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(-) Description

Title :  CRYSTAL STRUCTURE OF BT_1490 (NP_810393.1) FROM BACTEROIDES THETAIOTAOMICRON VPI-5482 AT 1.50 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  28 May 09  (Deposition) - 16 Jun 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Np_810393. 1, Bt_1490, Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Bt_1490 (Np_810393. 1) From Bacteroides Thetaiotaomicron Vpi-5482 At 1. 50 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN BT_1490
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: BT_1480, NP_810393.1
    Organism Scientific: BACTEROIDES THETAIOTAOMICRON VPI-5482
    Organism Taxid: 226186

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 19)

Asymmetric Unit (4, 19)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
2CA1Ligand/IonCALCIUM ION
3GOL4Ligand/IonGLYCEROL
4MSE10Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (3, 10)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3GOL3Ligand/IonGLYCEROL
4MSE5Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (3, 8)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2CA-1Ligand/IonCALCIUM ION
3GOL1Ligand/IonGLYCEROL
4MSE5Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:22 , GLU A:23 , ILE A:150 , HOH A:280 , HOH A:414 , ASN B:51 , ALA B:52BINDING SITE FOR RESIDUE GOL A 269
2AC2SOFTWAREASN A:51 , ALA A:52 , ASN B:22 , GLU B:23 , ILE B:150 , HOH B:275 , HOH B:308BINDING SITE FOR RESIDUE GOL A 270
3AC3SOFTWAREILE A:150 , ASN A:154 , TRP A:219 , SER B:53 , ASP B:57BINDING SITE FOR RESIDUE GOL A 271
4AC4SOFTWAREARG A:227 , VAL A:229 , MSE A:242 , HOH A:490BINDING SITE FOR RESIDUE ACT A 272
5AC5SOFTWAREILE A:239 , ASP A:240 , LYS A:243BINDING SITE FOR RESIDUE ACT A 273
6AC6SOFTWAREMSE B:1 , GLN B:2 , ASN B:16 , TYR B:17 , VAL B:125 , CA B:272 , HOH B:309 , HOH B:458BINDING SITE FOR RESIDUE GOL B 269
7AC7SOFTWARELEU B:200 , ARG B:227 , VAL B:229 , HOH B:433BINDING SITE FOR RESIDUE ACT B 270
8AC8SOFTWARETHR B:238 , ILE B:239 , ASP B:240 , LYS B:243BINDING SITE FOR RESIDUE ACT B 271
9AC9SOFTWAREMSE B:1 , GOL B:269 , HOH B:377 , HOH B:378 , HOH B:404 , HOH B:458BINDING SITE FOR RESIDUE CA B 272

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HLZ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3HLZ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HLZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HLZ)

(-) Exons   (0, 0)

(no "Exon" information available for 3HLZ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:268
 aligned with Q8A7P4_BACTN | Q8A7P4 from UniProtKB/TrEMBL  Length:268

    Alignment length:268
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260        
         Q8A7P4_BACTN     1 MQGKKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFKGNASYGKDAIRQELKENDSASLVKIGTWDCAYSKEMFQEEGTYYTSHLWITGTGNIAFECSFTVPKGGSAKEAEEVIATLEARKEGEKYPAELIPVRLSEIYQINEGYEWVVSTVKQELKKDFQGVEEDLEKIQQVIDSGKISPKKKDEWLAIGITVCAILTNEVEGMEWKTLIDGNREVPVLEYQGRTIDPMKIAWSKVKAGQPCNIAEAYQSAIDHH 268
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee.hhh.eeeee....eee.....eeeee.......eeeeeeee...hhhhhhhhhhhhhh...eeeee..eeeeeeeeeeee..eeeeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhee.........eeee.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh...eeeeeee..eeeeeeee..eeehhhhhhhhhhhh....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hlz A   1 mQGKKFISPGAWFSmNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFKGNASYGKDAIRQELKENDSASLVKIGTWDCAYSKEmFQEEGTYYTSHLWITGTGNIAFECSFTVPKGGSAKEAEEVIATLEARKEGEKYPAELIPVRLSEIYQINEGYEWVVSTVKQELKKDFQGVEEDLEKIQQVIDSGKISPKKKDEWLAIGITVCAILTNEVEGmEWKTLIDGNREVPVLEYQGRTIDPmKIAWSKVKAGQPCNIAEAYQSAIDHH 268
                            |       10    |   20        30        40        50        60        70        80    |   90       100       110       120       130       140       150       160       170       180       190       200       210      |220       230       240 |     250       260        
                            |            15-MSE                                                                85-MSE                                                                                                                             217-MSE                  242-MSE                      
                            1-MSE                                                                                                                                                                                                                                                                       


Chain B from PDB  Type:PROTEIN  Length:269
 aligned with Q8A7P4_BACTN | Q8A7P4 from UniProtKB/TrEMBL  Length:268

    Alignment length:269
                             1                                                                                                                                                                                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259         
         Q8A7P4_BACTN     - -MQGKKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFKGNASYGKDAIRQELKENDSASLVKIGTWDCAYSKEMFQEEGTYYTSHLWITGTGNIAFECSFTVPKGGSAKEAEEVIATLEARKEGEKYPAELIPVRLSEIYQINEGYEWVVSTVKQELKKDFQGVEEDLEKIQQVIDSGKISPKKKDEWLAIGITVCAILTNEVEGMEWKTLIDGNREVPVLEYQGRTIDPMKIAWSKVKAGQPCNIAEAYQSAIDHH 268
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee.hhh.eeeee....eee.....eeeee.......eeeeeeee...hhhhhhhhhhhhhh...eeeee..eeeeeeeeeeee..eeeeeeeeeeee..eeeeeeeeee....hhhhhhhhhhhee.........eeee.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh...eeeeeee..eeeeeeee..eeehhhhhhhhhhhh....hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hlz B   0 GmQGKKFISPGAWFSmNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAFKGNASYGKDAIRQELKENDSASLVKIGTWDCAYSKEmFQEEGTYYTSHLWITGTGNIAFECSFTVPKGGSAKEAEEVIATLEARKEGEKYPAELIPVRLSEIYQINEGYEWVVSTVKQELKKDFQGVEEDLEKIQQVIDSGKISPKKKDEWLAIGITVCAILTNEVEGmEWKTLIDGNREVPVLEYQGRTIDPmKIAWSKVKAGQPCNIAEAYQSAIDHH 268
                             |       9     |  19        29        39        49        59        69        79     |  89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239  |    249       259         
                             1-MSE        15-MSE                                                                85-MSE                                                                                                                             217-MSE                  242-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HLZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HLZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HLZ)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3HLZ)

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