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(-) Description

Title :  CRYSTAL STRUCTURE OF HUMAN LEUCINE CARBOXYLMETHYLTRANSFERASE-1 IN COMPLEX WITH S-ADENOSYL HOMOCYSTEINE
 
Authors :  Y. Xing, P. D. Jeffry
Date :  22 Jul 09  (Deposition) - 11 Aug 10  (Release) - 11 Aug 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Biol. Unit 8:  H  (1x)
Keywords :  Lcmt-1, Methyltransferase, S-Adenosyl-L-Methionine, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Stanevich, L. Jiang, K. A. Satyshur, Y. Li, P. D. Jeffrey, Z. Li, M. F. Semmelhack, Y. Xing
Structural Insights Into Novel Functions Of A Pro-Survival Pp2A-Specific Methyltransferase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - LEUCINE CARBOXYL METHYLTRANSFERASE 1
    Chains: A, B, C, D, E, F, G, H
    EC Number: 2.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CGI-68, LCMT, LCMT-1, LCMT1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: PROTEIN-LEUCINE O-METHYLTRANSFERASE

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): A       
Biological Unit 2 (1x):  B      
Biological Unit 3 (1x):   C     
Biological Unit 4 (1x):    D    
Biological Unit 5 (1x):     E   
Biological Unit 6 (1x):      F  
Biological Unit 7 (1x):       G 
Biological Unit 8 (1x):        H

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric Unit (3, 20)
No.NameCountTypeFull Name
1GOL8Ligand/IonGLYCEROL
2MES4Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SAH8Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 1 (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 3 (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 4 (3, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 5 (3, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 6 (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 7 (2, 2)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MES-1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 8 (3, 3)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
2MES1Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREVAL A:26 , THR A:29 , CYS A:30 , LYS A:37 , ARG A:73 , GLY A:98 , ALA A:99 , GLY A:100 , ASP A:122 , PHE A:123 , ALA A:170 , ASP A:171 , LEU A:172 , ARG A:173 , GLU A:198 , CYS A:199 , VAL A:200 , HOH A:335 , HOH A:344 , HOH A:354 , HOH A:1482BINDING SITE FOR RESIDUE SAH A 601
02AC2SOFTWAREILE A:66 , ARG A:73 , TYR A:228 , LEU A:311 , TYR A:315 , HOH A:820 , HOH A:822BINDING SITE FOR RESIDUE GOL A 1912
03AC3SOFTWAREVAL B:26 , THR B:29 , CYS B:30 , LYS B:37 , ARG B:73 , GLY B:98 , ALA B:99 , GLY B:100 , ASP B:122 , PHE B:123 , ALA B:170 , ASP B:171 , LEU B:172 , ARG B:173 , GLU B:198 , CYS B:199 , VAL B:200 , HOH B:351 , HOH B:359BINDING SITE FOR RESIDUE SAH B 601
04AC4SOFTWARELYS A:265 , SER A:277 , ALA A:278 , TRP A:319 , THR A:333 , HOH A:1229 , LYS B:265 , SER B:277 , ALA B:278 , GLU B:283 , HOH B:455 , HOH B:807 , HOH B:1662BINDING SITE FOR RESIDUE MES B 1903
05AC5SOFTWAREILE B:66 , TYR B:70 , ARG B:73 , TYR B:228 , TYR B:315 , HOH B:826 , HOH B:827 , HOH B:885BINDING SITE FOR RESIDUE GOL B 1913
06AC6SOFTWAREVAL C:26 , THR C:29 , CYS C:30 , LYS C:37 , ARG C:73 , GLY C:98 , ALA C:99 , GLY C:100 , ASP C:122 , PHE C:123 , ILE C:126 , ALA C:170 , ASP C:171 , LEU C:172 , ARG C:173 , GLU C:198 , CYS C:199 , VAL C:200 , HOH C:336 , HOH C:347 , HOH C:350BINDING SITE FOR RESIDUE SAH C 601
07AC7SOFTWAREGLY C:69 , TYR C:70 , ARG C:73 , TYR C:228 , TYR C:315 , HOH C:812 , HOH C:813 , HOH C:1820BINDING SITE FOR RESIDUE GOL C 1914
08AC8SOFTWAREVAL D:26 , THR D:29 , CYS D:30 , LYS D:37 , ARG D:73 , GLY D:98 , ALA D:99 , GLY D:100 , ASP D:122 , PHE D:123 , ALA D:170 , ASP D:171 , LEU D:172 , ARG D:173 , GLU D:198 , CYS D:199 , VAL D:200 , HOH D:342 , HOH D:353 , HOH D:378 , HOH D:513 , HOH D:1697BINDING SITE FOR RESIDUE SAH D 601
09AC9SOFTWARELYS C:265 , SER C:277 , ALA C:278 , TRP C:319 , THR C:333 , LYS D:265 , SER D:277 , ALA D:278 , GLU D:283 , HOH D:565BINDING SITE FOR RESIDUE MES D 1902
10BC1SOFTWAREILE D:66 , GLY D:69 , TYR D:70 , ARG D:73 , TYR D:228 , TYR D:315 , HOH D:390 , HOH D:622 , HOH D:828 , HOH D:1580BINDING SITE FOR RESIDUE GOL D 1915
11BC2SOFTWAREVAL E:26 , THR E:29 , CYS E:30 , LYS E:37 , ARG E:73 , GLY E:98 , ALA E:99 , GLY E:100 , ASP E:122 , PHE E:123 , ALA E:170 , ASP E:171 , LEU E:172 , ARG E:173 , GLU E:198 , CYS E:199 , VAL E:200 , HOH E:340 , HOH E:347 , HOH E:358 , HOH E:382 , HOH E:685BINDING SITE FOR RESIDUE SAH E 601
12BC3SOFTWARELYS E:265 , SER E:277 , ALA E:278 , GLU E:283 , HOH E:366 , LYS F:265 , ALA F:276 , SER F:277 , ALA F:278 , TRP F:319 , THR F:333BINDING SITE FOR RESIDUE MES E 1901
13BC4SOFTWAREILE E:66 , GLY E:69 , TYR E:70 , ARG E:73 , TYR E:228 , TYR E:315 , HOH E:402 , HOH E:624 , HOH E:818BINDING SITE FOR RESIDUE GOL E 1916
14BC5SOFTWAREVAL F:26 , THR F:29 , CYS F:30 , LYS F:37 , ARG F:73 , GLY F:98 , ALA F:99 , GLY F:100 , ASP F:122 , PHE F:123 , ALA F:170 , ASP F:171 , LEU F:172 , ARG F:173 , GLU F:198 , CYS F:199 , VAL F:200 , HOH F:335 , HOH F:357 , HOH F:373 , HOH F:1064BINDING SITE FOR RESIDUE SAH F 601
15BC6SOFTWARETYR F:70 , ARG F:73 , TYR F:228 , TYR F:315 , HOH F:816BINDING SITE FOR RESIDUE GOL F 1917
16BC7SOFTWAREVAL G:26 , THR G:29 , CYS G:30 , LYS G:37 , ARG G:73 , GLY G:98 , ALA G:99 , GLY G:100 , ASP G:122 , PHE G:123 , ALA G:170 , ASP G:171 , LEU G:172 , ARG G:173 , GLU G:198 , CYS G:199 , VAL G:200 , HOH G:335 , HOH G:339 , HOH G:352BINDING SITE FOR RESIDUE SAH G 601
17BC8SOFTWAREILE G:66 , TYR G:70 , ARG G:73 , TYR G:228 , LEU G:311 , TYR G:315 , HOH G:376 , HOH G:823BINDING SITE FOR RESIDUE GOL G 1911
18BC9SOFTWAREVAL H:26 , THR H:29 , CYS H:30 , LYS H:37 , ARG H:73 , GLY H:98 , ALA H:99 , GLY H:100 , ASP H:122 , PHE H:123 , ALA H:170 , ASP H:171 , LEU H:172 , ARG H:173 , GLU H:198 , CYS H:199 , VAL H:200 , HOH H:339 , HOH H:356 , HOH H:434 , HOH H:1142BINDING SITE FOR RESIDUE SAH H 601
19CC1SOFTWARELEU G:261 , LYS G:265 , SER G:277 , ALA G:278 , GLU G:283 , HOH G:365 , LYS H:265 , SER H:277 , ALA H:278 , TRP H:319 , THR H:333 , HOH H:838BINDING SITE FOR RESIDUE MES H 1904
20CC2SOFTWAREGLY H:69 , TYR H:70 , ARG H:73 , TYR H:228 , TYR H:315 , HOH H:824 , HOH H:825BINDING SITE FOR RESIDUE GOL H 1918

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3IEI)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3IEI)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IEI)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IEI)

(-) Exons   (0, 0)

(no "Exon" information available for 3IEI)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:310
 aligned with LCMT1_HUMAN | Q9UIC8 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:310
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334
          LCMT1_HUMAN    25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
               SCOP domains d3ieia_ A: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh..........eee...eeeee....hhhhhhhhhhhh.......eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhh....eeeeeehhhhhhh.hhhhhhhhhhhh...hhhhhhhhhh.eeeeeeee.....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iei A  25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334


Chain B from PDB  Type:PROTEIN  Length:310
 aligned with LCMT1_HUMAN | Q9UIC8 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:310
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334
          LCMT1_HUMAN    25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
               SCOP domains d3ieib_ B: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhh...........eee...eeeee....hhhhhhhhhhhh.......eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eeeeeehhhhhhh.hhhhhhhhhhhh....hhhhhhhhh.eeeeeeee.....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iei B  25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334


Chain C from PDB  Type:PROTEIN  Length:310
 aligned with LCMT1_HUMAN | Q9UIC8 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:310
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334
          LCMT1_HUMAN    25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
               SCOP domains d3ieic_ C: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh......hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee...eeeee....hhhhhhhhhhhh.......eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eeeeeehhhhhhh.hhhhhhhhhh......hhhhhhhhh.eeeeeeee.....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iei C  25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334


Chain D from PDB  Type:PROTEIN  Length:310
 aligned with LCMT1_HUMAN | Q9UIC8 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:310
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334
          LCMT1_HUMAN    25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
               SCOP domains d3ieid_ D: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhh...........eee...eeeee....hhhhhhhhhhhh.......eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eeeeeehhhhhhh.hhhhhhhhhhh.....hhhhhhhhh.eeeeeeee.....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iei D  25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334


Chain E from PDB  Type:PROTEIN  Length:310
 aligned with LCMT1_HUMAN | Q9UIC8 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:310
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334
          LCMT1_HUMAN    25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
               SCOP domains d3ieie_ E: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh......ee..eee...eeeee....hhhhhhhhhhhh.......eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eeeeeehhhhhhh.hhhhhhhhhh......hhhhhhhhh.eeeeeeee.....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iei E  25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334


Chain F from PDB  Type:PROTEIN  Length:310
 aligned with LCMT1_HUMAN | Q9UIC8 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:310
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334
          LCMT1_HUMAN    25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
               SCOP domains d3ieif_ F: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeee.....hhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee...eeeee....hhhhhhhhhhhh.......eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eeeeeehhhhhhh.hhhhhhhhhh......hhhhhhhhh.eeeeeeee.....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iei F  25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334


Chain G from PDB  Type:PROTEIN  Length:310
 aligned with LCMT1_HUMAN | Q9UIC8 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:310
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334
          LCMT1_HUMAN    25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
               SCOP domains d3ieig_ G: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhh.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhhhhhhh............eee...eeeee....hhhhhhhhhhhh.......eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eeeeeehhhhhhh.hhhhhhhhhhhh...hhhhhhhhhh.eeeeeeee.....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iei G  25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334


Chain H from PDB  Type:PROTEIN  Length:310
 aligned with LCMT1_HUMAN | Q9UIC8 from UniProtKB/Swiss-Prot  Length:334

    Alignment length:310
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334
          LCMT1_HUMAN    25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLPSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
               SCOP domains d3ieih_ H: automated matches                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.....hhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhh.....eeeeeehhhhhhhhhhhhhhhhhhhhhhhhhh.....eee..eee...eeeee....hhhhhhhhhhhh.......eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeeeeee....hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh....eeeeeehhhhhhh.hhhhhhhhhh.....hhhhhhhhhh.eeeeeeee.....hhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iei H  25 GVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAGVETCKSLESQKERLLSNGWETASAVDMMELYNRLPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEITY 334
                                    34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3IEI)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IEI)

(-) Gene Ontology  (16, 16)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (LCMT1_HUMAN | Q9UIC8)
molecular function
    GO:0008757    S-adenosylmethionine-dependent methyltransferase activity    Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a substrate.
    GO:0008168    methyltransferase activity    Catalysis of the transfer of a methyl group to an acceptor molecule.
    GO:0003880    protein C-terminal carboxyl O-methyltransferase activity    Catalysis of the transfer of a methyl group to the oxygen atom of a carboxyl group at the C-terminal of a protein.
    GO:0018423    protein C-terminal leucine carboxyl O-methyltransferase activity    Catalysis of the reaction: S-adenosyl-L-methionine + protein L-leucine = S-adenosyl-L-homocysteine + protein L-leucine methyl ester. This modification occurs only at the oxygen atoms of the free alpha carboxyl group of a leucine residue at the C-terminus of the protein.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008276    protein methyltransferase activity    Catalysis of the transfer of a methyl group (CH3-) to a protein.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006481    C-terminal protein methylation    The methylation of the C-terminal amino acid of a protein.
    GO:0006464    cellular protein modification process    The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications) occurring at the level of an individual cell. Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).
    GO:0032259    methylation    The process in which a methyl group is covalently attached to a molecule.
    GO:0031333    negative regulation of protein complex assembly    Any process that stops, prevents, or reduces the frequency, rate or extent of protein complex assembly.
    GO:0006479    protein methylation    The addition of a methyl group to a protein amino acid. A methyl group is derived from methane by the removal of a hydrogen atom.
    GO:0042981    regulation of apoptotic process    Any process that modulates the occurrence or rate of cell death by apoptotic process.
    GO:0010906    regulation of glucose metabolic process    Any process that modulates the rate, frequency or extent of glucose metabolism. Glucose metabolic processes are the chemical reactions and pathways involving glucose, the aldohexose gluco-hexose.
    GO:0090266    regulation of mitotic cell cycle spindle assembly checkpoint    Any process that modulates the rate, frequency, or extent of the mitotic cell cycle spindle assembly checkpoint, a cell cycle checkpoint that delays the metaphase/anaphase transition of a mitotic nuclear division until the spindle is correctly assembled and chromosomes are attached to the spindle.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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  3iei
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        LCMT1_HUMAN | Q9UIC8: 3o7w 3p71

(-) Related Entries Specified in the PDB File

3if3 CRYSTAL STRUCTURE OF THE COMPLEX OF LCMT-1 AND PP2A