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(-) Description

Title :  STRUCTURE FROM THE MOBILE METAGENOME OF VIBRIO CHOLERAE. INTEGRON CASSETTE PROTEIN VCH_CASS14
 
Authors :  C. N. Deshpande, V. Sureshan, S. J. Harrop, Y. Boucher, H. W. Stokes, P. M B. C. Mabbutt
Date :  11 Aug 09  (Deposition) - 25 Aug 09  (Release) - 06 Feb 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,C  (1x)
Biol. Unit 2:  B,D  (1x)
Keywords :  Novel, Integron Protein, Vibrio Cholerae, Argentinean O139 Strain, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Sureshan, C. N. Deshpande, Y. Boucher, J. E. Koenig, H. W. Stokes, S. J. Harrop, P. M. G. Curmi, B. C. Mabbutt
Integron Gene Cassettes: A Repository Of Novel Protein Fold With Distinct Interaction Sites
Plos One V. 8 52934 2013
PubMed-ID: 23349695  |  Reference-DOI: 10.1371/JOURNAL.PONE.0052934

(-) Compounds

Molecule 1 - INTEGRON CASSETTE PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-15B
    Expression System Strain: BL21(DE3)PLYSS
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: VIBRIO CHOLERAE O139
    Organism Taxid: 45888
    Strain: ARG3 O139

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A C 
Biological Unit 2 (1x):  B D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:14 , ARG A:21 , ASN A:60 , PHE A:73 , HOH A:122BINDING SITE FOR RESIDUE ACT A 114
2AC2SOFTWARETYR B:14 , ARG B:21 , ASN B:60 , PHE B:73 , HOH B:222BINDING SITE FOR RESIDUE ACT B 114

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3IMO)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Asn D:88 -Ile D:89

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IMO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IMO)

(-) Exons   (0, 0)

(no "Exon" information available for 3IMO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:114
 aligned with C7U313_VIBCL | C7U313 from UniProtKB/TrEMBL  Length:113

    Alignment length:114
                             1                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109    
         C7U313_VIBCL     - -MALTVKDVNILSQYISGVMARADHHAGNVEEIALALAGAILWRKDDTNIKVMAHGADTKNVLWVTINGERYAFSYNHSSEKIEMRKGNIQGNTIHEFDNSTPLSKLVEIFKGL 113
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.....eeee......eeeeeee..eeeeeeee....eeeeee........eee....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 3imo A   0 HMALTVKDVNILSQYISGVMARADHHAGNVEEIALALAGAILWRKDDTNIKVMAHGADTKNVLWVTINGERYAFSYNHSSEKIEMRKGNIQGNTIHEFDNSTPLSKLVEIFKGL 113
                                     9        19        29        39        49        59        69        79        89        99       109    


Chain B from PDB  Type:PROTEIN  Length:105
 aligned with C7U313_VIBCL | C7U313 from UniProtKB/TrEMBL  Length:113

    Alignment length:114
                             1                                                                                                                
                             |       9        19        29        39        49        59        69        79        89        99       109    
         C7U313_VIBCL     - -MALTVKDVNILSQYISGVMARADHHAGNVEEIALALAGAILWRKDDTNIKVMAHGADTKNVLWVTINGERYAFSYNHSSEKIEMRKGNIQGNTIHEFDNSTPLSKLVEIFKGL 113
               SCOP domains ------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....eeeee-----..eeeeee..eeeeeeee....eeeeee.----.eeeee....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------ Transcript
                 3imo B   0 HMALTVKDVNILSQYISGVMARADHHAGNVEEIALALAGAILWRKDDTNIKVMA-----KNVLWVTINGERYAFSYNHSSEKIEMRKG----NTIHEFDNSTPLSKLVEIFKGL 113
                                     9        19        29        39        49   |    59        69        79       | -  |     99       109    
                                                                                53    59                          87   92                     


Chain C from PDB  Type:PROTEIN  Length:107
 aligned with C7U313_VIBCL | C7U313 from UniProtKB/TrEMBL  Length:113

    Alignment length:112
                                    11        21        31        41        51        61        71        81        91       101       111  
         C7U313_VIBCL     2 ALTVKDVNILSQYISGVMARADHHAGNVEEIALALAGAILWRKDDTNIKVMAHGADTKNVLWVTINGERYAFSYNHSSEKIEMRKGNIQGNTIHEFDNSTPLSKLVEIFKGL 113
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....eeee.-----..eeeeee..eeeeeeee....eeeeee........eee....hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3imo C   2 ALTVKDVNILSQYISGVMARADHHAGNVEEIALALAGAILWRKDDTNIKVMA-----KNVLWVTINGERYAFSYNHSSEKIEMRKGNIQGNTIHEFDNSTPLSKLVEIFKGL 113
                                    11        21        31        41        51 |     |61        71        81        91       101       111  
                                                                              53    59                                                      


Chain D from PDB  Type:PROTEIN  Length:112
 aligned with C7U313_VIBCL | C7U313 from UniProtKB/TrEMBL  Length:113

    Alignment length:112
                                    11        21        31        41        51        61        71        81        91       101       111  
         C7U313_VIBCL     2 ALTVKDVNILSQYISGVMARADHHAGNVEEIALALAGAILWRKDDTNIKVMAHGADTKNVLWVTINGERYAFSYNHSSEKIEMRKGNIQGNTIHEFDNSTPLSKLVEIFKGL 113
               SCOP domains ---------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....eeeee......eeeeeee..eeeeeeee....eeeeee.....eeeeee....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------- Transcript
                 3imo D   2 ALTVKDVNILSQYISGVMARADHHAGNVEEIALALAGAILWRKDDTNIKVMAHGADTKNVLWVTINGERYAFSYNHSSEKIEMRKGNIQGNTIHEFDNSTPLSKLVEIFKGL 113
                                    11        21        31        41        51        61        71        81        91       101       111
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3IMO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3IMO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IMO)

(-) Gene Ontology  (0, 0)

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