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(-) Description

Title :  2.2 ANGSTROM CRYSTAL STRUCTURE OF GLUCURONATE ISOMERASE FROM SALMONELLA TYPHIMURIUM.
 
Authors :  G. Minasov, Z. Wawrzak, T. Skarina, O. Onopriyenko, S. N. Peterson, A. S W. F. Anderson, Center For Structural Genomics Of Infectious (Csgid)
Date :  13 Jul 09  (Deposition) - 21 Jul 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.22
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Glucuronate Isomerase, Idp02065, Isomerase, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Minasov, Z. Wawrzak, T. Skarina, O. Onopriyenko, S. N. Peterson, A. Savchenko, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
2. 2 Angstrom Crystal Structure Of Glucuronate Isomerase Fro Salmonella Typhimurium.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUCURONATE ISOMERASE
    Chains: A, B, C
    EC Number: 5.3.1.12
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21-DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: STM3137, UXAC
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 90371
    Strain: LT2
    Synonym: URONATE ISOMERASE, URONIC ISOMERASE

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 48)

Asymmetric/Biological Unit (2, 48)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2MSE45Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:57 , ASP A:58 , HIS A:59 , TYR A:60 , LYS A:61BINDING SITE FOR RESIDUE CL A 471
2AC2SOFTWAREGLY B:57 , ASP B:58 , TYR B:60 , LYS B:61BINDING SITE FOR RESIDUE CL B 471
3AC3SOFTWAREASP C:58 , HIS C:59 , TYR C:60 , LYS C:61BINDING SITE FOR RESIDUE CL C 471

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3IAC)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:57 -Asp A:58
2Arg A:111 -Pro A:112
3Arg B:111 -Pro B:112
4Arg C:111 -Pro C:112

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3IAC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3IAC)

(-) Exons   (0, 0)

(no "Exon" information available for 3IAC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:469
 aligned with UXAC_SALTY | Q8ZM23 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:469
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461         
           UXAC_SALTY     2 ATFMTEDFLLKNDIARTLYHKYAAPMPIYDFHCHLSPQEIADDRRFDNLGQIWLEGDHYKWRALRSAGVDESLITGKETSDYEKYMAWANTVPKTLGNPLYHWTHLELRRPFGITGTLFGPDTAESIWTQCNEKLATPAFSARGIMQQMNVRMVGTTDDPIDSLEYHRQIAADDSIDIEVAPSWRPDKVFKIELDGFVDYLRKLEAAADVSITRFDDLRQALTRRLDHFAACGCRASDHGIETLRFAPVPDDAQLDAILGKRLAGETLSELEIAQFTTAVLVWLGRQYAARGWVMQLHIGAIRNNNTRMFRLLGPDTGFDSIGDNNISWALSRLLDSMDVTNELPKTILYCLNPRDNEVLATMIGNFQGPGIAGKVQFGSGWWFNDQKDGMLRQLEQLSQMGLLSQFVGMLTDSRSFLSYTRHEYFRRILCNLLGQWAQDGEIPDDEAMLSRMVQDICFNNAQRYFTIK 470
               SCOP domains d3iaca_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhh.....eee.....hhhhhhhh....hhhhhhhh..hhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee........hhhhhhhhhh.....eee....hhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...eeeeee.........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.ee...hhhhhhhhh......ee....hhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhh........eee...hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iac A   2 ATFmTEDFLLKNDIARTLYHKYAAPmPIYDFHCHLSPQEIADDRRFDNLGQIWLEGDHYKWRALRSAGVDESLITGKETSDYEKYmAWANTVPKTLGNPLYHWTHLELRRPFGITGTLFGPDTAESIWTQCNEKLATPAFSARGImQQmNVRmVGTTDDPIDSLEYHRQIAADDSIDIEVAPSWRPDKVFKIELDGFVDYLRKLEAAADVSITRFDDLRQALTRRLDHFAACGCRASDHGIETLRFAPVPDDAQLDAILGKRLAGETLSELEIAQFTTAVLVWLGRQYAARGWVmQLHIGAIRNNNTRmFRLLGPDTGFDSIGDNNISWALSRLLDSmDVTNELPKTILYCLNPRDNEVLATmIGNFQGPGIAGKVQFGSGWWFNDQKDGmLRQLEQLSQmGLLSQFVGmLTDSRSFLSYTRHEYFRRILCNLLGQWAQDGEIPDDEAmLSRmVQDICFNNAQRYFTIK 470
                               |    11        21     |  31        41        51        61        71        81     |  91       101       111       121       131       141     | 151  |    161       171       181       191       201       211       221       231       241       251       261       271       281       291    |  301       311       321       331       341       351       361  |    371       381       391|      401|      411       421       431       441       451  |    461         
                               |                    27-MSE                                                      87-MSE                                                     147-MSE  |                                                                                                                                           296-MSE       310-MSE                      339-MSE                  364-MSE                     392-MSE   402-MSE  411-MSE                                450-MSE                
                               5-MSE                                                                                                                                          150-MSE                                                                                                                                                                                                                                                                                                         454-MSE            
                                                                                                                                                                                  154-MSE                                                                                                                                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:469
 aligned with UXAC_SALTY | Q8ZM23 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:469
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461         
           UXAC_SALTY     2 ATFMTEDFLLKNDIARTLYHKYAAPMPIYDFHCHLSPQEIADDRRFDNLGQIWLEGDHYKWRALRSAGVDESLITGKETSDYEKYMAWANTVPKTLGNPLYHWTHLELRRPFGITGTLFGPDTAESIWTQCNEKLATPAFSARGIMQQMNVRMVGTTDDPIDSLEYHRQIAADDSIDIEVAPSWRPDKVFKIELDGFVDYLRKLEAAADVSITRFDDLRQALTRRLDHFAACGCRASDHGIETLRFAPVPDDAQLDAILGKRLAGETLSELEIAQFTTAVLVWLGRQYAARGWVMQLHIGAIRNNNTRMFRLLGPDTGFDSIGDNNISWALSRLLDSMDVTNELPKTILYCLNPRDNEVLATMIGNFQGPGIAGKVQFGSGWWFNDQKDGMLRQLEQLSQMGLLSQFVGMLTDSRSFLSYTRHEYFRRILCNLLGQWAQDGEIPDDEAMLSRMVQDICFNNAQRYFTIK 470
               SCOP domains d3iacb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhh.....eee.....hhhhhhh.....hhhhhhh...hhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee........hhhhhhhhhh.....eee....hhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...eeeeee.........hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.ee...hhhhhhhhh......ee....hhhhhhhhhhhhhh......eeeee.hhhhhhhhhhhhhhh........eee...hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3iac B   2 ATFmTEDFLLKNDIARTLYHKYAAPmPIYDFHCHLSPQEIADDRRFDNLGQIWLEGDHYKWRALRSAGVDESLITGKETSDYEKYmAWANTVPKTLGNPLYHWTHLELRRPFGITGTLFGPDTAESIWTQCNEKLATPAFSARGImQQmNVRmVGTTDDPIDSLEYHRQIAADDSIDIEVAPSWRPDKVFKIELDGFVDYLRKLEAAADVSITRFDDLRQALTRRLDHFAACGCRASDHGIETLRFAPVPDDAQLDAILGKRLAGETLSELEIAQFTTAVLVWLGRQYAARGWVmQLHIGAIRNNNTRmFRLLGPDTGFDSIGDNNISWALSRLLDSmDVTNELPKTILYCLNPRDNEVLATmIGNFQGPGIAGKVQFGSGWWFNDQKDGmLRQLEQLSQmGLLSQFVGmLTDSRSFLSYTRHEYFRRILCNLLGQWAQDGEIPDDEAmLSRmVQDICFNNAQRYFTIK 470
                               |    11        21     |  31        41        51        61        71        81     |  91       101       111       121       131       141     | 151  |    161       171       181       191       201       211       221       231       241       251       261       271       281       291    |  301       311       321       331       341       351       361  |    371       381       391|      401|      411       421       431       441       451  |    461         
                               5-MSE                27-MSE                                                      87-MSE                                                     147-MSE  |                                                                                                                                           296-MSE       310-MSE                      339-MSE                  364-MSE                     392-MSE   402-MSE  411-MSE                                450-MSE                
                                                                                                                                                                              150-MSE                                                                                                                                                                                                                                                                                                         454-MSE            
                                                                                                                                                                                  154-MSE                                                                                                                                                                                                                                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:468
 aligned with UXAC_SALTY | Q8ZM23 from UniProtKB/Swiss-Prot  Length:470

    Alignment length:468
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462        
           UXAC_SALTY     3 TFMTEDFLLKNDIARTLYHKYAAPMPIYDFHCHLSPQEIADDRRFDNLGQIWLEGDHYKWRALRSAGVDESLITGKETSDYEKYMAWANTVPKTLGNPLYHWTHLELRRPFGITGTLFGPDTAESIWTQCNEKLATPAFSARGIMQQMNVRMVGTTDDPIDSLEYHRQIAADDSIDIEVAPSWRPDKVFKIELDGFVDYLRKLEAAADVSITRFDDLRQALTRRLDHFAACGCRASDHGIETLRFAPVPDDAQLDAILGKRLAGETLSELEIAQFTTAVLVWLGRQYAARGWVMQLHIGAIRNNNTRMFRLLGPDTGFDSIGDNNISWALSRLLDSMDVTNELPKTILYCLNPRDNEVLATMIGNFQGPGIAGKVQFGSGWWFNDQKDGMLRQLEQLSQMGLLSQFVGMLTDSRSFLSYTRHEYFRRILCNLLGQWAQDGEIPDDEAMLSRMVQDICFNNAQRYFTIK 470
               SCOP domains d3iacc_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..........hhhhhhhhhhh.....eee.....hhhhhhh.....hhhhhhhh..hhhhhhhhhh..hhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee........hhhhhhhhhh.....eee....hhhhhh....hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...eeeeee.........hhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.ee...hhhhhhhhh......ee....hhhhhhhhhhhhhh.....eeeeee.hhhhhhhhhhhhhhh........eee...hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3iac C   3 TFmTEDFLLKNDIARTLYHKYAAPmPIYDFHCHLSPQEIADDRRFDNLGQIWLEGDHYKWRALRSAGVDESLITGKETSDYEKYmAWANTVPKTLGNPLYHWTHLELRRPFGITGTLFGPDTAESIWTQCNEKLATPAFSARGImQQmNVRmVGTTDDPIDSLEYHRQIAADDSIDIEVAPSWRPDKVFKIELDGFVDYLRKLEAAADVSITRFDDLRQALTRRLDHFAACGCRASDHGIETLRFAPVPDDAQLDAILGKRLAGETLSELEIAQFTTAVLVWLGRQYAARGWVmQLHIGAIRNNNTRmFRLLGPDTGFDSIGDNNISWALSRLLDSmDVTNELPKTILYCLNPRDNEVLATmIGNFQGPGIAGKVQFGSGWWFNDQKDGmLRQLEQLSQmGLLSQFVGmLTDSRSFLSYTRHEYFRRILCNLLGQWAQDGEIPDDEAmLSRmVQDICFNNAQRYFTIK 470
                              |     12        22    |   32        42        52        62        72        82    |   92       102       112       122       132       142    |  152 |     162       172       182       192       202       212       222       232       242       252       262       272       282       292   |   302       312       322       332      |342       352       362 |     372       382       392       402       412       422       432       442       452 |     462        
                              5-MSE                27-MSE                                                      87-MSE                                                     147-MSE  |                                                                                                                                           296-MSE       310-MSE                      339-MSE                  364-MSE                     392-MSE   402-MSE  411-MSE                                450-MSE                
                                                                                                                                                                             150-MSE                                                                                                                                                                                                                                                                                                         454-MSE            
                                                                                                                                                                                 154-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3IAC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3IAC)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (UXAC_SALTY | Q8ZM23)
molecular function
    GO:0008880    glucuronate isomerase activity    Catalysis of the reaction: D-glucuronate = D-fructuronate.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
biological process
    GO:0006064    glucuronate catabolic process    The chemical reactions and pathways resulting in the breakdown of glucuronate, any salt or ester of glucuronic acid.

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