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(-) Description

Title :  CRYSTAL STRUCTURE OF TRANSCRIPTION REGULATOR LIKE PROTEIN FROM STAPHYLOCOCCUS HAEMOLYTICUS
 
Authors :  R. Agarwal, S. K. Burley, S. Swaminathan, New York Sgx Research Cen Structural Genomics (Nysgxrc)
Date :  15 Jun 09  (Deposition) - 07 Jul 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Psi-Ii, Nysgxrc, 11235M, Transcription Regulator, Lac I, Structural Genomics, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Agarwal, S. K. Burley, S. Swaminathan
Crystal Structure Of Transcription Regulator Like Protein From Staphylococcus Haemolyticus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - TRANSCRIPTION REGULATOR LIKE PROTEIN
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PSGX3(BC)
    Expression System Strain: BL21(DE3)RIPL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: SH1407
    Organism Scientific: STAPHYLOCOCCUS HAEMOLYTICUS
    Organism Taxid: 279808
    Strain: JCSC1435
    Synonym: SIMILAR TO MALTOSE OPERON TRANSCRIPTIONAL REPRESSOR

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3HUU)

(-) Sites  (0, 0)

(no "Site" information available for 3HUU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HUU)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Ile A:226 -Pro A:227
2Thr A:245 -Pro A:246
3Ile B:226 -Pro B:227
4Thr B:245 -Pro B:246
5Ile C:226 -Pro C:227
6Thr C:245 -Pro C:246
7Ile D:226 -Pro D:227
8Thr D:245 -Pro D:246

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HUU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HUU)

(-) Exons   (0, 0)

(no "Exon" information available for 3HUU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:265
 aligned with Q4L6K9_STAHJ | Q4L6K9 from UniProtKB/TrEMBL  Length:295

    Alignment length:277
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       
         Q4L6K9_STAHJ    19 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSMNDLRDFIKQYCIDASHMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNTSFLTENATPSQTSVNINPDVLGFTAGNTIIDVLRNETISFREKLISTQIVERVSTTKI 295
               SCOP domains d3huua_ A: automated matches                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....hhhhhhhhhhhhhhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhh....eeee......hhhhhhhhhh...eeee..........eee.hhhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhh--------....eeee.hhhhhhhhhhhhhhh........eeeee..hhhhhh.....eeee.hhhhhhhhhhhhhhhhhh.----..eee...eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3huu A  19 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSMNDLRDFI--------HMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNTSFLTENATPSQTSVNINPDVLGFTAGNTIIDVLRN----FREKLISTQIVERVSTTKI 295
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188 |       -|      208       218       228       238       248       258       268   |   278       288       
                                                                                                                                                                                                     190      199                                                                      272  277                  


Chain B from PDB  Type:PROTEIN  Length:260
 aligned with Q4L6K9_STAHJ | Q4L6K9 from UniProtKB/TrEMBL  Length:295

    Alignment length:275
                                                                                                                                                                                                                                                                                                           295 
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291   | 
         Q4L6K9_STAHJ    22 TIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSMNDLRDFIKQYCIDASHMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNTSFLTENATPSQTSVNINPDVLGFTAGNTIIDVLRNETISFREKLISTQIVERVSTTKI-   -
               SCOP domains d3huub_ B: automated matches                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee....hhhhhhhhhhhhhhhhhhhhhhhh...eee....hhhhhhhhhhhhhhh....eeee......hhhhhhhhhh...eeee..........eeeehhhhhhhhhhhhhhh.....eeeeee...hhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhh---------...eeee.hhhhhhhhhhhhhhh........eeeee..hhhhhh.....eeee.hhhhhhhhhhhhhhhhh.------.eeee..eee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3huu B  22 TIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSMNDLRDFI---------MPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNTSFLTENATPSQTSVNINPDVLGFTAGNTIIDVLR------REKLISTQIVERVSTTKIE 296
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181        |-       201       211       221       231       241       251       261       271      |281       291     
                                                                                                                                                                                                  190       200                                                                    271    278                  


Chain C from PDB  Type:PROTEIN  Length:267
 aligned with Q4L6K9_STAHJ | Q4L6K9 from UniProtKB/TrEMBL  Length:295

    Alignment length:277
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       
         Q4L6K9_STAHJ    19 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSMNDLRDFIKQYCIDASHMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNTSFLTENATPSQTSVNINPDVLGFTAGNTIIDVLRNETISFREKLISTQIVERVSTTKI 295
               SCOP domains d3huuc_ C: automated matches                                                                                                                                                                                                                                                          SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee....hhhhhhhhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhhh....eeee......hhhhhhhhhh...eeee..........eee.hhhhhhhhhhhhhhhhh...eeeeee...hhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhhh..------...eeee.hhhhhhhhhhhhhhh........eeeee..hhhhhh.....eeee.hhhhhhhhhhhhhhhhh..----..eee...eee........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3huu C  19 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSMNDLRDFIKQY------MPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNTSFLTENATPSQTSVNINPDVLGFTAGNTIIDVLRN----FREKLISTQIVERVSTTKI 295
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188    |    - |     208       218       228       238       248       258       268   |   278       288       
                                                                                                                                                                                                        193    200                                                                     272  277                  


Chain D from PDB  Type:PROTEIN  Length:265
 aligned with Q4L6K9_STAHJ | Q4L6K9 from UniProtKB/TrEMBL  Length:295

    Alignment length:276
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288      
         Q4L6K9_STAHJ    19 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSMNDLRDFIKQYCIDASHMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNTSFLTENATPSQTSVNINPDVLGFTAGNTIIDVLRNETISFREKLISTQIVERVSTTK 294
               SCOP domains d3huud_ D: automated matches                                                                                                                                                                                                                                                         SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee....hhhhhhhhhhhhhhhhhhhhhhhhh.eeee....hhhhhhhhhhhhhhh....eeee......hhhhhhhhhh...eeee..........eeeehhhhhhhhhhhhhhhh....eeeeee...hhhhhhhhhhhhhhhhhh.....eeee.hhhhhhhhh--------....eeee.hhhhhhhhhhhhhhh........eeeee..hhhhhh.....eeee.hhhhhhhhhhhhhhhhhh---....eeee..eee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3huu D  19 KTLTIGLIQKSSAPEIRQNPFNSDVLNGINQACNVRGYSTRMTVSENSGDLYHEVKTMIQSKSVDGFILLYSLKDDPIEHLLNEFKVPYLIVGKSLNYENIIHIDNDNIDAAYQLTQYLYHLGHRHILFLQESGHYAVTEDRSVGFKQYCDDVKISNDCVVIKSMNDLRDFI--------HMPSVIITSDVMLNMQLLNVLYEYQLRIPEDIQTATFNTSFLTENATPSQTSVNINPDVLGFTAGNTIIDVLR---ISFREKLISTQIVERVSTTK 294
                                    28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188 |       -|      208       218       228       238       248       258       268  |   |278       288      
                                                                                                                                                                                                     190      199                                                                     271 275
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HUU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HUU)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3HUU)

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  Cis Peptide Bonds
    Ile A:226 - Pro A:227   [ RasMol ]  
    Ile B:226 - Pro B:227   [ RasMol ]  
    Ile C:226 - Pro C:227   [ RasMol ]  
    Ile D:226 - Pro D:227   [ RasMol ]  
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