Chain 1 from PDB Type:RNA Length:50
3j0l 1 1001 GAAUGAUUAGAGGUUCCGGGGUCGAAAUGACCUUGACCUAUUCUCAAACU 1050
1010 1020 1030 1040 1050
Chain 2 from PDB Type:RNA Length:112
3j0l 2 2194 GCCCAGUGCUCUGAAUGUCAAAGUGAAGAAAUUCAACCAAGCGCGGGUAAACGGCGGGAGUAACUAUGACUCUCUUAAGGUAGCCAAAUGCCUCGUCAUCUAAUUAGUGACG 2305
2203 2213 2223 2233 2243 2253 2263 2273 2283 2293 2303
Chain 3 from PDB Type:RNA Length:12
3j0l 3 2477 GCCAGUGAAAUA 2488
2486
Chain 4 from PDB Type:RNA Length:14
3j0l 4 2614 GGCUGGGGCGGCAC 2627
2623
Chain 5 from PDB Type:RNA Length:6
3j0l 5 2653 CCUAAG 2658
Chain 6 from PDB Type:RNA Length:19
3j0l 6 2689 AGAACAAAAGGGUAAAAGC 2707
2698
Chain 7 from PDB Type:RNA Length:50
3j0l 7 2824 GCUUGUGGCAGUCAAGCGUUCAUAGCGACAUUGCUUUUUGAUUCUUCGAU 2873
2833 2843 2853 2863 2873
Chain 8 from PDB Type:RNA Length:20
3j0l 8 2957 GACCGUCGUGAGACAGGUUA 2976
2966 2976
Chain B from PDB Type:PROTEIN Length:213
SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ....hhhhhh............................................................hhhhh...................hhhhhhhh......................hhhhhh............hhhhhh........................hhhhhhhhhhh.............................. Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3j0l B 4 ITSSQVREHVKELLKYSNETKKRNFLETVELQVGLKNYDPQRDKRFSGSLKLPNCPRPNMSICIFGDAFDVDRAKSCGVDAMSVDDLKKLNKNKKLIKKLSKKYNAFIASEVLIKQVPRLLGPQLSKAGKFPTPVSHNDDLYGKVTDVRSTIKFQLKKVLCLAVAVGNVEMEEDVLVNQILMSVNFFVSLLKKNWQNVGSLVVKSSMGPAFRL 216
13 23 33 43 53 63 73 83 93 103 113 123 133 143 153 163 173 183 193 203 213
Chain E from PDB Type:RNA Length:5
3j0l E 1589 UCCCU 1593
Chain F from PDB Type:PROTEIN Length:95
SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
CATH domains ----------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ........................ee.........hhhhhhhh.........................ee......................... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------- Transcript
3j0l F 2 VNVPKTRKTYCKGKTCRKHTQHKVTQYKAGKASLFAQGKRRYDRKQSGFGGQTKPVFHKKAKTTKKVVLRLECVKCKTRAQLTLKRCKHFELGGE 96
11 21 31 41 51 61 71 81 91
Chain G from PDB Type:RNA Length:13
3j0l G 1429 GCACGCGCGUUAC 1441
1438
Chain J from PDB Type:PROTEIN Length:208
SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ...............................................eeee....eeehhhhhhhhhhhhhhhhhhh................eeee..........eeeee.eee....ee.....hhhhhhhhhhhhhhhhhh.......ee..........hhhhhh......................hhhhhhhhhhhhhh.. Sec.struct. author
SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3j0l J 3 RRPARCYRYQKNKPYPKSRYNRAVPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFLSKKGSLENNIREFPEYFAAQA 221
12 22 32 42 52 62 72 82 92 113 123 133 143 153 163 173 183 193 203 213
101|
113
Chain K from PDB Type:PROTEIN Length:140
SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains -------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ................eeeeeee........eee......eeee.hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee...........hhhhhhhhhhhhh..eeeeeee.................... Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3j0l K 12 EVISYGPPNVGANENVFGVCHIMATWNDTFIHVTDLSGRETLVRVTGGMKVKADREESSPYAAMQAAIDVVNRCKELKINALHIKLRAKGGVETKQPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRREGGRRGRRL 151
21 31 41 51 61 71 81 91 101 111 121 131 141 151
Chain L from PDB Type:PROTEIN Length:141
SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author .........hhhhhhhhhhhhh..hhhhhhhhhhhhhhh.......eeeeeeeeeeee.......eeeeeeeee.....eeeee....hhhhh.....eeeeee...............eeeeee...hhhhhhh...... Sec.struct. author
SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
3j0l L 2 GVGKPRGIRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVRKCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEKR 142
11 21 31 41 51 61 71 81 91 101 111 121 131 141
Chain S from PDB Type:PROTEIN Length:125
SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author ......hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh........eee.......hhhhh..eeeee....eeeee.hhhhh..hhhhhh.......... Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
3j0l S 11 FTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKPTTHGK 135
20 30 40 50 60 70 80 90 100 110 120 130
Chain T from PDB Type:PROTEIN Length:192
SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
Sec.struct. author ...hhhhh.hhhhh.................................hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh...eeeeeeee..eeeeeeee.hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh Sec.struct. author
SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
3j0l T 9 TQPKLFGKWNYDEVKIQDPCFQNYIACTTTKSQVFVPHTAGRYQVKKFRKTQCPIVERLIGTLMFHGRNAGKKALCIKVVKNAFEIIHLVTGRNPLEVFVGAVQNAGPREDSTRIGTAGVVRKQAVDVAPMRRVNLAIYFIIKGCRESAFKSMRSIAETLADEIINAEKNNTQSSWAIRKKDEIEKVAKGNR 200
18 28 38 48 58 68 78 88 98 108 118 128 138 148 158 168 178 188 198
Chain V from PDB Type:RNA Length:75
3j0l V 1 GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACC 75
10 20 30 40 50 60 70
Chain W from PDB Type:RNA Length:76
3j0l W 1 GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACCA 76
10 20 30 40 50 60 70
Chain X from PDB Type:PROTEIN Length:68
SCOP domains -------------------------------------------------------------------- SCOP domains
CATH domains -------------------------------------------------------------------- CATH domains
Pfam domains -------------------------------------------------------------------- Pfam domains
Sec.struct. author .....hhhhhhh..............hhhhhhhhhhhhh....................hhhhhhhhh Sec.struct. author
SAPs(SNPs) -------------------------------------------------------------------- SAPs(SNPs)
PROSITE -------------------------------------------------------------------- PROSITE
Transcript -------------------------------------------------------------------- Transcript
3j0l X 7 TLAKAGKVRKQTPKVEKKDKPRKTPKGRSYKRILYNRRYAPHILATDPKKRKSPNWHAGKKEKMDAAA 74
16 26 36 46 56 66
Chain Y from PDB Type:RNA Length:75
3j0l Y 1 GCCCGGAUAGCUCAGUCGGUAGAGCAGGGGAUUGAAAAUCCCCGUGUCCUUGGUUCGAUUCCGAGUCCGGGCACC 75
10 20 30 40 50 60 70
Chain a from PDB Type:RNA Length:48
3j0l a 541 GGAGGGCAAGUCAUGGUGCCAGCAGCCGCGGUAAUUCCAGCUCCAAUA 588
550 560 570 580
Chain b from PDB Type:RNA Length:12
3j0l b 877 GAGGUGAAAUUC 888
886
Chain c from PDB Type:RNA Length:17
3j0l c 972 GACGAUCAGAUACCGUC 988
981
Chain d from PDB Type:RNA Length:7
3j0l d 1543 CGAGGAA 1549
Chain e from PDB Type:RNA Length:4
3j0l e 1132 ACCA 1135
Chain f from PDB Type:RNA Length:21
3j0l f 1236 GGUGGUGGUGCAUGGCCGUUC 1256
1245|||| 1255
1246|||
3247||
3248|
1249
Chain g from PDB Type:RNA Length:31
3j0l g 1142 GAACCUGCGGCUUAAUUUGACUCAACACGGG 1172
1151 1161 1171
Chain h from PDB Type:RNA Length:111
3j0l h 1606 CACCGCCCGUCGCUUGUAGUAACGAAUGGUCUGGUGAACCUUCUGGACUGCGACAGCAAUGUUGCGGAAAAAUAAGUAAACCCUACCAUUUGGAACAACAAGAAGUCGUAA 1716
1615 1625 1635 1645 1655 1665 1675 1685 1695 1705 1715
Chain v from PDB Type:RNA Length:3
3j0l v 16 UUC 18
Chain w from PDB Type:RNA Length:2
3j0l w 14 AA 15
Chain y from PDB Type:RNA Length:3
3j0l y 19 UUC 21
| Legend: |
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→ Mismatch |
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- |
→ Gap |
(green background, '-', border residues have a numbering label) |
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→ Modified Residue |
(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name) |
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x |
→ Chemical Group |
(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |
Description
