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(-) Description

Title :  HELICAL MODEL OF TUBZ-BT FOUR-STRANDED FILAMENT
 
Authors :  E. A. Montabana, D. A. Agard
Date :  03 Oct 13  (Deposition) - 19 Feb 14  (Release) - 19 Mar 14  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  6.80
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (24x)
Keywords :  Ftsz-Like, Tubulin-Like, Gtpase, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. A. Montabana, D. A. Agard
Bacterial Tubulin Tubz-Bt Transitions Between A Two-Strande Intermediate And A Four-Stranded Filament Upon Gtp Hydrolysis.
Proc. Natl. Acad. Sci. Usa V. 111 3407 2014
PubMed-ID: 24550513  |  Reference-DOI: 10.1073/PNAS.1318339111

(-) Compounds

Molecule 1 - FTSZ/TUBULIN-RELATED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: MODIFIED PET151TOPOD
    Expression System Strain: BL21(DE3)STAR
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PBT156
    Mutation: YES
    Organism Scientific: BACILLUS THURINGIENSIS
    Organism Taxid: 1430
    Strain: SEROVAR ISRAELENSIS
    Synonym: TUBZ-BT

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (24x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1GDP24Ligand/IonGUANOSINE-5'-DIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:31 , GLN A:32 , LYS A:33 , LYS A:36 , ARG A:87 , GLY A:136 , ALA A:137 , GLY A:139 , GLY A:140 , VAL A:141 , TRP A:236 , LYS A:237BINDING SITE FOR RESIDUE GDP A 900

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3J4S)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3J4S)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3J4S)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3J4S)

(-) Exons   (0, 0)

(no "Exon" information available for 3J4S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:414
 aligned with Q8KNP3_BACTI | Q8KNP3 from UniProtKB/TrEMBL  Length:484

    Alignment length:414
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410    
         Q8KNP3_BACTI     1 MLLNSNELEHIHSTNHSVNDISIRWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRIHFDGLKGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLSEIDEFMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNVVSTLHEINIIPENYGSDNVTYDPSDLIKLLSIPGRFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLGEYKRLDEIAGKFGDPIWDNEYAVCYTIFAGMTMPKRYISLAREGKELAEKQEQLRAEAQRKQDEEK 414
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhh.........eeeeeehhhhhhhhhhhhh...........eeee...hhhhh.....hhh.ee...........hhhhhhhh......hhhhhhhhhhhhhhhhhh.........eeeeeee..hhhhhhhhhhhhhhhhh......eeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeehhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhh...eeeeeeeee...hhhhhhhhhhhhhhh.......hhhhh.eeeeeeeee..hhhhh.hhhhhhhhhhhhhhhhhhhhee.....ee....eeeeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3j4s A   1 MLLNSNELEHIHSTNHSVNDISIRWGVIGAGQKGNKEADLFAGYKFSNGTTCYPTLAVNFAESDMMHLQNIIKEDRIHFDGLKGAARTPSVVTDLFDPETNPNANGYLDKLAQELGRKFTNEEGEVIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDPDEINNALVLLSEIDEFMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEVANDNVVSTLHEINIIPENYGSDNVTYDPSDLIKLLSIPGRFLTIGKARIAKFDLHSLENSIKRSLDEGFFSAEHQFETATMYGGFVLRPSNADFFKDVNTENRIRNTLGEYKRLDEIAGKFGDPIWDNEYAVCYTIFAGMTMPKRYISLAREGKELAEKQEQLRAEAQRKQDEEK 414
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3J4S)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3J4S)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3J4S)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q8KNP3_BACTI | Q8KNP3)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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 Related Entries

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        Q8KNP3_BACTI | Q8KNP3: 2xka 2xkb 3j4t 3m89 3m8k

(-) Related Entries Specified in the PDB File

3j4s