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(-) Description

Title :  MURINE UNGLYCOSYLATED IGG FC FRAGMENT
 
Authors :  M. J. Feige, S. Nath, S. R. Catharino, D. Weinfurtner, S. Steinbacher, J. Buchner
Date :  23 May 09  (Deposition) - 10 Nov 09  (Release) - 10 Nov 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Antibody, Glycosylation, Stability, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. Feige, S. Nath, S. R. Catharino, D. Weinfurtner, S. Steinbacher, J. Buchner
Structure Of The Murine Unglycosylated Igg1 Fc Fragment
J. Mol. Biol. V. 391 599 2009
PubMed-ID: 19559712  |  Reference-DOI: 10.1016/J.JMB.2009.06.048
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - IGH PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 252-463
    Gene: IGH-4, IGH
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:286 , GLU A:297 , GLN A:416BINDING SITE FOR RESIDUE MG A 1

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:264 -A:324
2A:370 -A:428

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Phe A:376 -Pro A:377

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HKF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HKF)

(-) Exons   (0, 0)

(no "Exon" information available for 3HKF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:205
 aligned with Q99LC4_MOUSE | Q99LC4 from UniProtKB/TrEMBL  Length:463

    Alignment length:205
                                   263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433       443       453     
         Q99LC4_MOUSE   254 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFIYSKLNVQKSNWEAGNTFTCSVLHEGLHNHHTEKSLS 458
               SCOP domains d3hkfa1 A:241-344 automated matches                                                                     d3hkfa2 A:345-445 automated matches                                                                   SCOP domains
               CATH domains 3hkfA01 A:241-340 Immunoglobulins                                                                   3hkfA02 A:341-445 Immunoglobulins                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee..hhhhhhh.....eeeeeeeee..........eee...ee...ee...ee.....eeeeeeee.hhhhhhh...eeeee........eeeee..........eeeee..hhhhh....eeeeeeeeee.....eeeeee.......eee...ee.....eeeeeeeee.hhhhh....eeeeee...hhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hkf A 241 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLHNHHTEKSLS 445
                                   250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HKF)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 3HKF)

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  3hkf
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q99LC4_MOUSE | Q99LC4: 1afv
UniProtKB/TrEMBL
        Q99LC4_MOUSE | Q99LC4: 1ae6 1e6j 1f58 1gig 1jhk 1jnl 1jnn 2a1w 2ntf 2vir 2vis 2vit 4q0x

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 3HKF)