3JRS - JenaLib

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Title :   CRYSTAL STRUCTURE OF (+)-ABA-BOUND PYL1

Authors :   K. Miyazono, T. Miyakawa, Y. Sawano, K. Kubota, M. Tanokura

Date :   08 Sep 09 (Deposition) - 03 Nov 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Plant Hormone Receptor, Abscisic Acid, Pyl1, Hormone Receptor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   K. Miyazono, T. Miyakawa, Y. Sawano, K. Kubota, H. J. Kang, A. Asano, Y. Miyauchi, M. Takahashi, Y. Zhi, Y. Fujita, T. Yoshida, K. Kodaira, K. Yamaguchi-Shinozaki, M. Tanokura
Structural Basis Of Abscisic Acid Signalling
Nature V. 462 609 2009
PubMed-ID: 19855379 | Reference-DOI: 10.1038/NATURE08583

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN AT5G46790
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 8-211
	Organism Common	:	MOUSE-EAR CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702
	Synonym	:	PYL1

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 3)

No.	Name	Count	Type	Full Name
1	A8S	3	Ligand/Ion	(2Z,4E)-5-[(1S)-1-HYDROXY-2,6,6-TRIMETHYL-4-OXOCYCLOHEX-2-EN-1-YL]-3-METHYLPENTA-2,4-DIENOIC ACID

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	A8S	1	Ligand/Ion	(2Z,4E)-5-[(1S)-1-HYDROXY-2,6,6-TRIMETHYL-4-OXOCYCLOHEX-2-EN-1-YL]-3-METHYLPENTA-2,4-DIENOIC ACID

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	A8S	1	Ligand/Ion	(2Z,4E)-5-[(1S)-1-HYDROXY-2,6,6-TRIMETHYL-4-OXOCYCLOHEX-2-EN-1-YL]-3-METHYLPENTA-2,4-DIENOIC ACID

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	A8S	1	Ligand/Ion	(2Z,4E)-5-[(1S)-1-HYDROXY-2,6,6-TRIMETHYL-4-OXOCYCLOHEX-2-EN-1-YL]-3-METHYLPENTA-2,4-DIENOIC ACID

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:2 , LYS A:86 , PHE A:88 , VAL A:110 , ALA A:116 , PHE A:135 , PHE A:189 , HOH A:223 , HOH A:224 , HOH A:228 , HOH A:231	BINDING SITE FOR RESIDUE A8S A 1
2	AC2	SOFTWARE	LYS B:86 , VAL B:110 , ALA B:116 , SER B:119 , PHE B:135 , ILE B:137 , TYR B:147 , PHE B:189 , ASN B:197 , HOH B:217 , HOH B:224 , HOH B:229 , HOH B:235 , HOH B:242 , HOH B:243	BINDING SITE FOR RESIDUE A8S B 2
3	AC3	SOFTWARE	LYS C:86 , PRO C:115 , ALA C:116 , SER C:119 , PHE C:135 , ASN C:197 , HOH C:220 , HOH C:243 , HOH C:246 , HOH C:258	BINDING SITE FOR RESIDUE A8S C 3

(no "SS Bond" information available for 3JRS)

(no "Cis Peptide Bond" information available for 3JRS)

(no "SAP(SNP)/Variant" information available for 3JRS)

(no "PROSITE Motif" information available for 3JRS)

(no "Exon" information available for 3JRS)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:174
 aligned with PYL1_ARATH | Q8VZS8 from UniProtKB/Swiss-Prot  Length:221

    Alignment length:179
                                    40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200         
           PYL1_ARATH    31 DLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAMN 209
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh.......eeeeeeeeee..hhhhhhhhhh...hhhhh...eeeee...........eeeeee.......eeeeeeeeee....eeeeeeee........eeeeeeeee..-----..eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jrs A  31 DLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEK-----RIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAMN 209
                                    40        50        60        70        80        90       100       110       120       130       140       150       | -   |   170       180       190       200         
                                                                                                                                                         158   164

Chain B from PDB  Type:PROTEIN  Length:173
 aligned with PYL1_ARATH | Q8VZS8 from UniProtKB/Swiss-Prot  Length:221

    Alignment length:180
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209
           PYL1_ARATH    30 SDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAMN 209
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhh.......eeeeeeeeee..hhhhhhhhhh...hhhhh...eeeee...........eeeeee.......eeeeeeeeee....eeeeeeee........eeeeeeeee.-------.eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3jrs B  30 SDLTQDEFTQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFE-------IWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAMN 209
                                    39        49        59        69        79        89        99       109       119       129       139       149       | -     | 169       179       189       199       209
                                                                                                                                                         157     165

Chain C from PDB  Type:PROTEIN  Length:160
 aligned with PYL1_ARATH | Q8VZS8 from UniProtKB/Swiss-Prot  Length:221

    Alignment length:172
                                    47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207  
           PYL1_ARATH    38 TQLSQSIAEFHTYQLGNGRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSITGGEHRLRNYKSVTTVHRFEKEEEEERIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAMN 209
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) --------------   --Polyketide_cyc2-3jrsC01 C:57-206                                                                                                                      --- Pfam domains (1)
           Pfam domains (2) --------------   --Polyketide_cyc2-3jrsC02 C:57-206                                                                                                                      --- Pfam domains (2)
           Pfam domains (3) --------------   --Polyketide_cyc2-3jrsC03 C:57-206                                                                                                                      --- Pfam domains (3)
         Sec.struct. author ..hhhhhhhhh...---.eeeeeeeeee..hhhhhhhhhh...hhhhh...eeeee...........eeeeee.......eeeeeeeeee....eeeeee.---......eeeeeeeee.------..eeeeeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jrs C  38 TQLSQSIAEFHTYQ---GRCSSLLAQRIHAPPETVWSVVRRFDRPQIYKHFIKSCNVSEDFEMRVGCTRDVNVISGLPANTSRERLDLLDDDRRVTGFSIT---HRLRNYKSVTTVHRFE------RIWTVVLESYVVDVPEGNSEEDTRLFADTVIRLNLQKLASITEAMN 209
                                    47   |   |57        67        77        87        97       107       117       127       137|   |  147       157      |167       177       187       197       207  
                                        51  55                                                                                138 142            157    164

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3JRS)

(no "CATH Domain" information available for 3JRS)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Bet_V_1_like (93)

Family: Polyketide_cyc2 (26)

Arabidopsis thaliana (Mouse-ear cress) (24)

1a	Polyketide_cyc2-3jrsC01	C:57-206
1b	Polyketide_cyc2-3jrsC02	C:57-206
1c	Polyketide_cyc2-3jrsC03	C:57-206

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (PYL1_ARATH | Q8VZS8)

molecular function
	GO:0010427	abscisic acid binding	Interacting selectively and non-covalently with abscisic acid, plant hormones that regulate aspects of plant growth.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0004864	protein phosphatase inhibitor activity	Stops, prevents or reduces the activity of a protein phosphatase, an enzyme that hydrolyzes phosphate groups from phosphorylated proteins.
	GO:0004872	receptor activity	Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
biological process
	GO:0009738	abscisic acid-activated signaling pathway	A series of molecular signals generated by the binding of the plant hormone abscisic acid (ABA) to a receptor, and ending with modulation of a cellular process, e.g. transcription.
	GO:0043086	negative regulation of catalytic activity	Any process that stops or reduces the activity of an enzyme.
	GO:0080163	regulation of protein serine/threonine phosphatase activity	Any process that modulates the frequency, rate or extent of protein serine/threonine phosphatase activity: catalysis of the reaction: protein serine/threonine phosphate + H2O = protein serine/threonine + phosphate.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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	3jrs
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	PYL1_ARATH \| Q8VZS8	:	3jrq 3kay 3kdj 3nef 3neg 3nmn

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