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(-) Description

Title :  SOLVENT-STABLE CHOLESTEROL OXIDASE
 
Authors :  M. Sagermann, A. Ohtaki, K. Newton, N. Doukyu
Date :  09 Sep 09  (Deposition) - 09 Feb 10  (Release) - 31 Mar 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.54
Chains :  Asym./Biol. Unit :  A
Keywords :  Cholsterol, Oxidase, Organic Solvent Stability, Oxygen Channel, Fad, Flavoprotein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Sagermann, A. Ohtaki, K. Newton, N. Doukyu
Structural Characterization Of The Organic Solvent-Stable Cholesterol Oxidase From Chromobacterium Sp. Ds-1.
J. Struct. Biol. V. 170 32 2010
PubMed-ID: 20102741  |  Reference-DOI: 10.1016/J.JSB.2010.01.012

(-) Compounds

Molecule 1 - CHOLESTEROL OXIDASE
    Chains: A
    EC Number: 1.1.3.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21D
    Expression System Strain: BL21
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CHO
    Organism Scientific: CHROMOBACTERIUM SP. DS-1
    Organism Taxid: 507619

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2SUC1Ligand/IonSUCROSE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETRP A:22 , ALA A:58 , GLY A:60 , MET A:61 , MET A:62 , HIS A:63 , ASN A:64 , TRP A:65 , LEU A:68 , THR A:69 , ALA A:106 , PRO A:128 , ALA A:129 , PRO A:130 , LEU A:133 , THR A:134 , GLY A:136 , GLY A:137 , ILE A:141 , GLY A:143 , HIS A:144 , HIS A:201 , SER A:205 , LEU A:206 , ILE A:207 , ARG A:403 , HOH A:547 , HOH A:549 , HOH A:590 , HOH A:595 , HOH A:777BINDING SITE FOR RESIDUE FAD A 541
2AC2SOFTWAREGLU A:118 , LYS A:119 , GLY A:121 , ASN A:227 , TRP A:341 , HOH A:585 , HOH A:611 , HOH A:770 , HOH A:830 , HOH A:831BINDING SITE FOR RESIDUE SUC A 7021

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JS8)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3JS8)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JS8)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JS8)

(-) Exons   (0, 0)

(no "Exon" information available for 3JS8)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:538
 aligned with B5MGF8_9NEIS | B5MGF8 from UniProtKB/TrEMBL  Length:584

    Alignment length:538
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576        
         B5MGF8_9NEIS    47 SQPNNFPAEIPLYKQSFKNWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGVSCPAVVLLDTTRYLTAMSIDASGPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAPGDLTLGGVLAINGHGTAIPAKGERRLAGASYGSISNLVLSLTAVVYDKASGAYALRKFARNDPQIAPLLAHVGRSLIVEATLQAAPNQRLRCQSWFNIPYGEMFAAAGSGGRTFASYLDSAGRVEAIWFPFTSNPWLKVWTVTPNKPLFSRQTDKPFNYPFSDNLPDEVTDLANKILSLGDGKLTPAFGKAQFAAASAGLVATASWDLWGWSKNLLLYVKPTTLRVTANGYAVLTRRENVQRVLNEFVTFYQARVQAYQQQGRYPMNGPVEIRVTGLDDPSEAALSGGVAPALSAIRPRPDHPEWNVAVWLDILTLPGTPYANQFYREIEQWIEANFNGSYAAVRPEWSKGWGYTDQAAWADSAMLQTTIPNAFRAGQPAAANWDAAKAALAAYDPYRLFSSPLLDSLGL 584
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------3js8A01 A:13-88                                                             3js8A02 A:89-216  [code=3.30.465.10, no name defined]                                                                           3js8A03 A:217-490 Vanillyl-alcohol Oxidase; Chain A, domain 3                                                                                                                                                                                                                     -------------------------------------------------- CATH domains
               Pfam domains ------------------------------FAD_binding_4-3js8A02 A:33-178                                                                                                                    ----------------------------------------Chol_subst-bind-3js8A01 A:219-539                                                                                                                                                                                                                                                                                                - Pfam domains
         Sec.struct. author ............eeeeee......eeeeeeee...hhhhhhhhhhhhhhhh.eeeee...................eeeee.......eeee.....eeeeee...hhhhhhhhhhhh.ee..........hhhhhhhh.....................hhhh.eeeeeeeeee....eeeeeeee..hhhhhhhh.......eeeeeeeeee..eeeeeee...hhhhhh........hhhhhhhhh.eeeeee.......eeeeeee........ee......hhhhhh.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhh.........ee..eeeee...hhhhhhhhhhhhhhhhhhhhhhh........eeeeee...hhhhh.......................eeeeeeeee.....hhhhhhhhhhhhhhhhh....eeeee...............hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh......hhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3js8 A   3 SQPNNFPAEIPLYKQSFKNWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGVSCPAVVLLDTTRYLTAMSIDASGPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAPGDLTLGGVLAINGHGTAIPAKGERRLAGASYGSISNLVLSLTAVVYDKASGAYALRKFARNDPQIAPLLAHVGRSLIVEATLQAAPNQRLRCQSWFNIPYGEMFAAAGSGGRTFASYLDSAGRVEAIWFPFTSNPWLKVWTVTPNKPLFSRQTDKPFNYPFSDNLPDEVTDLANKILSLGDGKLTPAFGKAQFAAASAGLVATASWDLWGWSKNLLLYVKPTTLRVTANGYAVLTRRENVQRVLNEFVTFYQARVQAYQQQGRYPMNGPVEIRVTGLDDPSEAALSGGVAPALSAIRPRPDHPEWNVAVWLDILTLPGTPYANQFYREIEQWIEANFNGSYAAVRPEWSKGWGYTDQAAWADSAMLQTTIPNAFRAGQPAAANWDAAKAALAAYDPYRLFSSPLLDSLGL 540
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JS8)

(-) CATH Domains  (3, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: FAD-oxidase_C (26)
(-)
Clan: FAD_PCMH (53)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (B5MGF8_9NEIS | B5MGF8)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016614    oxidoreductase activity, acting on CH-OH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group act as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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(-) Related Entries Specified in the PDB File

1i19 CHOLESTEROL OXIDASE FROM BREVIBACTERIUM STEROLICUM