3HM8 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE C-TERMINAL HEXOKINASE DOMAIN OF HUMAN HK3

Authors :   L. Nedyalkova, Y. Tong, W. Rabeh, W. Tempel, R. Landry, C. H. Arrowsmith A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, H. Park, Structur Genomics Consortium (Sgc)

Date :   28 May 09 (Deposition) - 11 Aug 09 (Release) - 15 Jun 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Glucose, Glucose-6-Phosphate, Non-Protein Kinase, Hexokinase, Structural Genomics, Structural Genomics Consortium, Sgc, Allosteric Enzyme, Atp-Binding, Glycolysis, Kinase, Nucleotide-Binding, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Nedyalkova, Y. Tong, W. Rabeh, W. Tempel, R. Landry, C. H. Arrowsmith, A. M. Edwards, C. Bountra, J. Weigelt, A. Bochkarev, H. Park
Crystal Structure Of The C-Terminal Hexokinase Domain Of Human Hk3
To Be Published
PubMed: search

Molecule 1 - HEXOKINASE-3
	Chains	:	A, B, C, D
	EC Number	:	2.7.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28A-LIC
	Expression System Strain	:	BL21-CODONPLUS(DE3)-RIL
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	HK3
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	HEXOKINASE TYPE III, HK III

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	BG6	4	Ligand/Ion	BETA-D-GLUCOSE-6-PHOSPHATE
2	GLC	4	Ligand/Ion	ALPHA-D-GLUCOSE

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	BG6	1	Ligand/Ion	BETA-D-GLUCOSE-6-PHOSPHATE
2	GLC	1	Ligand/Ion	ALPHA-D-GLUCOSE

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	BG6	1	Ligand/Ion	BETA-D-GLUCOSE-6-PHOSPHATE
2	GLC	1	Ligand/Ion	ALPHA-D-GLUCOSE

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	BG6	1	Ligand/Ion	BETA-D-GLUCOSE-6-PHOSPHATE
2	GLC	1	Ligand/Ion	ALPHA-D-GLUCOSE

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	BG6	1	Ligand/Ion	BETA-D-GLUCOSE-6-PHOSPHATE
2	GLC	1	Ligand/Ion	ALPHA-D-GLUCOSE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:609 , PHE A:610 , THR A:626 , LYS A:627 , ASN A:662 , ASP A:663 , THR A:664 , ILE A:683 , THR A:688 , ASN A:689 , GLU A:714 , GLN A:745 , GLU A:748	BINDING SITE FOR RESIDUE GLC A 1001
2	AC2	SOFTWARE	ASP A:542 , GLY A:545 , THR A:546 , ASP A:663 , GLY A:685 , THR A:686 , ASP A:867 , GLY A:868 , THR A:869 , GLY A:902 , SER A:903	BINDING SITE FOR RESIDUE BG6 A 1002
3	AC3	SOFTWARE	SER B:609 , PHE B:610 , THR B:626 , LYS B:627 , ASN B:662 , ASP B:663 , ILE B:683 , GLY B:687 , THR B:688 , ASN B:689 , GLU B:714 , GLN B:745 , GLU B:748	BINDING SITE FOR RESIDUE GLC B 1001
4	AC4	SOFTWARE	ASP B:542 , THR B:546 , ASP B:663 , GLY B:685 , THR B:686 , ASP B:867 , GLY B:868 , THR B:869 , GLY B:902 , SER B:903	BINDING SITE FOR RESIDUE BG6 B 1002
5	AC5	SOFTWARE	SER C:609 , PHE C:610 , THR C:626 , LYS C:627 , ASN C:662 , ASP C:663 , ILE C:683 , THR C:688 , ASN C:689 , GLU C:714 , GLN C:745 , GLU C:748	BINDING SITE FOR RESIDUE GLC C 1001
6	AC6	SOFTWARE	ASP C:542 , GLY C:545 , THR C:546 , ASP C:663 , GLY C:685 , THR C:686 , ASP C:867 , GLY C:868 , THR C:869 , GLY C:902 , SER C:903	BINDING SITE FOR RESIDUE BG6 C 1002
7	AC7	SOFTWARE	SER D:609 , PHE D:610 , THR D:626 , LYS D:627 , ASN D:662 , ASP D:663 , ILE D:683 , THR D:688 , ASN D:689 , GLU D:714 , GLN D:745 , GLU D:748	BINDING SITE FOR RESIDUE GLC D 1001
8	AC8	SOFTWARE	ASP D:542 , GLY D:545 , THR D:546 , ASP D:663 , GLY D:685 , THR D:686 , ASP D:867 , GLY D:868 , THR D:869 , GLY D:902 , SER D:903	BINDING SITE FOR RESIDUE BG6 D 1002

(no "SS Bond" information available for 3HM8)

(no "Cis Peptide Bond" information available for 3HM8)

Asymmetric Unit (4, 16)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_036186	R	480	W	HXK3_HUMAN	Unclassified	376532514	A/B/C/D	R	480	W
2	CancerSNP	VAR_HXK3_HUMAN_CCDS4407_1_01 *	R	480	W	HXK3_HUMAN	Disease (Colorectal cancer)	---	A/B/C/D	R	480	W
3	UniProt	VAR_036187	A	499	V	HXK3_HUMAN	Unclassified	755546220	A/B/C/D	A	499	V
4	CancerSNP	VAR_HXK3_HUMAN_CCDS4407_1_02 *	A	499	V	HXK3_HUMAN	Disease (Breast cancer)	---	A/B/C/D	A	499	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (4, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_036186	R	480	W	HXK3_HUMAN	Unclassified	376532514	A	R	480	W
2	CancerSNP	VAR_HXK3_HUMAN_CCDS4407_1_01 *	R	480	W	HXK3_HUMAN	Disease (Colorectal cancer)	---	A	R	480	W
3	UniProt	VAR_036187	A	499	V	HXK3_HUMAN	Unclassified	755546220	A	A	499	V
4	CancerSNP	VAR_HXK3_HUMAN_CCDS4407_1_02 *	A	499	V	HXK3_HUMAN	Disease (Breast cancer)	---	A	A	499	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (4, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_036186	R	480	W	HXK3_HUMAN	Unclassified	376532514	B	R	480	W
2	CancerSNP	VAR_HXK3_HUMAN_CCDS4407_1_01 *	R	480	W	HXK3_HUMAN	Disease (Colorectal cancer)	---	B	R	480	W
3	UniProt	VAR_036187	A	499	V	HXK3_HUMAN	Unclassified	755546220	B	A	499	V
4	CancerSNP	VAR_HXK3_HUMAN_CCDS4407_1_02 *	A	499	V	HXK3_HUMAN	Disease (Breast cancer)	---	B	A	499	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 3 (4, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_036186	R	480	W	HXK3_HUMAN	Unclassified	376532514	C	R	480	W
2	CancerSNP	VAR_HXK3_HUMAN_CCDS4407_1_01 *	R	480	W	HXK3_HUMAN	Disease (Colorectal cancer)	---	C	R	480	W
3	UniProt	VAR_036187	A	499	V	HXK3_HUMAN	Unclassified	755546220	C	A	499	V
4	CancerSNP	VAR_HXK3_HUMAN_CCDS4407_1_02 *	A	499	V	HXK3_HUMAN	Disease (Breast cancer)	---	C	A	499	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 4 (4, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_036186	R	480	W	HXK3_HUMAN	Unclassified	376532514	D	R	480	W
2	CancerSNP	VAR_HXK3_HUMAN_CCDS4407_1_01 *	R	480	W	HXK3_HUMAN	Disease (Colorectal cancer)	---	D	R	480	W
3	UniProt	VAR_036187	A	499	V	HXK3_HUMAN	Unclassified	755546220	D	A	499	V
4	CancerSNP	VAR_HXK3_HUMAN_CCDS4407_1_02 *	A	499	V	HXK3_HUMAN	Disease (Breast cancer)	---	D	A	499	V
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXOKINASE_1	PS00378	Hexokinase domain signature.	HXK3_HUMAN	604-629	4	A:604-629 B:604-629 C:604-629 D:604-629

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXOKINASE_1	PS00378	Hexokinase domain signature.	HXK3_HUMAN	604-629	1	A:604-629 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXOKINASE_1	PS00378	Hexokinase domain signature.	HXK3_HUMAN	604-629	1	- B:604-629 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXOKINASE_1	PS00378	Hexokinase domain signature.	HXK3_HUMAN	604-629	1	- - C:604-629 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HEXOKINASE_1	PS00378	Hexokinase domain signature.	HXK3_HUMAN	604-629	1	- - - D:604-629

(no "Exon" information available for 3HM8)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:441
 aligned with HXK3_HUMAN | P52790 from UniProtKB/Swiss-Prot  Length:923

    Alignment length:441
                                   488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918 
           HXK3_HUMAN   479 HRRLLEETLAPFRLNHDQLAAVQAQMRKAMAKGLRGEASSLRMLPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTGVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLSGQSLPLGFTFSFPCRQLGLDQGILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVPGDSGRMCINMEWGAFGDDGSLAMLSTRFDASVDQASINPGKQRFEKMISGMYLGEIVRHILLHLTSLGVLFRGQQIQRLQTRDIFKTKFLSEIESDSLALRQVRAILEDLGLPLTSDDALMVLEVCQAVSQRAAQLCGAGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSEDGSGKGAALVTAVACRLAQ 919
               SCOP domains d3hm8a1 A:479-676 automated matches                                                                                                                                                                   d3hm8a2 A:677-919 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains 3hm8A01 A:479-523,A:674-900                  ------------------------------------------------------------------------------------------------------------------------------------------------------3hm8A01 A:479-523,A:674-900  [code=3.40.367.20, no name defined]                                                                                                                                                                   ------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......ee............eeeeeeee....eeeeeeee...eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhh.......eeeee...ee.......ee...............hhhhhhhhhhhhh.......eeeehhhhhhhhhhhh....eeeeeee...eeeeeeee.hhh........eeeee.hhhhh..........hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh..hhhhh.hhhhhh....hhhhhhhhh....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeehhhhhhh.hhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -W------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -W------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------HEXOKINASE_1              -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hm8 A 479 SRRLLEETLAPFRLNHDQLAAVQAQMRKAMAKGLRGEASSLRMLPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTGVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLSGQSLPLGFTFSFPCRQLGLDQGILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVPGDSGRMCINMEWGAFGDDGSLAMLSTRFDASVDQASINPGKQRFEKMISGMYLGEIVRHILLHLTSLGVLFRGQQIQRLQTRDIFKTKFLSEIESDSLALRQVRAILEDLGLPLTSDDALMVLEVCQAVSQRAAQLCGAGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSEDGSGKGAALVTAVACRLAQ 919
                                   488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918

Chain B from PDB  Type:PROTEIN  Length:441
 aligned with HXK3_HUMAN | P52790 from UniProtKB/Swiss-Prot  Length:923

    Alignment length:441
                                   488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918 
           HXK3_HUMAN   479 HRRLLEETLAPFRLNHDQLAAVQAQMRKAMAKGLRGEASSLRMLPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTGVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLSGQSLPLGFTFSFPCRQLGLDQGILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVPGDSGRMCINMEWGAFGDDGSLAMLSTRFDASVDQASINPGKQRFEKMISGMYLGEIVRHILLHLTSLGVLFRGQQIQRLQTRDIFKTKFLSEIESDSLALRQVRAILEDLGLPLTSDDALMVLEVCQAVSQRAAQLCGAGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSEDGSGKGAALVTAVACRLAQ 919
               SCOP domains d3hm8b1 B:479-676 automated matches                                                                                                                                                                   d3hm8b2 B:677-919 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains 3hm8B01 B:479-523,B:674-900                  ------------------------------------------------------------------------------------------------------------------------------------------------------3hm8B01 B:479-523,B:674-900  [code=3.40.367.20, no name defined]                                                                                                                                                                   ------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......ee............eeeeeeee....eeeeeeee...eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhh.......eeeee...eeeee..eeee...............hhhhhhhhhhhhhh......eeeehhhhhhhhhhhh....eeeeeee...eeeeeeee.hhh........eeeee.hhhhh..........hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh........hhhhhh....hhhhhhhhh....hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeehhhhhhh.hhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -W------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -W------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------HEXOKINASE_1              -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hm8 B 479 SRRLLEETLAPFRLNHDQLAAVQAQMRKAMAKGLRGEASSLRMLPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTGVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLSGQSLPLGFTFSFPCRQLGLDQGILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVPGDSGRMCINMEWGAFGDDGSLAMLSTRFDASVDQASINPGKQRFEKMISGMYLGEIVRHILLHLTSLGVLFRGQQIQRLQTRDIFKTKFLSEIESDSLALRQVRAILEDLGLPLTSDDALMVLEVCQAVSQRAAQLCGAGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSEDGSGKGAALVTAVACRLAQ 919
                                   488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918

Chain C from PDB  Type:PROTEIN  Length:436
 aligned with HXK3_HUMAN | P52790 from UniProtKB/Swiss-Prot  Length:923

    Alignment length:440
                                   489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769       779       789       799       809       819       829       839       849       859       869       879       889       899       909       919
           HXK3_HUMAN   480 RRLLEETLAPFRLNHDQLAAVQAQMRKAMAKGLRGEASSLRMLPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTGVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLSGQSLPLGFTFSFPCRQLGLDQGILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVPGDSGRMCINMEWGAFGDDGSLAMLSTRFDASVDQASINPGKQRFEKMISGMYLGEIVRHILLHLTSLGVLFRGQQIQRLQTRDIFKTKFLSEIESDSLALRQVRAILEDLGLPLTSDDALMVLEVCQAVSQRAAQLCGAGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSEDGSGKGAALVTAVACRLAQ 919
               SCOP domains d3hm8c1 C:480-676 automated matches                                                                                                                                                                  d3hm8c2 C:677-919 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains 3hm8C01 C:480-523,C:674-900                 ------------------------------------------------------------------------------------------------------------------------------------------------------3hm8C01 C:480-523,C:674-900  [code=3.40.367.20, no name defined]                                                                                                                                                                   ------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......ee............eeeeeeee....eeeeeeee...eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhh.......eeeee...ee.......ee...............hhhhhhhhhhhhhh......eeeehhhhhhhhhhhh....eeeeeee...eeeeeeee.hhh........eeeee.hhhhh..........hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh....----hhhhhh....hhhhhhhhh....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeehhhhhhh.hhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) W------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) W------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------HEXOKINASE_1              -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hm8 C 480 RRLLEETLAPFRLNHDQLAAVQAQMRKAMAKGLRGEASSLRMLPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTGVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLSGQSLPLGFTFSFPCRQLGLDQGILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVPGDSGRMCINMEWGAFGDDGSLAMLSTRFDASVDQASINPGKQRFEKMISGMYLGEIVRHILLHLTSLGVLF----IQRLQTRDIFKTKFLSEIESDSLALRQVRAILEDLGLPLTSDDALMVLEVCQAVSQRAAQLCGAGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSEDGSGKGAALVTAVACRLAQ 919
                                   489       499       509       519       529       539       549       559       569       579       589       599       609       619       629       639       649       659       669       679       689       699       709       719       729       739       749       759       769    |  779       789       799       809       819       829       839       849       859       869       879       889       899       909       919
                                                                                                                                                                                                                                                                                                                                774  779

Chain D from PDB  Type:PROTEIN  Length:437
 aligned with HXK3_HUMAN | P52790 from UniProtKB/Swiss-Prot  Length:923

    Alignment length:441
                                   488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768       778       788       798       808       818       828       838       848       858       868       878       888       898       908       918 
           HXK3_HUMAN   479 HRRLLEETLAPFRLNHDQLAAVQAQMRKAMAKGLRGEASSLRMLPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTGVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLSGQSLPLGFTFSFPCRQLGLDQGILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVPGDSGRMCINMEWGAFGDDGSLAMLSTRFDASVDQASINPGKQRFEKMISGMYLGEIVRHILLHLTSLGVLFRGQQIQRLQTRDIFKTKFLSEIESDSLALRQVRAILEDLGLPLTSDDALMVLEVCQAVSQRAAQLCGAGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSEDGSGKGAALVTAVACRLAQ 919
               SCOP domains d3hm8d1 D:479-676 automated matches                                                                                                                                                                   d3hm8d2 D:677-919 automated matches                                                                                                                                                                                                                 SCOP domains
               CATH domains 3hm8D01 D:479-523,D:674-900                  ------------------------------------------------------------------------------------------------------------------------------------------------------3hm8D01 D:479-523,D:674-900  [code=3.40.367.20, no name defined]                                                                                                                                                                   ------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.......ee............eeeeeeee....eeeeeeee...eeeeeeee..hhhhhh.hhhhhhhhhhhhhhhhhhhhh.......eeeee...eeeee..eeee...............hhhhhhhhhhhhhh......eeeehhhhhhhhhhhh....eeeeeee...eeeeeeee.hhh........eeeee.hhhhh..........hhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh....----hhhhhh....hhhhhhhhh....hhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeeeeehhhhhhh.hhhhhhhhhhhhhh..eeeeeee...hhhhhhhhhhhhhhhhhh Sec.struct. author
             SAPs(SNPs) (1) -W------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (1)
             SAPs(SNPs) (2) -W------------------V------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs) (2)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------HEXOKINASE_1              -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hm8 D 479 SRRLLEETLAPFRLNHDQLAAVQAQMRKAMAKGLRGEASSLRMLPTFVRATPDGSERGDFLALDLGGTNFRVLLVRVTTGVQITSEIYSIPETVAQGSGQQLFDHIVDCIVDFQQKQGLSGQSLPLGFTFSFPCRQLGLDQGILLNWTKGFKASDCEGQDVVSLLREAITRRQAVELNVVAIVNDTVGTMMSCGYEDPRCEIGLIVGTGTNACYMEELRNVAGVPGDSGRMCINMEWGAFGDDGSLAMLSTRFDASVDQASINPGKQRFEKMISGMYLGEIVRHILLHLTSLGVLF----IQRLQTRDIFKTKFLSEIESDSLALRQVRAILEDLGLPLTSDDALMVLEVCQAVSQRAAQLCGAGVAAVVEKIRENRGLEELAVSVGVDGTLYKLHPRFSSLVAATVRELAPRCVVTFLQSEDGSGKGAALVTAVACRLAQ 919
                                   488       498       508       518       528       538       548       558       568       578       588       598       608       618       628       638       648       658       668       678       688       698       708       718       728       738       748       758       768     |   -|      788       798       808       818       828       838       848       858       868       878       888       898       908       918 
                                                                                                                                                                                                                                                                                                                                 774  779

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Ribonuclease H-like motif (1424)

Superfamily: Actin-like ATPase domain (426)

Family: automated matches (111)

Protein domain: automated matches (111)

Human (Homo sapiens) [TaxId: 9606] (38)

1a	d3hm8a1	A:479-676
1b	d3hm8a2	A:677-919
1c	d3hm8b1	B:479-676
1d	d3hm8b2	B:677-919
1e	d3hm8c1	C:480-676
1f	d3hm8c2	C:677-919
1g	d3hm8d1	D:479-676
1h	d3hm8d2	D:677-919

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Hexokinase; domain 1 (22)

Homologous Superfamily: [code=3.40.367.20, no name defined] (22)

Human (Homo sapiens) (16)

1a	3hm8C01	C:480-523,C:674-900
1b	3hm8D01	D:479-523,D:674-900
1c	3hm8A01	A:479-523,A:674-900
1d	3hm8B01	B:479-523,B:674-900

(no "Pfam Domain" information available for 3HM8)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (HXK3_HUMAN | P52790)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0008865	fructokinase activity	Catalysis of the reaction: ATP + D-fructose = ADP + D-fructose 6-phosphate.
	GO:0004340	glucokinase activity	Catalysis of the reaction: ATP + D-glucose = ADP + D-glucose-6-phosphate.
	GO:0005536	glucose binding	Interacting selectively and non-covalently with the D- or L-enantiomer of glucose.
	GO:0004396	hexokinase activity	Catalysis of the reaction: ATP + D-hexose = ADP + D-hexose 6-phosphate.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0019158	mannokinase activity	Catalysis of the reaction: ATP + D-mannose = ADP + D-mannose 6-phosphate.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016773	phosphotransferase activity, alcohol group as acceptor	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to an alcohol group (acceptor).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0061621	canonical glycolysis	The glycolytic process that begins with the conversion of glucose to glucose-6-phosphate by glucokinase activity. Glycolytic processes are the chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP.
	GO:0005975	carbohydrate metabolic process	The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
	GO:0046835	carbohydrate phosphorylation	The process of introducing a phosphate group into a carbohydrate, any organic compound based on the general formula Cx(H2O)y.
	GO:0001678	cellular glucose homeostasis	A cellular homeostatic process involved in the maintenance of an internal steady state of glucose within a cell or between a cell and its external environment.
	GO:0051156	glucose 6-phosphate metabolic process	The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6.
	GO:0015758	glucose transport	The directed movement of the hexose monosaccharide glucose into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006096	glycolytic process	The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
	GO:0019318	hexose metabolic process	The chemical reactions and pathways involving a hexose, any monosaccharide with a chain of six carbon atoms in the molecule.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005739	mitochondrion	A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

Asymmetric Unit
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	3hm8
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(no "Entries Sharing at Least One Protein Chain" available for 3HM8)

(no "Related Entries Specified in the PDB File" available for 3HM8)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (4, 16)

PROSITE Motifs (1, 4)

Exons (0, 0)

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