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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE NITROREDUCTASE (REUT_A1228) FROM RALSTONIA EUTROPHA JMP134 AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  21 May 09  (Deposition) - 16 Jun 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Oxidoreductase (Yp_295443. 1) From Ralstonia Eutropha Jmp134 At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - OXIDOREDUCTASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: REUT_A1228, YP_295443.1
    Organism Scientific: RALSTONIA EUTROPHA
    Organism Taxid: 264198
    Strain: JMP134

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 21)

Asymmetric/Biological Unit (5, 21)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE
3MG1Ligand/IonMAGNESIUM ION
4MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
5MSE16Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:48 , LYS A:49 , SER A:50 , ARG A:52 , ASP A:129 , VAL A:131 , VAL A:183 , ARG A:184 , GLY A:185 , TRP A:186 , ACT A:223 , HOH A:236 , HOH A:247 , HOH A:248 , HOH A:254 , HOH A:356 , ARG B:76 , PRO B:85 , SER B:86 , GLY B:89 , PHE B:158 , ALA B:161BINDING SITE FOR RESIDUE FMN A 300
2AC2SOFTWARETYR A:9 , FMN A:300 , HOH A:356 , TYR B:88 , PHE B:158BINDING SITE FOR RESIDUE ACT A 223
3AC3SOFTWARELEU A:7 , ARG A:26 , ARG A:105 , LEU A:115 , LYS A:116 , HOH A:290BINDING SITE FOR RESIDUE MPD A 224
4AC4SOFTWAREARG A:76 , PRO A:85 , SER A:86 , PRO A:87 , GLY A:89 , TYR B:9 , ARG B:48 , LYS B:49 , SER B:50 , ARG B:52 , ASP B:129 , VAL B:131 , VAL B:182 , VAL B:183 , ARG B:184 , GLY B:185 , TRP B:186 , HOH B:244 , HOH B:251 , HOH B:253 , HOH B:316BINDING SITE FOR RESIDUE FMN B 300
5AC5SOFTWAREHOH B:226 , HOH B:228 , HOH B:229 , HOH B:235 , HOH B:239 , HOH B:240BINDING SITE FOR RESIDUE MG B 223

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HJ9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 3HJ9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HJ9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HJ9)

(-) Exons   (0, 0)

(no "Exon" information available for 3HJ9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:215
 aligned with Q472T4_CUPNJ | Q472T4 from UniProtKB/TrEMBL  Length:222

    Alignment length:215
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211     
         Q472T4_CUPNJ     2 NDLKRLPYEPVKGLLPRPAVGTSERVITLPEPDRTSGMPLMGTLWLRKSTREFDQQPLPLKQLSELLWAAAGVNRSLGGGRTAPSPYGETVIDVYVALPAGLYRYDPVHHCLELKRAADLRSMTGYQDFVGMAPLDLVFVANHGRMQEMPPKLRETFSAAAAGAMAENAYLYCASAGLGAVVRGWLNRRQLAEHMSLNEDEEPILSQTIGRAASH 216
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh..ee......ee.......eee..........hhhhhhhhh...........hhhhhhhhhhhhhheeehhhhee...hhhhh..eeeeeee..eeeeee....eeeeee.ee......ee.......eeeeeeee.hhh...hhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhh.....eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hj9 A   2 NDLKRLPYEPVKGLLPRPAVGTSERVITLPEPDRTSGmPLmGTLWLRKSTREFDQQPLPLKQLSELLWAAAGVNRSLGGGRTAPSPYGETVIDVYVALPAGLYRYDPVHHCLELKRAADLRSmTGYQDFVGmAPLDLVFVANHGRmQEmPPKLRETFSAAAAGAmAENAYLYCASAGLGAVVRGWLNRRQLAEHmSLNEDEEPILSQTIGRAASH 216
                                    11        21        31       |41|       51        61        71        81        91       101       111       121  |    131 |     141     | 151       161    |  171       181       191    |  201       211     
                                                                39-MSE                                                                              124-MSE  133-MSE       147-MSE            166-MSE                       196-MSE                
                                                                   42-MSE                                                                                                     150-MSE                                                              


Chain B from PDB  Type:PROTEIN  Length:210
 aligned with Q472T4_CUPNJ | Q472T4 from UniProtKB/TrEMBL  Length:222

    Alignment length:210
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216
         Q472T4_CUPNJ     7 LPYEPVKGLLPRPAVGTSERVITLPEPDRTSGMPLMGTLWLRKSTREFDQQPLPLKQLSELLWAAAGVNRSLGGGRTAPSPYGETVIDVYVALPAGLYRYDPVHHCLELKRAADLRSMTGYQDFVGMAPLDLVFVANHGRMQEMPPKLRETFSAAAAGAMAENAYLYCASAGLGAVVRGWLNRRQLAEHMSLNEDEEPILSQTIGRAASH 216
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...ee......ee.......eee..........hhhhhhhhh...........hhhhhhhhhhhhhheee....ee...hhhhh..eeeeeee..eeeeee....eeeeee.ee......ee.......eeeeeeee.hhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee...hhhhhhhhh.....eeeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 3hj9 B   7 LPYEPVKGLLPRPAVGTSERVITLPEPDRTSGmPLmGTLWLRKSTREFDQQPLPLKQLSELLWAAAGVNRSLGGGRTAPSPYGETVIDVYVALPAGLYRYDPVHHCLELKRAADLRSmTGYQDFVGmAPLDLVFVANHGRmQEmPPKLRETFSAAAAGAmAENAYLYCASAGLGAVVRGWLNRRQLAEHmSLNEDEEPILSQTIGRAASH 216
                                    16        26        36  |  |  46        56        66        76        86        96       106       116       126      |136       146|  |   156       166       176       186       196       206       216
                                                           39-MSE                                                                              124-MSE  133-MSE       147-MSE            166-MSE                       196-MSE                
                                                              42-MSE                                                                                                     150-MSE
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 3HJ9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 3HJ9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HJ9)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (Q472T4_CUPNJ | Q472T4)
molecular function
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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