3HL2 - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   THE CRYSTAL STRUCTURE OF THE HUMAN SEPSECS-TRNASEC COMPLEX

Authors :   S. Palioura, T. A. Steitz, D. Soll, M Simonovic

Date :   26 May 09 (Deposition) - 06 Oct 09 (Release) - 06 Oct 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.81

Chains :   Asym. Unit : A,B,C,D,E
Biol. Unit 1: A (2x),B (2x),E (1x)
Biol. Unit 2: C (2x),D (2x),E (1x)

Keywords :   Selenocysteine, Trnasec, Sepsecs, Protein-Rna Complex, Alternative Splicing, Cytoplasm, Protein Biosynthesis, Pyridoxal Phosphate, Selenium, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   S. Palioura, R. L. Sherrer, T. A. Steitz, D. Soll, M. Simonovic
The Human Sepsecs-Trnasec Complex Reveals The Mechanism Of Selenocysteine Formation.
Science V. 325 321 2009
PubMed-ID: 19608919 | Reference-DOI: 10.1126/SCIENCE.1173755
(for further references see the PDB file header)

Molecule 1 - O-PHOSPHOSERYL-TRNA(SEC) SELENIUM TRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.9.1.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21 (DE3) CD+
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	SEPSECS, TRNP48
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

Molecule 2 - TRNASEC
	Chains	:	E
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PUC19
	Expression System Strain	:	DH5A
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606

		1	2	3	4	5
Asymmetric Unit	:	A	B	C	D	E
Biological Unit 1 (2x)	:	A (2x)	B (2x)			E (1x)
Biological Unit 2 (2x)	:			C (2x)	D (2x)	E (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 11)

No.	Name	Count	Type	Full Name
1	PLR	4	Ligand/Ion	(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGENPHOSPHATE
2	SEP	4	Mod. Residue	PHOSPHOSERINE
3	TS6	3	Ligand/Ion	MONOTHIOPHOSPHATE

Biological Unit 1 (0, 0)

No.	Name	Count	Type	Full Name
1	PLR	-1	Ligand/Ion	(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGENPHOSPHATE
2	SEP	-1	Mod. Residue	PHOSPHOSERINE
3	TS6	-1	Ligand/Ion	MONOTHIOPHOSPHATE

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	PLR	-1	Ligand/Ion	(5-HYDROXY-4,6-DIMETHYLPYRIDIN-3-YL)METHYL DIHYDROGENPHOSPHATE
2	SEP	-1	Mod. Residue	PHOSPHOSERINE
3	TS6	-1	Ligand/Ion	MONOTHIOPHOSPHATE

Asymmetric Unit (11, 11)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU A:74 , ARG A:75 , ALA A:143 , THR A:144 , GLY A:145 , ILE A:170 , GLN A:172 , SER A:174 , CYS A:175 , ASN A:252 , ALA A:254 , TYR A:255 , LYS A:284 , GLY A:312 , ARG A:313 , HOH A:525 , HOH A:564	BINDING SITE FOR RESIDUE PLR A 1001
02	AC2	SOFTWARE	ARG A:97 , SER A:98 , GLN A:105	BINDING SITE FOR RESIDUE TS6 A 3001
03	AC3	SOFTWARE	ARG A:199 , HIS A:368	BINDING SITE FOR RESIDUE TS6 A 3002
04	AC4	SOFTWARE	ARG B:75 , ALA B:143 , THR B:144 , GLY B:145 , ILE B:170 , GLN B:172 , SER B:174 , ASN B:252 , ALA B:254 , TYR B:255 , LYS B:284 , PRO B:311 , GLY B:312 , ARG B:313 , HOH B:570 , SEP B:2001	BINDING SITE FOR RESIDUE PLR B 1001
05	AC5	SOFTWARE	GLU B:74 , ARG B:75 , ARG B:97 , SER B:98 , GLY B:99 , GLN B:105 , GLN B:172 , LYS B:173 , PHE B:227 , LYS B:284 , ARG B:313 , HOH B:570 , PLR B:1001	BINDING SITE FOR RESIDUE SEP B 2001
06	AC6	SOFTWARE	ARG B:199 , ARG B:234 , HIS B:368	BINDING SITE FOR RESIDUE SEP B 2002
07	AC7	SOFTWARE	ARG C:75 , ALA C:143 , THR C:144 , GLY C:145 , ILE C:170 , GLN C:172 , SER C:174 , CYS C:175 , ASN C:252 , ALA C:254 , TYR C:255 , LYS C:284 , GLY C:312 , ARG C:313	BINDING SITE FOR RESIDUE PLR C 1001
08	AC8	SOFTWARE	ARG C:97 , SER C:98 , GLN C:105	BINDING SITE FOR RESIDUE TS6 C 3001
09	AC9	SOFTWARE	ARG D:75 , ALA D:143 , THR D:144 , GLY D:145 , GLN D:172 , SER D:174 , CYS D:175 , ASN D:252 , ALA D:254 , TYR D:255 , LYS D:284 , GLY D:312 , ARG D:313 , SEP D:2001	BINDING SITE FOR RESIDUE PLR D 1001
10	BC1	SOFTWARE	GLU D:74 , ARG D:75 , ARG D:97 , SER D:98 , GLY D:99 , GLN D:105 , GLN D:172 , LYS D:173 , LYS D:284 , ARG D:313 , PLR D:1001	BINDING SITE FOR RESIDUE SEP D 2001
11	BC2	SOFTWARE	ARG D:199 , ARG D:234 , HIS D:368 , HOH D:535	BINDING SITE FOR RESIDUE SEP D 2002

(no "SS Bond" information available for 3HL2)

Asymmetric Unit

No.	Residues
1	Ala A:228	-	Pro A:229
2	Ala B:228	-	Pro B:229
3	Ala C:228	-	Pro C:229
4	Ala D:228	-	Pro D:229

Asymmetric Unit (3, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_065585	A	239	T	SPCS_HUMAN	Disease (PCH2D)	267607035	A/B/C/D	A	239	T
2	UniProt	VAR_074163	T	325	S	SPCS_HUMAN	Disease (PCH2D)	---	A/B/C/D	T	325	S
3	UniProt	VAR_065586	Y	334	C	SPCS_HUMAN	Disease (PCH2D)	267607036	A/B/C/D	Y	334	C

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (3, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_065585	A	239	T	SPCS_HUMAN	Disease (PCH2D)	267607035	A/B	A	239	T
2	UniProt	VAR_074163	T	325	S	SPCS_HUMAN	Disease (PCH2D)	---	A/B	T	325	S
3	UniProt	VAR_065586	Y	334	C	SPCS_HUMAN	Disease (PCH2D)	267607036	A/B	Y	334	C

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (3, 12)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_065585	A	239	T	SPCS_HUMAN	Disease (PCH2D)	267607035	C/D	A	239	T
2	UniProt	VAR_074163	T	325	S	SPCS_HUMAN	Disease (PCH2D)	---	C/D	T	325	S
3	UniProt	VAR_065586	Y	334	C	SPCS_HUMAN	Disease (PCH2D)	267607036	C/D	Y	334	C

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 3HL2)

(no "Exon" information available for 3HL2)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:441
 aligned with SPCS_HUMAN | Q9HD40 from UniProtKB/Swiss-Prot  Length:501

    Alignment length:441
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462 
           SPCS_HUMAN    23 EARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463
               SCOP domains d3hl2a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..............hhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh..eeeee.eeee..eeeehhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh...eeeeehhhhhh.....eeeee.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeee.........hhhhhhhhhhhhh.....eee.....eee..eee.............eeeee.....hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------S--------C--------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hl2 A  23 EARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462

Chain B from PDB  Type:PROTEIN  Length:443
 aligned with SPCS_HUMAN | Q9HD40 from UniProtKB/Swiss-Prot  Length:501

    Alignment length:443
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460   
           SPCS_HUMAN    21 GCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463
               SCOP domains d3hl2b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..............hhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhh......eeeee...hhhhhhhhhhh..eeeee..eee..eee.hhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh...eeeeehhhhhh.....eeeee.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee...........hhhhhhhhhhh.....eee....eeee..eeee............eeeee.....hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------S--------C--------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hl2 B  21 GCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463
                                    30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460

Chain C from PDB  Type:PROTEIN  Length:445
 aligned with SPCS_HUMAN | Q9HD40 from UniProtKB/Swiss-Prot  Length:501

    Alignment length:445
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459     
           SPCS_HUMAN    20 QGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE 464
               SCOP domains d3hl2c_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..............hhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhh......eeeee..hhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh..eeeee..eee..eee.hhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeeeehhhhhh.....eeeee.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.............eeeee.........hhhhhhhhhhhhh.....eee.....eee..eee.............eeeee.....hhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------S--------C---------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hl2 C  20 QGCEARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKE 464
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389       399       409       419       429       439       449       459

Chain D from PDB  Type:PROTEIN  Length:441
 aligned with SPCS_HUMAN | Q9HD40 from UniProtKB/Swiss-Prot  Length:501

    Alignment length:441
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462 
           SPCS_HUMAN    23 EARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463
               SCOP domains d3hl2d_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                              SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..............hhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhh.....eeeee..hhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhhh..eeeee..eee..eee.hhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhh...eeeeehhhhh......eeeee.hhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............eeeee..........hhhhhhhhhhhh.....eee....eeee..eeee............eeeee.....hhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------S--------C--------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hl2 D  23 EARRSHEHLIRLLLEKGKCPENGWDESTLELFLHELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDIIKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEGDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRK 463
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462

Chain E from PDB  Type:RNA  Length:82
                                                                                                                  
                 3hl2 E   1 GCCCGGAUGAUCCUCAGUGGUCUGGGGUGCAGGCCUGUAGCUGUCUAGCGACAGAGUGGUUCAAUUCCACCUUUCGGGCGCC  75
                                |||  8       |19 |      28  ||    45|||||||46J||      54        64  ||    73  
                               5A||         16|  |         31|    46A||||||46J||                  67A|        
                                5B|          18  |          39     46B||||||46K|                   67B        
                                 5C            20A                  46C||||||46L                              
                                                                     46D|||||                                 
                                                                      46E||||                                 
                                                                       46F|||                                 
                                                                        46G||                                 
                                                                         46H|                                 
                                                                          46I

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: PLP-dependent transferase-like (627)

Superfamily: PLP-dependent transferases (625)

Family: SepSecS-like (7)

Protein domain: automated matches (1)

Human (Homo sapiens) [TaxId: 9606] (1)

1a	d3hl2a_	A:
1b	d3hl2b_	B:
1c	d3hl2c_	C:
1d	d3hl2d_	D:

(no "CATH Domain" information available for 3HL2)

(no "Pfam Domain" information available for 3HL2)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (SPCS_HUMAN | Q9HD40)

molecular function
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0098621	phosphoseryl-selenocysteinyl-tRNA selenium transferase activity	Catalysis of the reaction: O-Phosphoseryl-tRNA(Sec) + Selenophosphoric acid + H2O => L-Selenocysteinyl-tRNA(Sec) + 2 phosphoric acid.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0000049	tRNA binding	Interacting selectively and non-covalently with transfer RNA.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016785	transferase activity, transferring selenium-containing groups	Catalysis of the transfer of a selenium-containing group from one compound (donor) to another (acceptor).
biological process
	GO:0001514	selenocysteine incorporation	The incorporation of selenocysteine into a peptide; uses a special tRNA that recognizes the UGA codon as selenocysteine, rather than as a termination codon. Selenocysteine is synthesized from serine before its incorporation; it is not a posttranslational modification of peptidyl-cysteine.
	GO:0016259	selenocysteine metabolic process	The chemical reactions and pathways involving selenocysteine, an essential component of glutathione peroxidase and some other proteins.
	GO:0097056	selenocysteinyl-tRNA(Sec) biosynthetic process	The chemical reactions and pathways resulting in the formation of selenocysteinyl-tRNA(Sec). This process occurs through the following steps: a unique serine-tRNA with a UGA recognizing anticodon is first aminoacylated with serine; this is then phosphorylated by phosphoseryl-tRNA[Ser]Sec kinase; lastly, selenium is swapped for the phosphate on the serine.
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	3hl2
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(no "Related Entries Specified in the PDB File" available for 3HL2)

Description

Compounds

Structural Features

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Ligands, Modified Residues, Ions (3, 11)

Sites (11, 11)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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