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(-) Description

Title :  HYPOTHETICAL PROTEIN FROM GIARDIA LAMBLIA GL50803_14299
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  30 Jun 09  (Deposition) - 01 Sep 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Hypothetical, Structural Genomics, Niaid, Decode, Infectious Disease, Seattle Structural Genomics Center For Infectious Disease, Ssgcid, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. L. Arakaki, J. Abendroth, B. L. Staker
Hypothetical Protein From Giardia Lamblia Gl50803_14299
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: AVA0421
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: GL50803_14299
    Organism Scientific: GIARDIA LAMBLIA
    Organism Taxid: 184922
    Strain: ATCC 50803

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1BUA1Ligand/IonBUTANOIC ACID
2LEA2Ligand/IonLEVULINIC ACID

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:118 , CYS A:119 , CYS A:120 , HOH A:203 , PHE B:26 , VAL B:29 , GLN B:126BINDING SITE FOR RESIDUE LEA A 142
2AC2SOFTWAREARG B:118 , CYS B:119 , CYS B:120 , HOH B:175 , VAL C:29 , GLY C:43 , GLN C:126BINDING SITE FOR RESIDUE BUA B 142
3AC3SOFTWAREPHE A:26 , VAL A:29 , GLY A:43 , GLN A:126 , ARG C:118 , CYS C:119 , CYS C:120 , HOH C:184BINDING SITE FOR RESIDUE LEA C 142

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1C:110 -C:110

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3I3F)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3I3F)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3I3F)

(-) Exons   (0, 0)

(no "Exon" information available for 3I3F)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:131
 aligned with A8BD71_GIAIC | A8BD71 from UniProtKB/TrEMBL  Length:141

    Alignment length:131
                                    20        30        40        50        60        70        80        90       100       110       120       130       140 
         A8BD71_GIAIC    11 GMPTPTFLVCPDVVKFENVGQIAVVNGMVYLGGSVGIDKSGTLHKGLEEQTRQTFDNIRKCLEYANSGLDYIVSLNIFLSTSLSDSEEARFNELYREVFCVPATRPCRCCVRAQLQEGLLVEVVNVVAAQK 141
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eee.............eeee..eeee.............hhhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeeee...hhhhhhhhhhhhhhhh.hhhhh.eeeeeee.......eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i3f A  11 GMPTPTFLVCPDVVKFENVGQIAVVNGMVYLGGSVGIDKSGTLHKGLEEQTRQTFDNIRKCLEYANSGLDYIVSLNIFLSTSLSDSEEARFNELYREVFCVPATRPCRCCVRAQLQEGLLVEVVNVVAAQK 141
                                    20        30        40        50        60        70        80        90       100       110       120       130       140 


Chain B from PDB  Type:PROTEIN  Length:128
 aligned with A8BD71_GIAIC | A8BD71 from UniProtKB/TrEMBL  Length:141

    Alignment length:128
                                    23        33        43        53        63        73        83        93       103       113       123       133        
         A8BD71_GIAIC    14 TPTFLVCPDVVKFENVGQIAVVNGMVYLGGSVGIDKSGTLHKGLEEQTRQTFDNIRKCLEYANSGLDYIVSLNIFLSTSLSDSEEARFNELYREVFCVPATRPCRCCVRAQLQEGLLVEVVNVVAAQK 141
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.............eeee..eeee..............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeeee...hhhhhhhhhhhhhhhh.hhhhh.eeeeeee.......eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i3f B  14 TPTFLVCPDVVKFENVGQIAVVNGMVYLGGSVGIDKSGTLHKGLEEQTRQTFDNIRKCLEYANSGLDYIVSLNIFLSTSLSDSEEARFNELYREVFCVPATRPCRCCVRAQLQEGLLVEVVNVVAAQK 141
                                    23        33        43        53        63        73        83        93       103       113       123       133        


Chain C from PDB  Type:PROTEIN  Length:128
 aligned with A8BD71_GIAIC | A8BD71 from UniProtKB/TrEMBL  Length:141

    Alignment length:128
                                    23        33        43        53        63        73        83        93       103       113       123       133        
         A8BD71_GIAIC    14 TPTFLVCPDVVKFENVGQIAVVNGMVYLGGSVGIDKSGTLHKGLEEQTRQTFDNIRKCLEYANSGLDYIVSLNIFLSTSLSDSEEARFNELYREVFCVPATRPCRCCVRAQLQEGLLVEVVNVVAAQK 141
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee.............eeee..eeee..............hhhhhhhhhhhhhhhhhhhh..hhh.eeeeeeeee...hhhhhhhhhhhhhhhh.hhhhh.eeeeeee.......eeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3i3f C  14 TPTFLVCPDVVKFENVGQIAVVNGMVYLGGSVGIDKSGTLHKGLEEQTRQTFDNIRKCLEYANSGLDYIVSLNIFLSTSLSDSEEARFNELYREVFCVPATRPCRCCVRAQLQEGLLVEVVNVVAAQK 141
                                    23        33        43        53        63        73        83        93       103       113       123       133
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3I3F)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3I3F)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3I3F)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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