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(-) Description

Title :  CRYSTAL STRUCTURE OF SUSD SUPERFAMILY PROTEIN (YP_001299712.1) FROM BACTEROIDES VULGATUS ATCC 8482 AT 1.13 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  04 Sep 09  (Deposition) - 22 Sep 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.13
Chains :  Asym./Biol. Unit :  A
Keywords :  Yp_001299712. 1, Susd Superfamily Protein, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Ragb, Susd And Hypothetical Proteins, Unknown Function, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Susd Superfamily Protein (Yp_001299712. 1) From Bacteroides Vulgatus Atcc 8482 At 1. 1 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SUSD SUPERFAMILY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BVU_2431, YP_001299712.1
    Organism Scientific: BACTEROIDES VULGATUS ATCC 8482
    Organism Taxid: 435590
    Strain: ATCC 8482 / DSM 1447 / NCTC 11154
    Synonym: PUTATIVE OUTER MEMBRANE PROTEIN, PROBABLY INVOLVED IN NUTRIENT BINDING

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 24)

Asymmetric/Biological Unit (5, 24)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
3MSE15Mod. Amino AcidSELENOMETHIONINE
4SO43Ligand/IonSULFATE ION
5TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:204 , ARG A:208 , ASP A:252 , LYS A:270 , HOH A:562 , HOH A:606 , HOH A:851 , HOH A:957 , HOH A:1333BINDING SITE FOR RESIDUE TRS A 1
2AC2SOFTWAREASN A:94 , LYS A:95 , ARG A:501 , HOH A:673 , HOH A:731 , HOH A:912 , HOH A:1220BINDING SITE FOR RESIDUE GOL A 2
3AC3SOFTWAREHIS A:51 , ALA A:52 , ARG A:55 , HIS A:209 , PHE A:210 , THR A:277 , ILE A:278 , HIS A:279 , HOH A:604 , HOH A:821 , HOH A:1117BINDING SITE FOR RESIDUE GOL A 3
4AC4SOFTWARESER A:364 , TYR A:365 , HOH A:713 , HOH A:800 , HOH A:810 , HOH A:1123 , HOH A:1173BINDING SITE FOR RESIDUE GOL A 4
5AC5SOFTWARETYR A:336 , TRP A:347 , HOH A:598 , HOH A:686 , HOH A:778 , HOH A:1023BINDING SITE FOR RESIDUE GOL A 5
6AC6SOFTWAREGLN A:230 , GLY A:487 , TRP A:488 , HOH A:720 , HOH A:837 , HOH A:845 , HOH A:949 , HOH A:1003 , HOH A:1070 , HOH A:1216BINDING SITE FOR RESIDUE SO4 A 6
7AC7SOFTWAREGLY A:381 , SER A:382 , THR A:383 , HOH A:718 , HOH A:724 , HOH A:735 , HOH A:741 , HOH A:746 , HOH A:754BINDING SITE FOR RESIDUE SO4 A 7
8AC8SOFTWAREARG A:341 , ASN A:342 , HOH A:529 , HOH A:809 , HOH A:868 , HOH A:1140BINDING SITE FOR RESIDUE SO4 A 8
9AC9SOFTWAREARG A:341 , ASN A:342 , HOH A:868BINDING SITE FOR RESIDUE CL A 9

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3JQ0)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Tyr A:439 -Pro A:440

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3JQ0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3JQ0)

(-) Exons   (0, 0)

(no "Exon" information available for 3JQ0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:478
 aligned with A6L326_BACV8 | A6L326 from UniProtKB/TrEMBL  Length:524

    Alignment length:488
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516        
         A6L326_BACV8    37 WKNPDQFTAFNTGLHALLREKSYNFFLLGEPRADIYGDNPIGGEASQGMERLPFNTINKENVGISNYGDMYKIINQINQMIAKTTETTILTEATQNYYLGEAYGMRAYLYFHLLRSWGDVVLYLDYTEGQNLDLSNITKGVSPATEVMEQIKKDIQASENAFGSDYSFKLGRHFWSAAATQMLKGEAYLWSGRQMNGGNSDYTIAKNAFENVKKADVGLVTSSFKDIFSFENKKNKEMIFTIHNGKDEYEMWGGYYRMRLIPAQDKMVKIYCDENGNSFVGTPDAQLNGLTQLQVRREFYFKGFRNNDTRWTTSLKAVYKKDAQGVVSYFGPITYKFQGTMLEGGSTRSFLDDFPIYRYADCLLQLAMAKVLLGEDPTEEINAVRERAYGSKYFNEHKAEIAYPNDNDPEFYTDNKWMKPDNAGALEAILKERLREFMFEGKRWYDIRLLGWDYVHQYSSAEQSRLLWPIDAGTLTNNSALKQTPGYE 524
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains SusD-like_3-3jq0A02 A:37-228                                                                                                                                                                    -------------------------------------------SusD-3jq0A01 A:272-523                                                                                                                                                                                                                                      - Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhh.....eee.........hhhhh............hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh..........----------....hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.........hhhhhhhhhhh....eeeee.......hhhhhhhhhhhh.hhhhhhhh...........hhhhhh......ee.hhhhhh......hhhhhheeeeeee.....eeeeeeee...................eeeeehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhh......hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh..hhhhh....hhhhhhhh.......... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3jq0 A  37 WKNPDQFTAFNTGLHALLREKSYNFFLLGEPRADIYGDNPIGGEASQGmERLPFNTINKENVGISNYGDmYKIINQINQmIAKTTETTILTEATQNYYLGEAYGmRAYLYFHLLRSWGDVVLYLDYTE----------KGVSPATEVmEQIKKDIQASENAFGSDYSFKLGRHFWSAAATQmLKGEAYLWSGRQmNGGNSDYTIAKNAFENVKKADVGLVTSSFKDIFSFENKKNKEmIFTIHNGKDEYEmWGGYYRmRLIPAQDKmVKIYCDENGNSFVGTPDAQLNGLTQLQVRREFYFKGFRNNDTRWTTSLKAVYKKDAQGVVSYFGPITYKFQGTmLEGGSTRSFLDDFPIYRYADCLLQLAmAKVLLGEDPTEEINAVRERAYGSKYFNEHKAEIAYPNDNDPEFYTDNKWmKPDNAGALEAILKERLREFmFEGKRWYDIRLLGWDYVHQYSSAEQSRLLWPIDAGTLTNNSALKQTPGYE 524
                                    46        56        66        76        86        96       106       116       126       136    |  146       156       | -       176       186       196       206       216 |     226    |  236       246       256       266       276       286|      296      |306       316       326       336       346       356       366       376|      386       396       406       416       426       436       446       456       466       476       486       496       506       516        
                                                                           85-MSE              106-MSE   116-MSE                  141-MSE                164        175      184-MSE                           218-MSE      231-MSE                                    274-MSE      287-MSE  |      303-MSE                                                                   377-MSE                    404-MSE                                           454-MSE             474-MSE                                              
                                                                                                                                                                                                                                                                                           294-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3JQ0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3JQ0)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: TPR (230)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3JQ0)

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    Tyr A:439 - Pro A:440   [ RasMol ]  
 

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