cmcp6.
Febs Lett. 2010
PubMed-ID: 20178784  |  Reference-DOI: 10.1016/J.FEBSLET.2010.02.052

(-) Compounds

Molecule 1 - TRANSCRIPTION ACTIVATOR HLYU
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEXHTC
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: VV1_0512
    Organism Scientific: VIBRIO VULNIFICUS
    Organism Taxid: 216895
    Strain: CMCP6

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric/Biological Unit (1, 8)
No.NameCountTypeFull Name
1MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:96
                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 3jthA00 A:1-96 'winged helix' repressor DNA binding domain                                       CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eehhhhhhhhh.hhhhhhhhhhhhhhh..eeee......eeee.hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------ Transcript
                 3jth A   1 MNLKDmEQNSAKAVVLLKAmANERRLQILCmLHNQELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAmIKLLHSLYC  96
                                 |  10        20        30|       40        50        60        70        80      | 90      
                                 6-MSE        20-MSE     31-MSE                                                  87-MSE     


Chain B from PDB  Type:PROTEIN  Length:92
                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3jthB00 B:205-296 'winged helix' repressor DNA binding domain                                CATH domains
               Pfam domains -------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhhhhh.hhhhhhhhhhhhhhh..eeeeee..eeeeee.hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------- Transcript
                 3jth B 205 DmEQNSAKAVVLLKAmANERRLQILCmLHNQELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAmIKLLHSLYC 296
                             |     214     | 224      |234       244       254       264       274       284  |    294  
                           206-MSE       220-MSE    231-MSE                                                 287-MSE
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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