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Title :   STRUCTURE FROM THE MOBILE METAGENOME OF V.CHOLERAE. INTEGRON CASSETTE PROTEIN VCH_CASS6

Authors :   C. N. Deshpande, V. Sureshan, S. J. Harrop, Y. Boucher, X. Xu, H. Cui, A. Edwards, A. Savchenko, A. Joachimiak, C. Chang, H. W. Stokes, P. M. G. Curmi, B. C. Mabbutt, Midwest Center For Structural Genomics (Mcsg)

Date :   13 Jul 09 (Deposition) - 11 Aug 09 (Release) - 11 Aug 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: A,B  (1x)
Biol. Unit 3: C,D  (1x)

Keywords :   Integron Cassette Protein, Vibrio Cholerae, Oyster Pond, Woods Hole, Acetyltransferase, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. N. Deshpande, V. Sureshan, S. J. Harrop, Y. Boucher, P. M. G Curmi, H. W. Stokes, A. Edwards, A. Savchenko, B. C. Mabbutt
Structure From The Mobile Metagenome Of V. Cholerae. Integron Cassette Protein Vch_cass6
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - INTEGRON CASSETTE PROTEIN
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	P15TV-L
	Expression System Vector Type	:	PLASMID
	Gene	:	A59_A0465
	Organism Scientific	:	VIBRIO CHOLERAE
	Organism Taxid	:	666
	Strain	:	OPVCH_OP3G

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:	A	B
Biological Unit 3 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 30)

No.	Name	Count	Type	Full Name
1	CL	4	Ligand/Ion	CHLORIDE ION
2	MSE	18	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	8	Ligand/Ion	SULFATE ION

Biological Unit 1 (2, 26)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	18	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	8	Ligand/Ion	SULFATE ION

Biological Unit 2 (2, 12)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	9	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	3	Ligand/Ion	SULFATE ION

Biological Unit 3 (2, 14)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	MSE	9	Mod. Amino Acid	SELENOMETHIONINE
3	SO4	5	Ligand/Ion	SULFATE ION

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ARG A:7 , ASP A:9 , LYS A:10 , HOH A:200	BINDING SITE FOR RESIDUE SO4 A 163
02	AC2	SOFTWARE	LYS A:63 , VAL A:64 , HOH A:166 , HOH A:197	BINDING SITE FOR RESIDUE SO4 A 164
03	AC3	SOFTWARE	GLU A:124 , ASN A:127	BINDING SITE FOR RESIDUE CL A 165
04	AC4	SOFTWARE	ASN B:40 , TYR B:41 , HIS B:44 , GLN B:45 , HOH B:196	BINDING SITE FOR RESIDUE SO4 B 163
05	AC5	SOFTWARE	ASP B:9 , LYS B:10 , HIS B:11 , HIS D:11	BINDING SITE FOR RESIDUE CL B 164
06	AC6	SOFTWARE	GLY C:18 , LYS C:63 , VAL C:64 , HOH C:186 , HOH C:205 , HOH C:220 , HOH C:238	BINDING SITE FOR RESIDUE SO4 C 163
07	AC7	SOFTWARE	PRO C:77 , ARG C:118 , LYS C:145 , LYS D:86	BINDING SITE FOR RESIDUE SO4 C 164
08	AC8	SOFTWARE	ARG C:95 , GLY C:96 , HOH C:214	BINDING SITE FOR RESIDUE SO4 C 165
09	AC9	SOFTWARE	GLU C:124 , ASN C:127	BINDING SITE FOR RESIDUE CL C 166
10	BC1	SOFTWARE	ARG D:7 , ASP D:9 , LYS D:10 , HOH D:246	BINDING SITE FOR RESIDUE SO4 D 163
11	BC2	SOFTWARE	GLY D:18 , LYS D:63 , VAL D:64 , HOH D:205 , HOH D:233	BINDING SITE FOR RESIDUE SO4 D 164
12	BC3	SOFTWARE	GLU D:124 , ASN D:127	BINDING SITE FOR RESIDUE CL D 165

(no "SS Bond" information available for 3I9S)

Asymmetric Unit

No.	Residues
1	Phe A:74	-	Pro A:75
2	Phe B:74	-	Pro B:75
3	Phe C:74	-	Pro C:75
4	Phe D:74	-	Pro D:75

(no "SAP(SNP)/Variant" information available for 3I9S)

(no "PROSITE Motif" information available for 3I9S)

(no "Exon" information available for 3I9S)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains d3i9sa_ A: automated matches                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh........eeeeeee..eeeeeeeeeee..hhhhheeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh.eeeeeeeee..hhhhhhhhhhh..ee...eeeeeeehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i9s A   2 SVEIKRVDKHHCLDLVGIFIELERYYFGDKAASEQDLANYLSHQVFSEHSGVKVIAAVEHDKVLGFATYTImFPAPKLSGQmYmKDLFVSSSARGKGIGLQLmKHLATIAITHNCQRLDWTAESTNPTAGKFYKSIGASLIREKEYYRFEGNGLNKLAKSL 162
                                    11        21        31        41        51        61        71 |      81 | |    91       101  |    111       121       131       141       151       161 
                                                                                                  73-MSE    83-MSE              104-MSE                                                      
                                                                                                              85-MSE

Chain B from PDB  Type:PROTEIN  Length:162
                                                                                                                                                                                                  
               SCOP domains d3i9sb_ B: automated matches                                                                                                                                       SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeehhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh........eeeeeee..eeeeeeeeeee.......eeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh.eeeeeeeee..hhhhhhhhhhh..ee...eeeeeeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3i9s B   0 GmSVEIKRVDKHHCLDLVGIFIELERYYFGDKAASEQDLANYLSHQVFSEHSGVKVIAAVEHDKVLGFATYTImFPAPKLSGQmYmKDLFVSSSARGKGIGLQLmKHLATIAITHNCQRLDWTAESTNPTAGKFYKSIGASLIREKEYYRFEGNGLNKLAKS 161
                             |       9        19        29        39        49        59        69   |    79   | |  89        99    |  109       119       129       139       149       159  
                             1-MSE                                                                  73-MSE    83-MSE              104-MSE                                                     
                                                                                                                85-MSE

Chain C from PDB  Type:PROTEIN  Length:161
                                                                                                                                                                                                 
               SCOP domains d3i9sc_ C: automated matches                                                                                                                                      SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeehhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh........eeeeeee..eeeeeeeeeee.......eeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh.eeeeeeeee..hhhhhhhhhhh..ee...eeeeeeehhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i9s C   1 mSVEIKRVDKHHCLDLVGIFIELERYYFGDKAASEQDLANYLSHQVFSEHSGVKVIAAVEHDKVLGFATYTImFPAPKLSGQmYmKDLFVSSSARGKGIGLQLmKHLATIAITHNCQRLDWTAESTNPTAGKFYKSIGASLIREKEYYRFEGNGLNKLAKS 161
                            |       10        20        30        40        50        60        70  |     80  | |   90       100   |   110       120       130       140       150       160 
                            1-MSE                                                                  73-MSE    83-MSE              104-MSE                                                     
                                                                                                               85-MSE

Chain D from PDB  Type:PROTEIN  Length:160
                                                                                                                                                                                                
               SCOP domains d3i9sd_ D: automated matches                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh........eeeeeee..eeeeeeeeeee.......eeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhh.eeeeeeeee..hhhhhhhhhhh..ee...eeeeeeehhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i9s D   3 VEIKRVDKHHCLDLVGIFIELERYYFGDKAASEQDLANYLSHQVFSEHSGVKVIAAVEHDKVLGFATYTImFPAPKLSGQmYmKDLFVSSSARGKGIGLQLmKHLATIAITHNCQRLDWTAESTNPTAGKFYKSIGASLIREKEYYRFEGNGLNKLAKSL 162
                                    12        22        32        42        52        62        72|       82| |     92       102 |     112       122       132       142       152       162
                                                                                                 73-MSE    83-MSE              104-MSE                                                      
                                                                                                             85-MSE

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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Class: Alpha and beta proteins (a+b) (23004)

Fold: Acyl-CoA N-acyltransferases (Nat) (250)

Superfamily: Acyl-CoA N-acyltransferases (Nat) (250)

Family: automated matches (63)

Protein domain: automated matches (63)

Vibrio cholerae [TaxId: 666] (7)

1a	d3i9sa_	A:
1b	d3i9sb_	B:
1c	d3i9sc_	C:
1d	d3i9sd_	D:

(no "CATH Domain" information available for 3I9S)

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Asymmetric Unit
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		Phe C:74 - Pro C:75	[ RasMol ]
		Phe D:74 - Pro D:75	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (3, 30)

Sites (12, 12)

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Cis Peptide Bonds (4, 4)

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