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(-) Description

Title :  IDENTIFICATION OF THE ACTIVE SITES IN THE METHYLTRANSFERASES OF A TRANSCRIBING DSRNA VIRUS
 
Authors :  B. Zhu, C. Yang, H. Liu, L. Cheng, F. Song, S. Zeng, X. Huang, G. Ji, P. Zhu
Date :  20 Mar 14  (Deposition) - 08 Oct 14  (Release) - 08 Oct 14  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.80
Chains :  Asym./Biol. Unit :  A,B,C,D,E
Keywords :  Dsrna Virus, Reoviridae, Rna Capping, Rna Methyltransferase, Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. Zhu, C. Yang, H. Liu, L. Cheng, F. Song, S. Zeng, X. Huang, G. Ji, P. Zhu
Identification Of The Active Sites In The Methyltransferase Of A Transcribing Dsrna Virus.
J. Mol. Biol. V. 426 2167 2014
PubMed-ID: 24690366  |  Reference-DOI: 10.1016/J.JMB.2014.03.013

(-) Compounds

Molecule 1 - STRUCTURAL PROTEIN VP3
    Chains: A, B, C, D, E
    Organism Common: BMCPV
    Organism Scientific: BOMBYX MORI CYPOVIRUS 1
    Organism Taxid: 110829

 Structural Features

(-) Chains, Units

  12345
Asymmetric/Biological Unit : ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 15)

Asymmetric/Biological Unit (2, 15)
No.NameCountTypeFull Name
1GPL5Mod. Amino AcidLYSINE GUANOSINE-5'-MONOPHOSPHATE
2SAH10Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWARESER A:528 , GLY A:562 , ALA A:563 , GLU A:564 , GLU A:566 , ASP A:589 , ARG A:590 , VAL A:600 , ILE A:617 , ASN A:618 , SER A:619BINDING SITE FOR RESIDUE SAH A 1101
02AC2SOFTWAREILE A:861 , PRO A:883 , PRO A:903 , PHE A:904 , VAL A:924 , TYR A:992 , ASN E:607BINDING SITE FOR RESIDUE SAH A 1102
03AC3SOFTWARESER B:528 , GLY B:562 , ALA B:563 , GLU B:564 , GLU B:566 , ASP B:589 , ARG B:590 , VAL B:600 , ILE B:617 , ASN B:618 , SER B:619BINDING SITE FOR RESIDUE SAH B 1101
04AC4SOFTWAREASN A:607 , ILE B:861 , PRO B:883 , PRO B:903 , PHE B:904 , VAL B:924 , TYR B:992BINDING SITE FOR RESIDUE SAH B 1102
05AC5SOFTWARESER C:528 , GLY C:562 , ALA C:563 , GLU C:564 , GLU C:566 , ASP C:589 , ARG C:590 , VAL C:600 , ILE C:617 , ASN C:618 , SER C:619BINDING SITE FOR RESIDUE SAH C 1101
06AC6SOFTWAREASN B:607 , ILE C:861 , PRO C:883 , PRO C:903 , PHE C:904 , VAL C:924 , TYR C:992BINDING SITE FOR RESIDUE SAH C 1102
07AC7SOFTWARESER D:528 , GLY D:562 , ALA D:563 , GLU D:564 , GLU D:566 , ASP D:589 , ARG D:590 , VAL D:600 , ILE D:617 , ASN D:618 , SER D:619BINDING SITE FOR RESIDUE SAH D 1101
08AC8SOFTWAREASN C:607 , ILE D:861 , PRO D:883 , PRO D:903 , PHE D:904 , VAL D:924 , TYR D:992BINDING SITE FOR RESIDUE SAH D 1102
09AC9SOFTWARESER E:528 , GLY E:562 , ALA E:563 , GLU E:564 , GLU E:566 , ASP E:589 , ARG E:590 , VAL E:600 , ILE E:617 , ASN E:618 , SER E:619BINDING SITE FOR RESIDUE SAH E 1101
10BC1SOFTWAREASN D:607 , ILE E:861 , PRO E:883 , PRO E:903 , PHE E:904 , VAL E:924 , TYR E:992BINDING SITE FOR RESIDUE SAH E 1102

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3J6Q)

(-) Cis Peptide Bonds  (90, 90)

Asymmetric/Biological Unit
No.Residues
1Gln A:45 -Arg A:46
2Arg A:46 -Arg A:47
3Gly A:55 -Pro A:56
4Tyr A:78 -Pro A:79
5Phe A:283 -Thr A:284
6Ser A:291 -Arg A:292
7His A:307 -Ala A:308
8Ile A:358 -Pro A:359
9Val A:406 -Glu A:407
10Ala A:512 -Pro A:513
11Gly A:562 -Ala A:563
12Glu A:564 -Arg A:565
13Glu A:593 -Pro A:594
14Val A:600 -Pro A:601
15Ser A:619 -Tyr A:620
16Glu A:621 -Asp A:622
17Val A:812 -Pro A:813
18Val A:872 -Pro A:873
19Gln B:45 -Arg B:46
20Arg B:46 -Arg B:47
21Gly B:55 -Pro B:56
22Tyr B:78 -Pro B:79
23Phe B:283 -Thr B:284
24Ser B:291 -Arg B:292
25His B:307 -Ala B:308
26Ile B:358 -Pro B:359
27Val B:406 -Glu B:407
28Ala B:512 -Pro B:513
29Gly B:562 -Ala B:563
30Glu B:564 -Arg B:565
31Glu B:593 -Pro B:594
32Val B:600 -Pro B:601
33Ser B:619 -Tyr B:620
34Glu B:621 -Asp B:622
35Val B:812 -Pro B:813
36Val B:872 -Pro B:873
37Gln C:45 -Arg C:46
38Arg C:46 -Arg C:47
39Gly C:55 -Pro C:56
40Tyr C:78 -Pro C:79
41Phe C:283 -Thr C:284
42Ser C:291 -Arg C:292
43His C:307 -Ala C:308
44Ile C:358 -Pro C:359
45Val C:406 -Glu C:407
46Ala C:512 -Pro C:513
47Gly C:562 -Ala C:563
48Glu C:564 -Arg C:565
49Glu C:593 -Pro C:594
50Val C:600 -Pro C:601
51Ser C:619 -Tyr C:620
52Glu C:621 -Asp C:622
53Val C:812 -Pro C:813
54Val C:872 -Pro C:873
55Gln D:45 -Arg D:46
56Arg D:46 -Arg D:47
57Gly D:55 -Pro D:56
58Tyr D:78 -Pro D:79
59Phe D:283 -Thr D:284
60Ser D:291 -Arg D:292
61His D:307 -Ala D:308
62Ile D:358 -Pro D:359
63Val D:406 -Glu D:407
64Ala D:512 -Pro D:513
65Gly D:562 -Ala D:563
66Glu D:564 -Arg D:565
67Glu D:593 -Pro D:594
68Val D:600 -Pro D:601
69Ser D:619 -Tyr D:620
70Glu D:621 -Asp D:622
71Val D:812 -Pro D:813
72Val D:872 -Pro D:873
73Gln E:45 -Arg E:46
74Arg E:46 -Arg E:47
75Gly E:55 -Pro E:56
76Tyr E:78 -Pro E:79
77Phe E:283 -Thr E:284
78Ser E:291 -Arg E:292
79His E:307 -Ala E:308
80Ile E:358 -Pro E:359
81Val E:406 -Glu E:407
82Ala E:512 -Pro E:513
83Gly E:562 -Ala E:563
84Glu E:564 -Arg E:565
85Glu E:593 -Pro E:594
86Val E:600 -Pro E:601
87Ser E:619 -Tyr E:620
88Glu E:621 -Asp E:622
89Val E:812 -Pro E:813
90Val E:872 -Pro E:873

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3J6Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3J6Q)

(-) Exons   (0, 0)

(no "Exon" information available for 3J6Q)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1058
 aligned with Q914N6_CPVBM | Q914N6 from UniProtKB/TrEMBL  Length:1058

    Alignment length:1058
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050        
        Q914N6_CPVBM      1 MWHYTSINNDTRVALDPKPNQIRTITKPNTVPQLGTDYLYTFNSQRRSHTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWNVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVIQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTIPTSMNYISNTGQGRIKHSLTVTGATEHDTVADIVLGQTGEDVITISMVEPMSIAVEDMYGYVLDTPTRDIWPADEQIEQKGDAVALYDTKTSRALGMFNNTVRIDDLLSPLLSLVYRTYIKGDTMTMTQGSLDHLTLCAAVDSDITFVGNRMIAPLPEGYIPKPMHRNNSTMKMLSLYVALKKLENFATNSYLMAPDTSIILLGAEREPAVNILRRFNRNVSNVRIIGMGDRAVEPNIRVRVPFPIDKNISADFIICDINSYEDQSFESMFSETISVVTTCASAATRALVKINHPSEYMINSVIERLSQLGGVFYHTALLKTASQNPYSYETYIYITPIAAAVRFPFYSNSAMINRYMTAVADDEMPIIPSIHTVIKGHSNTYSPGLFCGCVDVQSAPLALSQLKSYCSEATTWRVDSDDNLVNIIARIDPARIALEFRTRSNTSAYHEYQRYVPNGLGFKVRKTREFRYMHREVTFIHKLMMYALIREQISLTENMTQVVSIGGRNLADISVVPLNMKYVVIDPATRIETLTQEKKNIEVQSRPFQFDAANMDLENNSIYLFIAVIMNEPNGAATPARMQMDKIRNVATAMLTRTNCVAYISFYEAGIITRLDQSTAHKTIRVEEGRLKVANYVPVDTLVEADVTLMLRDIGITHEIIRPSTPELIDACSNYGIRLGSTGGAVLDVFNHYSPVIKLVRS 1058
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh......................eeeee....eeeee...........hhhhhh..hhhhhh......hhhhhhhhhhhhhhh.............eehhhhhhhhhhh...hhhhhhhhhhhhh.ee...hhhhhh........eeeee.............eeeeee...hhhhhhhhh........eee.........eeeee.hhhhhhhhhhhhhhhhhhhhhhhh..............ee....hhhhhhhhhhh.................hhhhhhhhhhhhh..hhhhhhhhhhhh....eeehhhhhhhhhhhhh..........eee...................eee........................eee.........hhhhh.eee.............hhhhhhhhhhhhh.....hhhhhh...hhhhhhhhhhhhhhhhh...........hhhhhhhh.......ee...ee..............hhhhhhhhhhhhhhhhhhh...........eeeeee........hhhhhh......eeeeeee.......ee..............eeee........hhhhhhhhhhhhhh.........eee....hhhhhhhhhhhhhh......eeeeeee..........eeeee.............hhhhhh..............................eeeeeee..hhhhhhhhhhhh..eeeeee......eeeeeee.hhhhhhhhh.......hhhhhh.............eee.......hhhhhhhhhhhhhhhhhh......eeee................eeeee......hhhhhh...eeee................eeeee..................hhhhhhhhhhhh......eeee....hhhhhh.........ee....ee..........hhhhhhhh........eee..hhhhhhhhhhhhh...hhhhhhhhhhhh....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j6q A    1 MWHYTSINNDTRVALDPKPNQIRTITKPNTVPQLGTDYLYTFNSQRRSHTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWNVLHTFHYRSESDMIDHFAAkILEDWRQKEKLDKGALVEADRVIQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTIPTSMNYISNTGQGRIKHSLTVTGATEHDTVADIVLGQTGEDVITISMVEPMSIAVEDMYGYVLDTPTRDIWPADEQIEQKGDAVALYDTKTSRALGMFNNTVRIDDLLSPLLSLVYRTYIKGDTMTMTQGSLDHLTLCAAVDSDITFVGNRMIAPLPEGYIPKPMHRNNSTMKMLSLYVALKKLENFATNSYLMAPDTSIILLGAEREPAVNILRRFNRNVSNVRIIGMGDRAVEPNIRVRVPFPIDKNISADFIICDINSYEDQSFESMFSETISVVTTCASAATRALVKINHPSEYMINSVIERLSQLGGVFYHTALLKTASQNPYSYETYIYITPIAAAVRFPFYSNSAMINRYMTAVADDEMPIIPSIHTVIKGHSNTYSPGLFCGCVDVQSAPLALSQLKSYCSEATTWRVDSDDNLVNIIARIDPARIALEFRTRSNTSAYHEYQRYVPNGLGFKVRKTREFRYMHREVTFIHKLMMYALIREQISLTENMTQVVSIGGRNLADISVVPLNMKYVVIDPATRIETLTQEKKNIEVQSRPFQFDAANMDLENNSIYLFIAVIMNEPNGAATPARMQMDKIRNVATAMLTRTNCVAYISFYEAGIITRLDQSTAHKTIRVEEGRLKVANYVPVDTLVEADVTLMLRDIGITHEIIRPSTPELIDACSNYGIRLGSTGGAVLDVFNHYSPVIKLVRS 1058
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230   |   240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050        
                                                                                                                                                                                                                                                                   234-GPL                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:1058
 aligned with Q914N6_CPVBM | Q914N6 from UniProtKB/TrEMBL  Length:1058

    Alignment length:1058
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050        
        Q914N6_CPVBM      1 MWHYTSINNDTRVALDPKPNQIRTITKPNTVPQLGTDYLYTFNSQRRSHTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWNVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVIQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTIPTSMNYISNTGQGRIKHSLTVTGATEHDTVADIVLGQTGEDVITISMVEPMSIAVEDMYGYVLDTPTRDIWPADEQIEQKGDAVALYDTKTSRALGMFNNTVRIDDLLSPLLSLVYRTYIKGDTMTMTQGSLDHLTLCAAVDSDITFVGNRMIAPLPEGYIPKPMHRNNSTMKMLSLYVALKKLENFATNSYLMAPDTSIILLGAEREPAVNILRRFNRNVSNVRIIGMGDRAVEPNIRVRVPFPIDKNISADFIICDINSYEDQSFESMFSETISVVTTCASAATRALVKINHPSEYMINSVIERLSQLGGVFYHTALLKTASQNPYSYETYIYITPIAAAVRFPFYSNSAMINRYMTAVADDEMPIIPSIHTVIKGHSNTYSPGLFCGCVDVQSAPLALSQLKSYCSEATTWRVDSDDNLVNIIARIDPARIALEFRTRSNTSAYHEYQRYVPNGLGFKVRKTREFRYMHREVTFIHKLMMYALIREQISLTENMTQVVSIGGRNLADISVVPLNMKYVVIDPATRIETLTQEKKNIEVQSRPFQFDAANMDLENNSIYLFIAVIMNEPNGAATPARMQMDKIRNVATAMLTRTNCVAYISFYEAGIITRLDQSTAHKTIRVEEGRLKVANYVPVDTLVEADVTLMLRDIGITHEIIRPSTPELIDACSNYGIRLGSTGGAVLDVFNHYSPVIKLVRS 1058
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh......................eeeee....eeeee...........hhhhhh..hhhhhh......hhhhhhhhhhhhhhh.............eehhhhhhhhhhh...hhhhhhhhhhhhh.ee...hhhhhh........eeeee.............eeeeee...hhhhhhhhh........eee.........eeeee.hhhhhhhhhhhhhhhhhhhhhhhh..............ee....hhhhhhhhhhh.................hhhhhhhhhhhhh..hhhhhhhhhhhh....eeehhhhhhhhhhhhh..........eee...................eee........................eee.........hhhhh.eee.............hhhhhhhhhhhhh.....hhhhhh...hhhhhhhhhhhhhhhhh...........hhhhhhhh.......ee...ee..............hhhhhhhhhhhhhhhhhhh...........eeeeee........hhhhhh......eeeeeee.......ee..............eeee........hhhhhhhhhhhhhh.........eee....hhhhhhhhhhhhhh......eeeeeee..........eeeee.............hhhhhh..............................eeeeeee..hhhhhhhhhhhh..eeeeee......eeeeeee.hhhhhhhhh.......hhhhhh.............eee.......hhhhhhhhhhhhhhhhhh......eeee................eeeee......hhhhhh...eeee................eeeee..................hhhhhhhhhhhh......eeee....hhhhhh.........ee....ee..........hhhhhhhh........eee..hhhhhhhhhhhhh...hhhhhhhhhhhh....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j6q B    1 MWHYTSINNDTRVALDPKPNQIRTITKPNTVPQLGTDYLYTFNSQRRSHTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWNVLHTFHYRSESDMIDHFAAkILEDWRQKEKLDKGALVEADRVIQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTIPTSMNYISNTGQGRIKHSLTVTGATEHDTVADIVLGQTGEDVITISMVEPMSIAVEDMYGYVLDTPTRDIWPADEQIEQKGDAVALYDTKTSRALGMFNNTVRIDDLLSPLLSLVYRTYIKGDTMTMTQGSLDHLTLCAAVDSDITFVGNRMIAPLPEGYIPKPMHRNNSTMKMLSLYVALKKLENFATNSYLMAPDTSIILLGAEREPAVNILRRFNRNVSNVRIIGMGDRAVEPNIRVRVPFPIDKNISADFIICDINSYEDQSFESMFSETISVVTTCASAATRALVKINHPSEYMINSVIERLSQLGGVFYHTALLKTASQNPYSYETYIYITPIAAAVRFPFYSNSAMINRYMTAVADDEMPIIPSIHTVIKGHSNTYSPGLFCGCVDVQSAPLALSQLKSYCSEATTWRVDSDDNLVNIIARIDPARIALEFRTRSNTSAYHEYQRYVPNGLGFKVRKTREFRYMHREVTFIHKLMMYALIREQISLTENMTQVVSIGGRNLADISVVPLNMKYVVIDPATRIETLTQEKKNIEVQSRPFQFDAANMDLENNSIYLFIAVIMNEPNGAATPARMQMDKIRNVATAMLTRTNCVAYISFYEAGIITRLDQSTAHKTIRVEEGRLKVANYVPVDTLVEADVTLMLRDIGITHEIIRPSTPELIDACSNYGIRLGSTGGAVLDVFNHYSPVIKLVRS 1058
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230   |   240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050        
                                                                                                                                                                                                                                                                   234-GPL                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:1058
 aligned with Q914N6_CPVBM | Q914N6 from UniProtKB/TrEMBL  Length:1058

    Alignment length:1058
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050        
        Q914N6_CPVBM      1 MWHYTSINNDTRVALDPKPNQIRTITKPNTVPQLGTDYLYTFNSQRRSHTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWNVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVIQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTIPTSMNYISNTGQGRIKHSLTVTGATEHDTVADIVLGQTGEDVITISMVEPMSIAVEDMYGYVLDTPTRDIWPADEQIEQKGDAVALYDTKTSRALGMFNNTVRIDDLLSPLLSLVYRTYIKGDTMTMTQGSLDHLTLCAAVDSDITFVGNRMIAPLPEGYIPKPMHRNNSTMKMLSLYVALKKLENFATNSYLMAPDTSIILLGAEREPAVNILRRFNRNVSNVRIIGMGDRAVEPNIRVRVPFPIDKNISADFIICDINSYEDQSFESMFSETISVVTTCASAATRALVKINHPSEYMINSVIERLSQLGGVFYHTALLKTASQNPYSYETYIYITPIAAAVRFPFYSNSAMINRYMTAVADDEMPIIPSIHTVIKGHSNTYSPGLFCGCVDVQSAPLALSQLKSYCSEATTWRVDSDDNLVNIIARIDPARIALEFRTRSNTSAYHEYQRYVPNGLGFKVRKTREFRYMHREVTFIHKLMMYALIREQISLTENMTQVVSIGGRNLADISVVPLNMKYVVIDPATRIETLTQEKKNIEVQSRPFQFDAANMDLENNSIYLFIAVIMNEPNGAATPARMQMDKIRNVATAMLTRTNCVAYISFYEAGIITRLDQSTAHKTIRVEEGRLKVANYVPVDTLVEADVTLMLRDIGITHEIIRPSTPELIDACSNYGIRLGSTGGAVLDVFNHYSPVIKLVRS 1058
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh......................eeeee....eeeee...........hhhhhh..hhhhhh......hhhhhhhhhhhhhhh.............eehhhhhhhhhhh...hhhhhhhhhhhhh.ee...hhhhhh........eeeee.............eeeeee...hhhhhhhhh........eee.........eeeee.hhhhhhhhhhhhhhhhhhhhhhhh..............ee....hhhhhhhhhhh.................hhhhhhhhhhhhh..hhhhhhhhhhhh....eeehhhhhhhhhhhhh..........eee...................eee........................eee.........hhhhh.eee.............hhhhhhhhhhhhh.....hhhhhh...hhhhhhhhhhhhhhhhh...........hhhhhhhh.......ee...ee..............hhhhhhhhhhhhhhhhhhh...........eeeeee........hhhhhh......eeeeeee.......ee..............eeee........hhhhhhhhhhhhhh.........eee....hhhhhhhhhhhhhh......eeeeeee..........eeeee.............hhhhhh..............................eeeeeee..hhhhhhhhhhhh..eeeeee......eeeeeee.hhhhhhhhh.......hhhhhh.............eee.......hhhhhhhhhhhhhhhhhh......eeee................eeeee......hhhhhh...eeee................eeeee..................hhhhhhhhhhhh......eeee....hhhhhh.........ee....ee..........hhhhhhhh........eee..hhhhhhhhhhhhh...hhhhhhhhhhhh....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j6q C    1 MWHYTSINNDTRVALDPKPNQIRTITKPNTVPQLGTDYLYTFNSQRRSHTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWNVLHTFHYRSESDMIDHFAAkILEDWRQKEKLDKGALVEADRVIQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTIPTSMNYISNTGQGRIKHSLTVTGATEHDTVADIVLGQTGEDVITISMVEPMSIAVEDMYGYVLDTPTRDIWPADEQIEQKGDAVALYDTKTSRALGMFNNTVRIDDLLSPLLSLVYRTYIKGDTMTMTQGSLDHLTLCAAVDSDITFVGNRMIAPLPEGYIPKPMHRNNSTMKMLSLYVALKKLENFATNSYLMAPDTSIILLGAEREPAVNILRRFNRNVSNVRIIGMGDRAVEPNIRVRVPFPIDKNISADFIICDINSYEDQSFESMFSETISVVTTCASAATRALVKINHPSEYMINSVIERLSQLGGVFYHTALLKTASQNPYSYETYIYITPIAAAVRFPFYSNSAMINRYMTAVADDEMPIIPSIHTVIKGHSNTYSPGLFCGCVDVQSAPLALSQLKSYCSEATTWRVDSDDNLVNIIARIDPARIALEFRTRSNTSAYHEYQRYVPNGLGFKVRKTREFRYMHREVTFIHKLMMYALIREQISLTENMTQVVSIGGRNLADISVVPLNMKYVVIDPATRIETLTQEKKNIEVQSRPFQFDAANMDLENNSIYLFIAVIMNEPNGAATPARMQMDKIRNVATAMLTRTNCVAYISFYEAGIITRLDQSTAHKTIRVEEGRLKVANYVPVDTLVEADVTLMLRDIGITHEIIRPSTPELIDACSNYGIRLGSTGGAVLDVFNHYSPVIKLVRS 1058
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230   |   240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050        
                                                                                                                                                                                                                                                                   234-GPL                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:1058
 aligned with Q914N6_CPVBM | Q914N6 from UniProtKB/TrEMBL  Length:1058

    Alignment length:1058
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050        
        Q914N6_CPVBM      1 MWHYTSINNDTRVALDPKPNQIRTITKPNTVPQLGTDYLYTFNSQRRSHTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWNVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVIQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTIPTSMNYISNTGQGRIKHSLTVTGATEHDTVADIVLGQTGEDVITISMVEPMSIAVEDMYGYVLDTPTRDIWPADEQIEQKGDAVALYDTKTSRALGMFNNTVRIDDLLSPLLSLVYRTYIKGDTMTMTQGSLDHLTLCAAVDSDITFVGNRMIAPLPEGYIPKPMHRNNSTMKMLSLYVALKKLENFATNSYLMAPDTSIILLGAEREPAVNILRRFNRNVSNVRIIGMGDRAVEPNIRVRVPFPIDKNISADFIICDINSYEDQSFESMFSETISVVTTCASAATRALVKINHPSEYMINSVIERLSQLGGVFYHTALLKTASQNPYSYETYIYITPIAAAVRFPFYSNSAMINRYMTAVADDEMPIIPSIHTVIKGHSNTYSPGLFCGCVDVQSAPLALSQLKSYCSEATTWRVDSDDNLVNIIARIDPARIALEFRTRSNTSAYHEYQRYVPNGLGFKVRKTREFRYMHREVTFIHKLMMYALIREQISLTENMTQVVSIGGRNLADISVVPLNMKYVVIDPATRIETLTQEKKNIEVQSRPFQFDAANMDLENNSIYLFIAVIMNEPNGAATPARMQMDKIRNVATAMLTRTNCVAYISFYEAGIITRLDQSTAHKTIRVEEGRLKVANYVPVDTLVEADVTLMLRDIGITHEIIRPSTPELIDACSNYGIRLGSTGGAVLDVFNHYSPVIKLVRS 1058
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh......................eeeee....eeeee...........hhhhhh..hhhhhh......hhhhhhhhhhhhhhh.............eehhhhhhhhhhh...hhhhhhhhhhhhh.ee...hhhhhh........eeeee.............eeeeee...hhhhhhhhh........eee.........eeeee.hhhhhhhhhhhhhhhhhhhhhhhh..............ee....hhhhhhhhhhh.................hhhhhhhhhhhhh..hhhhhhhhhhhh....eeehhhhhhhhhhhhh..........eee...................eee........................eee.........hhhhh.eee.............hhhhhhhhhhhhh.....hhhhhh...hhhhhhhhhhhhhhhhh...........hhhhhhhh.......ee...ee..............hhhhhhhhhhhhhhhhhhh...........eeeeee........hhhhhh......eeeeeee.......ee..............eeee........hhhhhhhhhhhhhh.........eee....hhhhhhhhhhhhhh......eeeeeee..........eeeee.............hhhhhh..............................eeeeeee..hhhhhhhhhhhh..eeeeee......eeeeeee.hhhhhhhhh.......hhhhhh.............eee.......hhhhhhhhhhhhhhhhhh......eeee................eeeee......hhhhhh...eeee................eeeee..................hhhhhhhhhhhh......eeee....hhhhhh.........ee....ee..........hhhhhhhh........eee..hhhhhhhhhhhhh...hhhhhhhhhhhh....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j6q D    1 MWHYTSINNDTRVALDPKPNQIRTITKPNTVPQLGTDYLYTFNSQRRSHTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWNVLHTFHYRSESDMIDHFAAkILEDWRQKEKLDKGALVEADRVIQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTIPTSMNYISNTGQGRIKHSLTVTGATEHDTVADIVLGQTGEDVITISMVEPMSIAVEDMYGYVLDTPTRDIWPADEQIEQKGDAVALYDTKTSRALGMFNNTVRIDDLLSPLLSLVYRTYIKGDTMTMTQGSLDHLTLCAAVDSDITFVGNRMIAPLPEGYIPKPMHRNNSTMKMLSLYVALKKLENFATNSYLMAPDTSIILLGAEREPAVNILRRFNRNVSNVRIIGMGDRAVEPNIRVRVPFPIDKNISADFIICDINSYEDQSFESMFSETISVVTTCASAATRALVKINHPSEYMINSVIERLSQLGGVFYHTALLKTASQNPYSYETYIYITPIAAAVRFPFYSNSAMINRYMTAVADDEMPIIPSIHTVIKGHSNTYSPGLFCGCVDVQSAPLALSQLKSYCSEATTWRVDSDDNLVNIIARIDPARIALEFRTRSNTSAYHEYQRYVPNGLGFKVRKTREFRYMHREVTFIHKLMMYALIREQISLTENMTQVVSIGGRNLADISVVPLNMKYVVIDPATRIETLTQEKKNIEVQSRPFQFDAANMDLENNSIYLFIAVIMNEPNGAATPARMQMDKIRNVATAMLTRTNCVAYISFYEAGIITRLDQSTAHKTIRVEEGRLKVANYVPVDTLVEADVTLMLRDIGITHEIIRPSTPELIDACSNYGIRLGSTGGAVLDVFNHYSPVIKLVRS 1058
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230   |   240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050        
                                                                                                                                                                                                                                                                   234-GPL                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    


Chain E from PDB  Type:PROTEIN  Length:1058
 aligned with Q914N6_CPVBM | Q914N6 from UniProtKB/TrEMBL  Length:1058

    Alignment length:1058
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050        
        Q914N6_CPVBM      1 MWHYTSINNDTRVALDPKPNQIRTITKPNTVPQLGTDYLYTFNSQRRSHTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWNVLHTFHYRSESDMIDHFAAKILEDWRQKEKLDKGALVEADRVIQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTIPTSMNYISNTGQGRIKHSLTVTGATEHDTVADIVLGQTGEDVITISMVEPMSIAVEDMYGYVLDTPTRDIWPADEQIEQKGDAVALYDTKTSRALGMFNNTVRIDDLLSPLLSLVYRTYIKGDTMTMTQGSLDHLTLCAAVDSDITFVGNRMIAPLPEGYIPKPMHRNNSTMKMLSLYVALKKLENFATNSYLMAPDTSIILLGAEREPAVNILRRFNRNVSNVRIIGMGDRAVEPNIRVRVPFPIDKNISADFIICDINSYEDQSFESMFSETISVVTTCASAATRALVKINHPSEYMINSVIERLSQLGGVFYHTALLKTASQNPYSYETYIYITPIAAAVRFPFYSNSAMINRYMTAVADDEMPIIPSIHTVIKGHSNTYSPGLFCGCVDVQSAPLALSQLKSYCSEATTWRVDSDDNLVNIIARIDPARIALEFRTRSNTSAYHEYQRYVPNGLGFKVRKTREFRYMHREVTFIHKLMMYALIREQISLTENMTQVVSIGGRNLADISVVPLNMKYVVIDPATRIETLTQEKKNIEVQSRPFQFDAANMDLENNSIYLFIAVIMNEPNGAATPARMQMDKIRNVATAMLTRTNCVAYISFYEAGIITRLDQSTAHKTIRVEEGRLKVANYVPVDTLVEADVTLMLRDIGITHEIIRPSTPELIDACSNYGIRLGSTGGAVLDVFNHYSPVIKLVRS 1058
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhh......................eeeee....eeeee...........hhhhhh..hhhhhh......hhhhhhhhhhhhhhh.............eehhhhhhhhhhh...hhhhhhhhhhhhh.ee...hhhhhh........eeeee.............eeeeee...hhhhhhhhh........eee.........eeeee.hhhhhhhhhhhhhhhhhhhhhhhh..............ee....hhhhhhhhhhh.................hhhhhhhhhhhhh..hhhhhhhhhhhh....eeehhhhhhhhhhhhh..........eee...................eee........................eee.........hhhhh.eee.............hhhhhhhhhhhhh.....hhhhhh...hhhhhhhhhhhhhhhhh...........hhhhhhhh.......ee...ee..............hhhhhhhhhhhhhhhhhhh...........eeeeee........hhhhhh......eeeeeee.......ee..............eeee........hhhhhhhhhhhhhh.........eee....hhhhhhhhhhhhhh......eeeeeee..........eeeee.............hhhhhh..............................eeeeeee..hhhhhhhhhhhh..eeeeee......eeeeeee.hhhhhhhhh.......hhhhhh.............eee.......hhhhhhhhhhhhhhhhhh......eeee................eeeee......hhhhhh...eeee................eeeee..................hhhhhhhhhhhh......eeee....hhhhhh.........ee....ee..........hhhhhhhh........eee..hhhhhhhhhhhhh...hhhhhhhhhhhh....eeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                3j6q E    1 MWHYTSINNDTRVALDPKPNQIRTITKPNTVPQLGTDYLYTFNSQRRSHTLRLLGPFQYFNFSETDRGHPLFRLPLKYPSKAIPADELIDNLHSWMRSVHLLHVRSEDNTLRYNWMLGVYARSTNYTTPVGQLVVNAPAILNYSNPQDAFNSVFVALGIDYIDIPITNSNIFDDSSTPYNVRIWHAPTMTEVNHILALMRKSTLVSTHSSWHWNVLHTFHYRSESDMIDHFAAkILEDWRQKEKLDKGALVEADRVIQRLIPLSSSTYVQRLAAIGALYPNEFTENVLDLSRLSTALLQLSDTYYQHANDQLRRLYRRMYNDSRTLYMTQRHQELLLAQITADPNILLYPYTYIFTTIPTSMNYISNTGQGRIKHSLTVTGATEHDTVADIVLGQTGEDVITISMVEPMSIAVEDMYGYVLDTPTRDIWPADEQIEQKGDAVALYDTKTSRALGMFNNTVRIDDLLSPLLSLVYRTYIKGDTMTMTQGSLDHLTLCAAVDSDITFVGNRMIAPLPEGYIPKPMHRNNSTMKMLSLYVALKKLENFATNSYLMAPDTSIILLGAEREPAVNILRRFNRNVSNVRIIGMGDRAVEPNIRVRVPFPIDKNISADFIICDINSYEDQSFESMFSETISVVTTCASAATRALVKINHPSEYMINSVIERLSQLGGVFYHTALLKTASQNPYSYETYIYITPIAAAVRFPFYSNSAMINRYMTAVADDEMPIIPSIHTVIKGHSNTYSPGLFCGCVDVQSAPLALSQLKSYCSEATTWRVDSDDNLVNIIARIDPARIALEFRTRSNTSAYHEYQRYVPNGLGFKVRKTREFRYMHREVTFIHKLMMYALIREQISLTENMTQVVSIGGRNLADISVVPLNMKYVVIDPATRIETLTQEKKNIEVQSRPFQFDAANMDLENNSIYLFIAVIMNEPNGAATPARMQMDKIRNVATAMLTRTNCVAYISFYEAGIITRLDQSTAHKTIRVEEGRLKVANYVPVDTLVEADVTLMLRDIGITHEIIRPSTPELIDACSNYGIRLGSTGGAVLDVFNHYSPVIKLVRS 1058
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230   |   240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050        
                                                                                                                                                                                                                                                                   234-GPL
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3J6Q)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3J6Q)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3J6Q)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3J6Q)

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Asymmetric/Biological Unit
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  Ligands, Modified Residues, Ions
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  Cis Peptide Bonds
    Ala A:512 - Pro A:513   [ RasMol ]  
    Ala B:512 - Pro B:513   [ RasMol ]  
    Ala C:512 - Pro C:513   [ RasMol ]  
    Ala D:512 - Pro D:513   [ RasMol ]  
    Ala E:512 - Pro E:513   [ RasMol ]  
    Arg A:46 - Arg A:47   [ RasMol ]  
    Arg B:46 - Arg B:47   [ RasMol ]  
    Arg C:46 - Arg C:47   [ RasMol ]  
    Arg D:46 - Arg D:47   [ RasMol ]  
    Arg E:46 - Arg E:47   [ RasMol ]  
    Gln A:45 - Arg A:46   [ RasMol ]  
    Gln B:45 - Arg B:46   [ RasMol ]  
    Gln C:45 - Arg C:46   [ RasMol ]  
    Gln D:45 - Arg D:46   [ RasMol ]  
    Gln E:45 - Arg E:46   [ RasMol ]  
    Glu A:564 - Arg A:565   [ RasMol ]  
    Glu A:593 - Pro A:594   [ RasMol ]  
    Glu A:621 - Asp A:622   [ RasMol ]  
    Glu B:564 - Arg B:565   [ RasMol ]  
    Glu B:593 - Pro B:594   [ RasMol ]  
    Glu B:621 - Asp B:622   [ RasMol ]  
    Glu C:564 - Arg C:565   [ RasMol ]  
    Glu C:593 - Pro C:594   [ RasMol ]  
    Glu C:621 - Asp C:622   [ RasMol ]  
    Glu D:564 - Arg D:565   [ RasMol ]  
    Glu D:593 - Pro D:594   [ RasMol ]  
    Glu D:621 - Asp D:622   [ RasMol ]  
    Glu E:564 - Arg E:565   [ RasMol ]  
    Glu E:593 - Pro E:594   [ RasMol ]  
    Glu E:621 - Asp E:622   [ RasMol ]  
    Gly A:55 - Pro A:56   [ RasMol ]  
    Gly A:562 - Ala A:563   [ RasMol ]  
    Gly B:55 - Pro B:56   [ RasMol ]  
    Gly B:562 - Ala B:563   [ RasMol ]  
    Gly C:55 - Pro C:56   [ RasMol ]  
    Gly C:562 - Ala C:563   [ RasMol ]  
    Gly D:55 - Pro D:56   [ RasMol ]  
    Gly D:562 - Ala D:563   [ RasMol ]  
    Gly E:55 - Pro E:56   [ RasMol ]  
    Gly E:562 - Ala E:563   [ RasMol ]  
    His A:307 - Ala A:308   [ RasMol ]  
    His B:307 - Ala B:308   [ RasMol ]  
    His C:307 - Ala C:308   [ RasMol ]  
    His D:307 - Ala D:308   [ RasMol ]  
    His E:307 - Ala E:308   [ RasMol ]  
    Ile A:358 - Pro A:359   [ RasMol ]  
    Ile B:358 - Pro B:359   [ RasMol ]  
    Ile C:358 - Pro C:359   [ RasMol ]  
    Ile D:358 - Pro D:359   [ RasMol ]  
    Ile E:358 - Pro E:359   [ RasMol ]  
    Phe A:283 - Thr A:284   [ RasMol ]  
    Phe B:283 - Thr B:284   [ RasMol ]  
    Phe C:283 - Thr C:284   [ RasMol ]  
    Phe D:283 - Thr D:284   [ RasMol ]  
    Phe E:283 - Thr E:284   [ RasMol ]  
    Ser A:291 - Arg A:292   [ RasMol ]  
    Ser A:619 - Tyr A:620   [ RasMol ]  
    Ser B:291 - Arg B:292   [ RasMol ]  
    Ser B:619 - Tyr B:620   [ RasMol ]  
    Ser C:291 - Arg C:292   [ RasMol ]  
    Ser C:619 - Tyr C:620   [ RasMol ]  
    Ser D:291 - Arg D:292   [ RasMol ]  
    Ser D:619 - Tyr D:620   [ RasMol ]  
    Ser E:291 - Arg E:292   [ RasMol ]  
    Ser E:619 - Tyr E:620   [ RasMol ]  
    Tyr A:78 - Pro A:79   [ RasMol ]  
    Tyr B:78 - Pro B:79   [ RasMol ]  
    Tyr C:78 - Pro C:79   [ RasMol ]  
    Tyr D:78 - Pro D:79   [ RasMol ]  
    Tyr E:78 - Pro E:79   [ RasMol ]  
    Val A:406 - Glu A:407   [ RasMol ]  
    Val A:600 - Pro A:601   [ RasMol ]  
    Val A:812 - Pro A:813   [ RasMol ]  
    Val A:872 - Pro A:873   [ RasMol ]  
    Val B:406 - Glu B:407   [ RasMol ]  
    Val B:600 - Pro B:601   [ RasMol ]  
    Val B:812 - Pro B:813   [ RasMol ]  
    Val B:872 - Pro B:873   [ RasMol ]  
    Val C:406 - Glu C:407   [ RasMol ]  
    Val C:600 - Pro C:601   [ RasMol ]  
    Val C:812 - Pro C:813   [ RasMol ]  
    Val C:872 - Pro C:873   [ RasMol ]  
    Val D:406 - Glu D:407   [ RasMol ]  
    Val D:600 - Pro D:601   [ RasMol ]  
    Val D:812 - Pro D:813   [ RasMol ]  
    Val D:872 - Pro D:873   [ RasMol ]  
    Val E:406 - Glu E:407   [ RasMol ]  
    Val E:600 - Pro E:601   [ RasMol ]  
    Val E:812 - Pro E:813   [ RasMol ]  
    Val E:872 - Pro E:873   [ RasMol ]  
 

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  3j6q
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  Q914N6_CPVBM | Q914N6
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  Q914N6_CPVBM | Q914N6
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q914N6_CPVBM | Q914N6: 3iz3 3izx 3j17 3jay 3jaz 3jb0 3jb1 3jb2 3jb3

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3J6Q)