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Title :   2.01 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF A HIT FAMILY PROTEIN FROM BACILLUS ANTHRACIS STR. 'AMES ANCESTOR'

Authors :   A. S. Halavaty, Z. Wawrzak, T. Skarina, O. Onopriyenko, E. Gordon, L. Pa A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)

Date :   10 Aug 09 (Deposition) - 18 Aug 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.01

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Hit Family Protein, Structural Genomics, Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Unknown Function, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. S. Halavaty, Z. Wawrzak, T. Skarina, O. Onopriyenko, E. Gordon, L. Papazisi, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 01 Angstrom Resolution Crystal Structure Of A Hit Family Protein From Bacillus Anthracis Str. 'Ames Ancestor'
To Be Published
PubMed: search

Molecule 1 - HIT FAMILY PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21-CODONPLUS(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BAS0978, BA_1047, GBAA1047, GBAA_1047, YP_017672
	Organism Common	:	ANTHRAX BACTERIUM
	Organism Scientific	:	BACILLUS ANTHRACIS STR. 'AMES ANCESTOR'
	Organism Taxid	:	261594
	Strain	:	AMES ANCESTOR

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 13)

No.	Name	Count	Type	Full Name
1	MSE	4	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	5	Ligand/Ion	SULFATE ION
3	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 5)

No.	Name	Count	Type	Full Name
1	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	3	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 4)

No.	Name	Count	Type	Full Name
1	MSE	2	Mod. Amino Acid	SELENOMETHIONINE
2	SO4	2	Ligand/Ion	SULFATE ION
3	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:8 , CYS A:11 , HIS A:50 , HIS A:101	BINDING SITE FOR RESIDUE ZN A 201
2	AC2	SOFTWARE	ASN A:90 , GLY A:96 , GLN A:97 , THR A:98 , VAL A:99 , HIS A:103 , HIS A:105 , HOH A:271	BINDING SITE FOR RESIDUE SO4 A 145
3	AC3	SOFTWARE	HIS A:64 , ASN A:131 , HOH A:162	BINDING SITE FOR RESIDUE SO4 A 146
4	AC4	SOFTWARE	CYS B:8 , CYS B:11 , HIS B:50 , HIS B:101	BINDING SITE FOR RESIDUE ZN B 202
5	AC5	SOFTWARE	ASN B:90 , GLY B:96 , GLN B:97 , THR B:98 , VAL B:99 , HIS B:103 , HIS B:105 , HOH B:175 , HOH B:217 , HOH B:268	BINDING SITE FOR RESIDUE SO4 B 145
6	AC6	SOFTWARE	CYS C:8 , CYS C:11 , HIS C:50 , HIS C:101	BINDING SITE FOR RESIDUE ZN C 203
7	AC7	SOFTWARE	ASN C:90 , GLY C:96 , GLN C:97 , THR C:98 , VAL C:99 , HIS C:103 , HIS C:105 , HOH C:273	BINDING SITE FOR RESIDUE SO4 C 145
8	AC8	SOFTWARE	CYS D:8 , CYS D:11 , HIS D:50 , HIS D:101	BINDING SITE FOR RESIDUE ZN D 204
9	AC9	SOFTWARE	ASN D:90 , GLY D:96 , GLN D:97 , THR D:98 , VAL D:99 , HIS D:103 , HIS D:105 , HOH D:196	BINDING SITE FOR RESIDUE SO4 D 145

(no "SS Bond" information available for 3IMI)

(no "Cis Peptide Bond" information available for 3IMI)

(no "SAP(SNP)/Variant" information available for 3IMI)

(no "PROSITE Motif" information available for 3IMI)

(no "Exon" information available for 3IMI)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:143
 aligned with Q81U41_BACAN | Q81U41 from UniProtKB/TrEMBL  Length:144

    Alignment length:143
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141   
         Q81U41_BACAN     2 NHTADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVWKSHQNEYTMENLQNIASTIANSVK 144
               SCOP domains d3imia_ A: automated matches                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh......eeee...eeeee.........eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeehhhhh.......eeeeee......eeeee..hhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3imi A   2 NHTADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVWKSHQNEYTmENLQNIASTIANSVK 144
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141   
                                                                                                                                                         129-MSE

Chain B from PDB  Type:PROTEIN  Length:142
 aligned with Q81U41_BACAN | Q81U41 from UniProtKB/TrEMBL  Length:144

    Alignment length:142
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142  
         Q81U41_BACAN     3 HTADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVWKSHQNEYTMENLQNIASTIANSVK 144
               SCOP domains d3imib_ B: automated matches                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhh......eeee...eeeee.........eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeehhhhh.......eeeeee......eeeee..hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3imi B   3 HTADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVWKSHQNEYTmENLQNIASTIANSVK 144
                                    12        22        32        42        52        62        72        82        92       102       112       122      |132       142  
                                                                                                                                                        129-MSE

Chain C from PDB  Type:PROTEIN  Length:141
 aligned with Q81U41_BACAN | Q81U41 from UniProtKB/TrEMBL  Length:144

    Alignment length:141
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143 
         Q81U41_BACAN     4 TADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVWKSHQNEYTMENLQNIASTIANSVK 144
               SCOP domains d3imic_ C: automated matches                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhh......eeee...eeeee.........eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeehhhhh.......eeeeee......eeeee..hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3imi C   4 TADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVWKSHQNEYTmENLQNIASTIANSVK 144
                                    13        23        33        43        53        63        73        83        93       103       113       123     | 133       143 
                                                                                                                                                       129-MSE

Chain D from PDB  Type:PROTEIN  Length:143
 aligned with Q81U41_BACAN | Q81U41 from UniProtKB/TrEMBL  Length:144

    Alignment length:143
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141   
         Q81U41_BACAN     2 NHTADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVWKSHQNEYTMENLQNIASTIANSVK 144
               SCOP domains d3imid_ D: automated matches                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhh......eeee...eeeee.........eeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeehhhhh.......eeeeee......eeeee..hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3imi D   2 NHTADNCIFCKIIDGQILCSKVYEDEHVLAFLDISQVTKGHTLVIPKVHKQDIFALTPEIASHIFSVVPKIANAIKAEFNPVGFNLLNNNGEKAGQTVFHFHLHLIPRYGENDGFGAVWKSHQNEYTmENLQNIASTIANSVK 144
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141   
                                                                                                                                                         129-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

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Superfamilies( (-)

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Families(

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Protein Domains( (-)

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Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: HIT-like (73)

Superfamily: HIT-like (67)

Family: HIT (HINT, histidine triad) family of protein kinase-interacting proteins (38)

Protein domain: automated matches (8)

Bacillus anthracis [TaxId: 261594] (1)

1a	d3imia_	A:
1b	d3imib_	B:
1c	d3imic_	C:
1d	d3imid_	D:

(no "CATH Domain" information available for 3IMI)

(no "Pfam Domain" information available for 3IMI)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (Q81U41_BACAN | Q81U41)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0003674	molecular_function	Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.

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Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 13)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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