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(-) Description

Title :  THE STRUCTURE OF INTACT AP-TBPB (N AND C LOBES)
 
Authors :  T. F. Moraes, R. H. Yu, A. B. Schryvers, N. C. J. Strynadka
Date :  02 Jun 09  (Deposition) - 06 Oct 09  (Release) - 06 Oct 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.98
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferrin Receptor, Iron Acquisition, Vaccine, Lipoprotein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. F. Moraes, R. H. Yu, N. C. Strynadka, A. B. Schryvers
Insights Into The Bacterial Transferrin Receptor: The Structure Of Transferrin-Binding Protein B From Actinobacillus Pleuropneumoniae.
Mol. Cell V. 35 523 2009
PubMed-ID: 19716795  |  Reference-DOI: 10.1016/J.MOLCEL.2009.06.029
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TBPB
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 39-547
    Gene: TBPB
    Organism Scientific: ACTINOBACILLUS PLEUROPNEUMONIAE
    Organism Taxid: 715
    Synonym: TRANSFERRIN BINDING PROTEIN 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 3HOL)

(-) Sites  (0, 0)

(no "Site" information available for 3HOL)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:351 -A:352

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Glu A:24 -Glu A:25
2Cys A:351 -Cys A:352
3Glu A:368 -Gly A:369

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HOL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HOL)

(-) Exons   (0, 0)

(no "Exon" information available for 3HOL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:505
 aligned with Q44124_ACTPL | Q44124 from UniProtKB/TrEMBL  Length:547

    Alignment length:505
                                    52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482       492       502       512       522       532       542     
         Q44124_ACTPL    43 EEYKDVETAKKEKEQLGELMEPALGYVVKVPVSSFENKKVDISDIEVITNGNLDDVPYKANSSKYNYPDIKTKDSSLQYVRSGYVIDGEHSGSNEKGYVYYKGNSPAKELPVNQLLTYTGSWDFTSNANLNNEEGRPNYLNDDYYTKFIGKRVGLVSGDAKPAKHKYTSQFEVDFATKKMTGKLSDKEKTIYTVNADIRGNRFTGAATASDKNKGKGESYNFFSADSQSLEGGFYGPKAEEMAGKFVANDKSLFAVFSAKHNGSNVDTVRIIDASKIDLTNFSISELNNFGDASVLIIDGKKIKLAGSGFTNKHTIEINGKTMVAVACCSNLEYMKFGQLWQQAEGGKPENNSLFLQGERTATDKMPKGGNYKYIGTWDAQVSKENNWVATADDDRKAGYRTEFDVDFGNKNLSGKLFDKNGVNPVFTVDPKIDGNGFTGKAKTSDAGFALDSGSSRYENVKFNDVAVSGGFYGPTAAELGGQFHHKSENGSVGAVFGAKQQVKK 547
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee...................eeeee.........ee.....eee.........hhhhhh....eee.........eeeeeeee.........eeeeeee.....eee...eeeeeeeeeeee.ee.hhhhh....................hhhhh......eeeeeeee....eeeeeeee..eeeeeeeeeee..eeeeeeee......hhhhh......eeeeeeeee.....eeeeeee.....eeeeeeeee......eee.eeeeeee....eeee........eeee..eeee......eeeeeeee..eeeeeeee......eeeeeeee.......eeeeeeeeee..hhhhh....eeeeeeeeeeeee...eeee..........eeeeeee....eeeeee.........eeeeeeee..eeeeeee......................eeeeeeee.....eeeeeeeeee..eeeeeeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hol A  24 EEYKDVETAKKEKEQLGELMEPALGYVVKVPVSSFENKKVDISDIEVITNGNLDDVPYKANSSKYNYPDIKTKDSSLQYVRSGYVIDGEHSGSNEKGYVYYKGNSPAKELPVNQLLTYTGSWDFTSNANLNNEEGRPNYLNDDYYTKFIGKRVGLVSGDAKPAKHKYTSQFEVDFATKKMTGKLSDKEKTIYTVNADIRGNRFTGAATASDKNKGKGESYNFFSADSQSLEGGFYGPKAEEMAGKFVANDKSLFAVFSAKHNGSNVDTVRIIDASKIDLTNFSISELNNFGDASVLIIDGKKIKLAGSGFTNKHTIEINGKTMVAVACCSNLEYMKFGQLWQQAEGGKPENNSLFLQGERTATDKMPKGGNYKYIGTWDAQVSKENNWVATADDDRKAGYRTEFDVDFGNKNLSGKLFDKNGVNPVFTVDPKIDGNGFTGKAKTSDAGFALDSGSSRYENVKFNDVAVSGGFYGPTAAELGGQFHHKSENGSVGAVFGAKQQVKK 528
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453       463       473       483       493       503       513       523
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HOL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HOL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HOL)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q44124_ACTPL | Q44124)
cellular component
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  Sites
(no "Sites" information available for 3hol)
 
  Cis Peptide Bonds
    Cys A:351 - Cys A:352   [ RasMol ]  
    Glu A:24 - Glu A:25   [ RasMol ]  
    Glu A:368 - Gly A:369   [ RasMol ]  
 

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  3hol
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  Q44124_ACTPL | Q44124
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q44124_ACTPL | Q44124: 3hoe

(-) Related Entries Specified in the PDB File

3hoe CRYSTAL STRUCTURE OF SURFACE LIPOPROTEIN (CASP TARGET)