3HIP - JenaLib

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Title :   HIGH-POTENTIAL IRON-SULFUR PROTEIN FROM CHROMATIUM PURPURATUM

Authors :   C. A. Kerfeld, A. E. Salmeen, T. O. Yeates

Date :   15 Jun 98 (Deposition) - 11 Nov 98 (Release) - 24 Mar 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (2x)
Biol. Unit 2: B,C  (1x)

Keywords :   Electron Transfer, Photosynthesis, Metalloprotein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. A. Kerfeld, A. E. Salmeen, T. O. Yeates
Crystal Structure And Possible Dimerization Of The High-Potential Iron-Sulfur Protein From Chromatium Purpuratum.
Biochemistry V. 37 13911 1998
PubMed-ID: 9760225 | Reference-DOI: 10.1021/BI9810252
(for further references see the PDB file header)

Molecule 1 - HIGH-POTENTIAL IRON-SULFUR PROTEIN
	Atcc	:	ATCC 700430
	Cellular Location	:	PERIPLASM
	Chains	:	A, B, C
	Collection	:	ATCC 700430
	Organism Scientific	:	MARICHROMATIUM PURPURATUM
	Organism Taxid	:	37487
	Synonym	:	HIPIP

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A
Biological Unit 2 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 3)

No.	Name	Count	Type	Full Name
1	SF4	3	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 1 (1, 2)

No.	Name	Count	Type	Full Name
1	SF4	2	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	SF4	2	Ligand/Ion	IRON/SULFUR CLUSTER

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:119 , CYS A:143 , CYS A:146 , PHE A:148 , CYS A:161 , PHE A:164 , ILE A:169 , CYS A:175	BINDING SITE FOR RESIDUE SF4 A 190
2	AC2	SOFTWARE	TYR B:119 , CYS B:143 , CYS B:146 , PHE B:148 , CYS B:161 , PHE B:164 , ILE B:169 , CYS B:175	BINDING SITE FOR RESIDUE SF4 B 190
3	AC3	SOFTWARE	TYR C:119 , CYS C:143 , CYS C:146 , PHE C:148 , CYS C:161 , PHE C:164 , ILE C:169 , CYS C:175	BINDING SITE FOR RESIDUE SF4 C 190

(no "SS Bond" information available for 3HIP)

(no "Cis Peptide Bond" information available for 3HIP)

(no "SAP(SNP)/Variant" information available for 3HIP)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HIPIP	PS51373	High potential iron-sulfur proteins family profile.	HIP_MARPU	1-82	3	A:102-183 B:102-181 C:102-183

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HIPIP	PS51373	High potential iron-sulfur proteins family profile.	HIP_MARPU	1-82	2	A:102-183 - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	HIPIP	PS51373	High potential iron-sulfur proteins family profile.	HIP_MARPU	1-82	2	- B:102-181 C:102-183

(no "Exon" information available for 3HIP)

Asymmetric Unit

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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:82
 aligned with HIP_MARPU | P59860 from UniProtKB/Swiss-Prot  Length:82

    Alignment length:82
                                    10        20        30        40        50        60        70        80  
            HIP_MARPU     1 VPANAVTESDPAAVALKYHRDAASSERVAAARPGLPPEEQHCENCQFMNPDSAAADWKGCQLFPGKLINLSGWCASWTLRAG  82
               SCOP domains d3hipa_ A: HIPIP (high potential iron protein)                                     SCOP domains
               CATH domains 3hipA00 A:102-183 High-Potential Iron-Sulfur Protein, subunit A                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh.....hhh..hhhh......hhh..hhh...eeeeeee..eeee......eee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HIPIP  PDB: A:102-183 UniProt: 1-82                                                PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                 3hip A 102 VPANAVTESDPAAVALKYHRDAASSERVAAARPGLPPEEQHCENCQFMNPDSAAADWKGCQLFPGKLINLSGWCASWTLRAG 183
                                   111       121       131       141       151       161       171       181

Chain B from PDB  Type:PROTEIN  Length:80
 aligned with HIP_MARPU | P59860 from UniProtKB/Swiss-Prot  Length:82

    Alignment length:80
                                    10        20        30        40        50        60        70        80
            HIP_MARPU     1 VPANAVTESDPAAVALKYHRDAASSERVAAARPGLPPEEQHCENCQFMNPDSAAADWKGCQLFPGKLINLSGWCASWTLR  80
               SCOP domains d3hipb_ B: HIPIP (high potential iron protein)                                   SCOP domains
               CATH domains 3hipB00 B:102-181 High-Potential Iron-Sulfur Protein, subunit A                  CATH domains
               Pfam domains -------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh.....hhh..hhhh......hhh..hhh...eeeeeee..eeee......eee........... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HIPIP  PDB: B:102-181 UniProt: 1-82                                              PROSITE
                 Transcript -------------------------------------------------------------------------------- Transcript
                 3hip B 102 VPANAVTESDPAAVALKYHRDAASSERVAAARPGLPPEEQHCENCQFMNPDSAAADWKGCQLFPGKLINLSGWCASWTLR 181
                                   111       121       131       141       151       161       171       181

Chain C from PDB  Type:PROTEIN  Length:82
 aligned with HIP_MARPU | P59860 from UniProtKB/Swiss-Prot  Length:82

    Alignment length:82
                                    10        20        30        40        50        60        70        80  
            HIP_MARPU     1 VPANAVTESDPAAVALKYHRDAASSERVAAARPGLPPEEQHCENCQFMNPDSAAADWKGCQLFPGKLINLSGWCASWTLRAG  82
               SCOP domains d3hipc_ C: HIPIP (high potential iron protein)                                     SCOP domains
               CATH domains 3hipC00 C:102-183 High-Potential Iron-Sulfur Protein, subunit A                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh.....hhh..hhhh......hhh..hhh...eeeeeee..eeee......eee............. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE HIPIP  PDB: C:102-183 UniProt: 1-82                                                PROSITE
                 Transcript ---------------------------------------------------------------------------------- Transcript
                 3hip C 102 VPANAVTESDPAAVALKYHRDAASSERVAAARPGLPPEEQHCENCQFMNPDSAAADWKGCQLFPGKLINLSGWCASWTLRAG 183
                                   111       121       131       141       151       161       171       181

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

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Families(

)

Protein Domains( (-)

)

Organisms( (-)

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Class: Small proteins (3458)

Fold: HIPIP (high potential iron protein) (22)

Superfamily: HIPIP (high potential iron protein) (22)

Family: HIPIP (high potential iron protein) (22)

Protein domain: HIPIP (high potential iron protein) (22)

Chromatium purpuratum [TaxId: 37487] (1)

1a	d3hipa_	A:
1b	d3hipb_	B:
1c	d3hipc_	C:

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Few Secondary Structures (1120)

Architecture: Irregular (1120)

Topology: High-Potential Iron-Sulfur Protein; Chain A (21)

Homologous Superfamily: High-Potential Iron-Sulfur Protein, subunit A (21)

Marichromatium purpuratum. Organism_taxid: 37487. (1)

1a	3hipB00	B:102-181
1b	3hipA00	A:102-183
1c	3hipC00	C:102-183

(no "Pfam Domain" information available for 3HIP)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (HIP_MARPU | P59860)

molecular function
	GO:0051539	4 iron, 4 sulfur cluster binding	Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0019646	aerobic electron transport chain	A process in which a series of electron carriers operate together to transfer electrons from donors such as NADH and FADH2 to oxygen to generate a transmembrane electrochemical gradient.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

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