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Title :   CRYSTAL STRUCTURE OF A PUTATIVE 3-OXOACYL-(ACYL CARRIER PROTEIN) REDUCTASE FROM BACILLUS ANTHRACIS AT 1.87 A RESOLUTION

Authors :   J. Hou, M. Chruszcz, H. Zheng, M. Cymborowski, H. -B. Luo, T. Skarina, S. A. Savchenko, A. M. Edwards, W. Anderson, W. Minor, Center For Struc Genomics Of Infectious Diseases (Csgid)

Date :   17 Jul 09 (Deposition) - 28 Jul 09 (Release) - 26 Dec 12 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.87

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (2x)

Keywords :   Structural Genomics, Putative 3-Oxoacyl-(Acyl Carrier Protein) Reductase, Oxidoreductase, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Hou, K. Wojciechowska, H. Zheng, M. Chruszcz, D. R. Cooper, M. Cymborowski, T. Skarina, E. Gordon, H. Luo, A. Savchenko, W. Minor
Structure Of A Short-Chain Dehydrogenase/Reductase From Bacillus Anthracis.
Acta Crystallogr. , Sect. F V. 68 632 2012
PubMed-ID: 22684058 | Reference-DOI: 10.1107/S1744309112017939

Molecule 1 - PUTATIVE 3-OXOACYL-(ACYL CARRIER PROTEIN) REDUCTASE
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21-CODONPLUS(DE3)-RIPL
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	BAS1712, BA_1847, GBAA1847, GBAA_1847
	Organism Common	:	ANTHRAX BACTERIUM
	Organism Scientific	:	BACILLUS ANTHRACIS STR. 'AMES ANCESTOR'
	Organism Taxid	:	261594
	Strain	:	AMES ANCESTOR

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (2x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 24)

No.	Name	Count	Type	Full Name
1	CL	4	Ligand/Ion	CHLORIDE ION
2	MES	1	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	14	Mod. Amino Acid	SELENOMETHIONINE
4	NAP	2	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
5	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 40)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MES	2	Ligand/Ion	2-(N-MORPHOLINO)-ETHANESULFONIC ACID
3	MSE	28	Mod. Amino Acid	SELENOMETHIONINE
4	NAP	4	Ligand/Ion	NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
5	SO4	6	Ligand/Ion	SULFATE ION

Asymmetric Unit (10, 10)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	SER A:58	BINDING SITE FOR RESIDUE CL A 292
02	AC2	SOFTWARE	GLY A:15 , ARG A:18	BINDING SITE FOR RESIDUE CL A 293
03	AC3	SOFTWARE	GLY A:11 , SER A:13 , ARG A:14 , GLY A:15 , ILE A:16 , HIS A:34 , TYR A:35 , GLY A:36 , ASN A:37 , LEU A:63 , GLU A:64 , ASN A:95 , GLY A:97 , ILE A:98 , ILE A:143 , SER A:144 , SER A:145 , TYR A:158 , LYS A:162 , PRO A:188 , GLY A:189 , VAL A:191 , MSE A:195 , ASN A:196 , SO4 A:404 , HOH A:771 , HOH A:772 , HOH A:773 , HOH A:774 , HOH A:776 , HOH A:777 , HOH A:778 , HOH A:779 , HOH A:780 , HOH A:781 , HOH A:787	BINDING SITE FOR RESIDUE NAP A 300
04	AC4	SOFTWARE	ARG A:135 , ASP A:136	BINDING SITE FOR RESIDUE SO4 A 402
05	AC5	SOFTWARE	GLY A:11 , SER A:13 , ARG A:14 , TYR A:35 , GLY A:36 , ASN A:37 , NAP A:300 , HOH A:778	BINDING SITE FOR RESIDUE SO4 A 404
06	AC6	SOFTWARE	GLN B:50 , SER B:55 , ALA B:56	BINDING SITE FOR RESIDUE CL B 291
07	AC7	SOFTWARE	GLY B:15	BINDING SITE FOR RESIDUE CL B 294
08	AC8	SOFTWARE	GLY B:11 , SER B:13 , ARG B:14 , GLY B:15 , ILE B:16 , HIS B:34 , GLY B:36 , ASN B:37 , ARG B:38 , ALA B:61 , ASN B:62 , LEU B:63 , GLU B:64 , ASN B:95 , ALA B:96 , GLY B:97 , ILE B:98 , ILE B:143 , SER B:144 , TYR B:158 , LYS B:162 , PRO B:188 , GLY B:189 , VAL B:191 , THR B:193 , MSE B:195 , ASN B:196 , HOH B:550 , HOH B:645 , HOH B:701 , HOH B:718 , HOH B:762 , HOH B:766 , HOH B:767	BINDING SITE FOR RESIDUE NAP B 300
09	AC9	SOFTWARE	GLU A:43 , GLN A:50 , HOH A:618 , ARG B:38 , LYS B:39 , GLU B:40 , GLU B:41	BINDING SITE FOR RESIDUE MES B 401
10	BC1	SOFTWARE	ALA B:-2 , ASN B:-1 , ASN B:26	BINDING SITE FOR RESIDUE SO4 B 403

(no "SS Bond" information available for 3ICC)

(no "Cis Peptide Bond" information available for 3ICC)

(no "SAP(SNP)/Variant" information available for 3ICC)

(no "PROSITE Motif" information available for 3ICC)

(no "Exon" information available for 3ICC)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:255
 aligned with Q81S30_BACAN | Q81S30 from UniProtKB/TrEMBL  Length:252

    Alignment length:255
                               1                                                                                                                                                                                                                                                           
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247     
         Q81S30_BACAN     - ---MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGSCL 252
               SCOP domains d3icca_ A: automated matches                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3iccA00 A:-2-252 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeeee...hhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.............hhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3icc A  -2 ANSmLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRmVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAYSmTKGAINTmTFTLAKQLGARGITVNAILPGFVKTDmNAELLSDPmmKQYATTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGSCL 252
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157  |    167|      177       187       197      |207       217       227       237       247     
                               |                                                                                                               115-MSE                                      160-MSE 168-MSE                    195-MSE  204-MSE                                            
                               1-MSE                                                                                                                                                                                                     205-MSE

Chain B from PDB  Type:PROTEIN  Length:255
 aligned with Q81S30_BACAN | Q81S30 from UniProtKB/TrEMBL  Length:252

    Alignment length:255
                               1                                                                                                                                                                                                                                                           
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247     
         Q81S30_BACAN     - ---MLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRMVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAYSMTKGAINTMTFTLAKQLGARGITVNAILPGFVKTDMNAELLSDPMMKQYATTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGSCL 252
               SCOP domains d3iccb_ B: automated matches                                                                                                                                                                                                                                    SCOP domains
               CATH domains 3iccB00 B:-2-252 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee....hhhhhhhhhhhhhh..eeeeee..hhhhhhhhhhhhhhh..eeeeee....hhhhhhhhhhhhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.......hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3icc B  -2 ANSmLKGKVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGANLESLHGVEALYSSLDNELQNRTGSTKFDILINNAGIGPGAFIEETTEQFFDRmVSVNAKAPFFIIQQALSRLRDNSRIINISSAATRISLPDFIAYSmTKGAINTmTFTLAKQLGARGITVNAILPGFVKTDmNAELLSDPmmKQYATTISAFNRLGEVEDIADTAAFLASPDSRWVTGQLIDVSGGSCL 252
                               |     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157  |    167|      177       187       197      |207       217       227       237       247     
                               1-MSE                                                                                                           115-MSE                                      160-MSE 168-MSE                    195-MSE  204-MSE                                            
                                                                                                                                                                                                                                         205-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: automated matches (447)

Protein domain: automated matches (447)

Bacillus anthracis [TaxId: 261594] (4)

1a	d3icca_	A:
1b	d3iccb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

'ames ancestor' (Bacillus anthracis str) (1)

1a	3iccA00	A:-2-252
1b	3iccB00	B:-2-252

(no "Pfam Domain" information available for 3ICC)

Asymmetric Unit(hide GO term definitions)

Chain A,B (Q81S30_BACAN | Q81S30)

molecular function
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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Description

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Ligands, Modified Residues, Ions (5, 24)

Sites (10, 10)

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