3HIG - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN DIAMINE OXIDASE IN COMPLEX WITH THE INHIBITOR BERENIL

Authors :   A. P. Mcgrath, J. M. Guss

Date :   19 May 09 (Deposition) - 20 Oct 09 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.09

Chains :   Asym./Biol. Unit : A,B

Keywords :   Oxidoreductase, Copper Amine Oxidase, Topaquinone, Tpq, Diamine Oxidase, Dao, Human, Berenil, Diminazene, Glycoprotein, Heparin- Binding, Metal-Binding, Secreted (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. P. Mcgrath, K. M. Hilmer, C. A. Collyer, E. M. Shepard, B. O. Elmore, D. E. Brown, D. M. Dooley, J. M. Guss
Structure And Inhibition Of Human Diamine Oxidase
Biochemistry V. 48 9810 2009
PubMed-ID: 19764817 | Reference-DOI: 10.1021/BI9014192

Molecule 1 - AMILORIDE-SENSITIVE AMINE OXIDASE
	Chains	:	A, B
	EC Number	:	1.4.3.22
	Engineered	:	YES
	Expression System	:	DROSOPHILA MELANOGASTER
	Expression System Cell Line	:	SCHNEIDER 2
	Expression System Taxid	:	7227
	Gene	:	ABP1
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	DIAMINE OXIDASE, DAO, AMILORIDE-BINDING PROTEIN, ABP, HISTAMINASE, KIDNEY AMINE OXIDASE, KAO

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (7, 24)

No.	Name	Count	Type	Full Name
1	BMA	1	Ligand/Ion	BETA-D-MANNOSE
2	BRN	2	Ligand/Ion	BERENIL
3	CA	4	Ligand/Ion	CALCIUM ION
4	CU	2	Ligand/Ion	COPPER (II) ION
5	GOL	1	Ligand/Ion	GLYCEROL
6	NAG	12	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
7	TPQ	2	Mod. Amino Acid	5-(2-CARBOXY-2-AMINOETHYL)-2-HYDROXY-1,4-BENZOQUINONE

Asymmetric Unit (22, 22)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TPQ A:461 , HIS A:510 , HIS A:512 , HIS A:675	BINDING SITE FOR RESIDUE CU A 801
02	AC2	SOFTWARE	HOH A:20 , LYS A:79 , ASP A:519 , LEU A:520 , ASP A:521 , ASP A:664 , LEU A:665	BINDING SITE FOR RESIDUE CA A 802
03	AC3	SOFTWARE	GLU A:562 , PHE A:653 , ASN A:656 , GLU A:658 , HOH A:754 , HOH A:819	BINDING SITE FOR RESIDUE CA A 803
04	AC4	SOFTWARE	GLU A:313 , GLY A:314 , TRP A:561 , ASN A:657 , HOH A:934 , HOH A:950 , HOH A:1066 , HOH A:1152	BINDING SITE FOR RESIDUE GOL A 804
05	AC5	SOFTWARE	TYR A:148 , PHE A:184 , ASP A:186 , TYR A:371 , ASP A:373 , TRP A:376 , VAL A:458 , TYR A:459 , HOH A:892 , HOH A:897 , HOH A:933 , PHE B:435	BINDING SITE FOR RESIDUE BRN A 901
06	AC6	SOFTWARE	GLN A:106 , ASN A:110 , THR A:112 , NAG A:1102	BINDING SITE FOR RESIDUE NAG A 1101
07	AC7	SOFTWARE	LEU A:54 , ARG A:719 , HOH A:924 , HOH A:946 , NAG A:1101 , BMA A:1103	BINDING SITE FOR RESIDUE NAG A 1102
08	AC8	SOFTWARE	ARG A:719 , HOH A:838 , NAG A:1102	BINDING SITE FOR RESIDUE BMA A 1103
09	AC9	SOFTWARE	ASN A:538 , ARG A:548 , NAG A:5382 , TRP B:609	BINDING SITE FOR RESIDUE NAG A 5381
10	BC1	SOFTWARE	NAG A:5381	BINDING SITE FOR RESIDUE NAG A 5382
11	BC2	SOFTWARE	ASN A:745 , HOH A:840 , NAG A:7452 , ASN B:724 , HOH B:1067	BINDING SITE FOR RESIDUE NAG A 7451
12	BC3	SOFTWARE	NAG A:7451	BINDING SITE FOR RESIDUE NAG A 7452
13	BC4	SOFTWARE	TPQ B:461 , HIS B:510 , HIS B:512 , HIS B:675	BINDING SITE FOR RESIDUE CU B 801
14	BC5	SOFTWARE	ASP B:519 , LEU B:520 , ASP B:521 , ASP B:664 , LEU B:665 , HOH B:903	BINDING SITE FOR RESIDUE CA B 802
15	BC6	SOFTWARE	HOH B:5 , GLU B:562 , PHE B:653 , ASN B:656 , GLU B:658 , HOH B:888	BINDING SITE FOR RESIDUE CA B 803
16	BC7	SOFTWARE	PHE A:435 , TYR B:148 , PHE B:184 , ASP B:186 , TYR B:371 , ASP B:373 , TRP B:376 , VAL B:458 , TYR B:459 , ASN B:460 , HOH B:1227	BINDING SITE FOR RESIDUE BRN B 901
17	BC8	SOFTWARE	GLN B:106 , ASN B:110 , THR B:112 , GLU B:257 , NAG B:1102	BINDING SITE FOR RESIDUE NAG B 1101
18	BC9	SOFTWARE	LEU B:54 , NAG B:1101	BINDING SITE FOR RESIDUE NAG B 1102
19	CC1	SOFTWARE	TRP A:609 , ASN B:538 , ARG B:548 , HOH B:799 , NAG B:5382	BINDING SITE FOR RESIDUE NAG B 5381
20	CC2	SOFTWARE	HOH B:799 , HOH B:944 , NAG B:5381	BINDING SITE FOR RESIDUE NAG B 5382
21	CC3	SOFTWARE	ASN A:724 , ASN B:745 , HOH B:1057 , HOH B:1138 , NAG B:7452	BINDING SITE FOR RESIDUE NAG B 7451
22	CC4	SOFTWARE	NAG B:7451	BINDING SITE FOR RESIDUE NAG B 7452

Asymmetric/Biological Unit

No.	Residues
1	A:177	-	A:181
2	A:391	-	A:417
3	A:736	-	B:736
4	B:177	-	B:181
5	B:391	-	B:417

Asymmetric/Biological Unit

No.	Residues
1	Gly A:117	-	Pro A:118
2	Leu A:119	-	Pro A:120
3	Ala A:188	-	Pro A:189
4	Ile A:682	-	Pro A:683
5	Gly B:117	-	Pro B:118
6	Leu B:119	-	Pro B:120
7	Ala B:188	-	Pro B:189
8	Ile B:682	-	Pro B:683

Asymmetric/Biological Unit (4, 8)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_025079	S	332	F	AOC1_HUMAN	Polymorphism	1049742	A/B	S	332	F
2	UniProt	VAR_025080	M	479	I	AOC1_HUMAN	Polymorphism	45558339	A/B	M	479	I
3	UniProt	VAR_007542	H	645	D	AOC1_HUMAN	Polymorphism	1049793	A/B	D	645	D
4	UniProt	VAR_025081	N	659	H	AOC1_HUMAN	Polymorphism	35070995	A/B	N	659	H

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	COPPER_AMINE_OXID_1	PS01164	Copper amine oxidase topaquinone signature.	AOC1_HUMAN	450-463	2	A:450-463 B:450-463
2	COPPER_AMINE_OXID_2	PS01165	Copper amine oxidase copper-binding site signature.	AOC1_HUMAN	670-683	2	A:670-683 B:670-683

(no "Exon" information available for 3HIG)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:715
 aligned with AOC1_HUMAN | P19801 from UniProtKB/Swiss-Prot  Length:751

    Alignment length:725
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746     
           AOC1_HUMAN    27 PRKAGVFSDLSNQELKAVHSFLWSKKELRLQPSSTTTMAKNTVFLIEMLLPKKYHVLRFLDKGERHPVREARAVIFFGDQEHPNVTEFAVGPLPGPCYMRALSPRPGYQSSWASRPISTAEYALLYHTLQEATKPLHQFFLNTTGFSFQDCHDRCLAFTDVAPRGVASGQRRSWLIIQRYVEGYFLHPTGLELLVDHGSTDAGHWAVEQVWYNGKFYGSPEELARKYADGEVDVVVLEDPLPGGKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNAVLYGGWSFAFRLRSSSGLQVLNVHFGGERIAYEVSVQEAVALYGGHTPAGMQTKYLDVGWGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHYPRALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNYDYIWDFIFYPNGVMEAKMHATGYVHATFYTPEGLRHGTRLHTHLIGNIHTHLVHYRVDLDVAGTKNSFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSPQENPWGHKRTYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQNDPWHPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSLASRDTVIVWPRDNGPNYVQRWIPEDRDCSMPPPFSYNGTYRPV 751
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3higA01 A:27-137  [code=3.10.450.40, no name defined]                                                          ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------3higA03 A:309-720 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                            ------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh..hhhhhhhhhhhhhhhhhhh...........eeeeeeeee..hhhhhhhhhhhh......eeeeeeee......eeeeeeee......eeeee.......hhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhh..........eeeee...........eeeeeeee...hhhh.eeeeeeeee....hhhhheeeeeee..ee..hhhhhhhhhhh............----------.......................eee.......eee..eeee..eeeeeeee...eeeeeeeee..eeeeeeeeeeeeeeee...hhhhhhheee.hhhh..................eeeeeeeee.....eeeeeeeeeeeee.....eeeeee.....eeeeeee..eeeeeeeee....eeeeeeeee.....eeeeeeeee...eee.hhhhhh.eeeee..eeee.eeeeeeeeeee.....eeeeeeeeeeeeeee.......eeeeeeeeeee..hhhhhh.........eeeeeeeee.....eeeeeeeee..........hhhhhhhhhhhh.eeeee.hhhhh..................hhhhhh......eeeeeeeeeeeee..hhhhh........eeeeeeeee.....hhhhhh...eeee.......eeee....................... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F--------------------------------------------------------------------------------------------------------------------------------------------------I---------------------------------------------------------------------------------------------------------------------------------------------------------------------D-------------H-------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O-------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hig A  27 PRKAGVFSDLSNQELKAVHSFLWSKKELRLQPSSTTTMAKNTVFLIEMLLPKKYHVLRFLDKGERHPVREARAVIFFGDQEHPNVTEFAVGPLPGPCYMRALSPRPGYQSSWASRPISTAEYALLYHTLQEATKPLHQFFLNTTGFSFQDCHDRCLAFTDVAPRGVASGQRRSWLIIQRYVEGYFLHPTGLELLVDHGSTDAGHWAVEQVWYNGKFYGSPEELARKYADGEVDVVVLEDPL----------EPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNAVLYGGWSFAFRLRSSSGLQVLNVHFGGERIAYEVSVQEAVALYGGHTPAGMQTKYLDVGWGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHYPRALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNyDYIWDFIFYPNGVMEAKMHATGYVHATFYTPEGLRHGTRLHTHLIGNIHTHLVHYRVDLDVAGTKNSFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSPQENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQNDPWDPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSLASRDTVIVWPRDNGPNYVQRWIPEDRDCSMPPPFSYNGTYRPV 751
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266|        - |     286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456    |  466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746     
                                                                                                                                                                                                                                                                          267        278                                                                                                                                                                                    461-TPQ

Chain B from PDB  Type:PROTEIN  Length:710
 aligned with AOC1_HUMAN | P19801 from UniProtKB/Swiss-Prot  Length:751

    Alignment length:724
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457       467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747    
           AOC1_HUMAN    28 RKAGVFSDLSNQELKAVHSFLWSKKELRLQPSSTTTMAKNTVFLIEMLLPKKYHVLRFLDKGERHPVREARAVIFFGDQEHPNVTEFAVGPLPGPCYMRALSPRPGYQSSWASRPISTAEYALLYHTLQEATKPLHQFFLNTTGFSFQDCHDRCLAFTDVAPRGVASGQRRSWLIIQRYVEGYFLHPTGLELLVDHGSTDAGHWAVEQVWYNGKFYGSPEELARKYADGEVDVVVLEDPLPGGKGHDSTEEPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNAVLYGGWSFAFRLRSSSGLQVLNVHFGGERIAYEVSVQEAVALYGGHTPAGMQTKYLDVGWGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHYPRALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNYDYIWDFIFYPNGVMEAKMHATGYVHATFYTPEGLRHGTRLHTHLIGNIHTHLVHYRVDLDVAGTKNSFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSPQENPWGHKRTYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQNDPWHPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSLASRDTVIVWPRDNGPNYVQRWIPEDRDCSMPPPFSYNGTYRPV 751
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 3higB01 B:28-137  [code=3.10.450.40, no name defined]                                                         ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------3higB03 B:309-720 Copper amine oxidase, Domain 3                                                                                                                                                                                                                                                                                                                                                                            ------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhh..hhhhhhhhhhhhhhhhhhh...........eeeeeeeee..hhhhhhhhhhh.......eeeeeeee......eeeeeeee......eeee................hhhhhhhhhhhhhhhh..hhhhhhhhhh..........eeeee...........eeeeeeee...hhhh.eeeeeeeee....hhhhheeeeeee..ee..hhhhhhhhhhh........--------------.......................eee.......eee..eeee..eeeeeeee...eeeeeeeee..eeeeeeeeeeeeeeee...hhhhhhheee.hhhhhhhh..............eeeeeeeee.....eeeeeeeeeeeee.....eeeeee.....eeeeeee..eeeeeeeeee...eeeeeeeee.....eeeeeeeee...eee.hhhhhh.eeeee..eeee.eeeeeeeeeee.....eeeeeeeeeeeeeee.......eeeeeeeeeee..hhhhhh.........eeeeeeeee.....eeeeeeeee..........hhhhhhhhhhhh.eeeee......................hhhhhhh.......eeeeeeeeeeeee..hhhhh........eeeeeeeee.....hhhhhh...eeee.......eee........................ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------F--------------------------------------------------------------------------------------------------------------------------------------------------I---------------------------------------------------------------------------------------------------------------------------------------------------------------------D-------------H-------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------COPPER_AMINE_O-------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hig B  28 RKAGVFSDLSNQELKAVHSFLWSKKELRLQPSSTTTMAKNTVFLIEMLLPKKYHVLRFLDKGERHPVREARAVIFFGDQEHPNVTEFAVGPLPGPCYMRALSPRPGYQSSWASRPISTAEYALLYHTLQEATKPLHQFFLNTTGFSFQDCHDRCLAFTDVAPRGVASGQRRSWLIIQRYVEGYFLHPTGLELLVDHGSTDAGHWAVEQVWYNGKFYGSPEELARKYADGEVDVVVL--------------EPPLFSSHKPRGDFPSPIHVSGPRLVQPHGPRFRLEGNAVLYGGWSFAFRLRSSSGLQVLNVHFGGERIAYEVSVQEAVALYGGHTPAGMQTKYLDVGWGLGSVTHELAPGIDCPETATFLDTFHYYDADDPVHYPRALCLFEMPTGVPLRRHFNSNFKGGFNFYAGLKGQVLVLRTTSTVYNyDYIWDFIFYPNGVMEAKMHATGYVHATFYTPEGLRHGTRLHTHLIGNIHTHLVHYRVDLDVAGTKNSFQTLQMKLENITNPWSPRHRVVQPTLEQTQYSWERQAAFRFKRKLPKYLLFTSPQENPWGHKRSYRLQIHSMADQVLPPGWQEEQAITWARYPLAVTKYRESELCSSSIYHQNDPWDPPVVFEQFLHNNENIENEDLVAWVTVGFLHIPHSEDIPNTATPGNSVGFLLRPFNFFPEDPSLASRDTVIVWPRDNGPNYVQRWIPEDRDCSMPPPFSYNGTYRPV 751
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257     |   -         -|      287       297       307       317       327       337       347       357       367       377       387       397       407       417       427       437       447       457   |   467       477       487       497       507       517       527       537       547       557       567       577       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747    
                                                                                                                                                                                                                                                                     263            278                                                                                                                                                                                    461-TPQ

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 3HIG)

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Roll (3276)

Topology: Nuclear Transport Factor 2; Chain: A, (517)

Homologous Superfamily: [code=3.10.450.40, no name defined] (77)

Human (Homo sapiens) (8)

1a	3higB01	B:28-137
1b	3higA01	A:27-137

Class: Mainly Beta (13760)

Architecture: Distorted Sandwich (506)

Topology: Beta-galactosidase; Chain A, domain 5 (250)

Homologous Superfamily: Copper amine oxidase, Domain 3 (74)

Human (Homo sapiens) (8)

2a	3higA03	A:309-720
2b	3higB03	B:309-720

(no "Pfam Domain" information available for 3HIG)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (AOC1_HUMAN | P19801)

molecular function
	GO:0005509	calcium ion binding	Interacting selectively and non-covalently with calcium ions (Ca2+).
	GO:0005507	copper ion binding	Interacting selectively and non-covalently with copper (Cu) ions.
	GO:0052597	diamine oxidase activity	Catalysis of the reaction: a diamine + H2O + O2 = a monoamine + NH3 + hydrogen peroxide.
	GO:0008144	drug binding	Interacting selectively and non-covalently with a drug, any naturally occurring or synthetic substance, other than a nutrient, that, when administered or applied to an organism, affects the structure or functioning of the organism; in particular, any such substance used in the diagnosis, prevention, or treatment of disease.
	GO:0008201	heparin binding	Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
	GO:0052598	histamine oxidase activity	Catalysis of the reaction: histamine + H2O + O2 = imidazole-4-acetaldehyde + NH3 + hydrogen peroxide + H+.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0052599	methylputrescine oxidase activity	Catalysis of the reaction: N-methylputrescine + H2O + O2 = N-methylaminobutanal + NH3 + hydrogen peroxide + H+.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0008131	primary amine oxidase activity	Catalysis of the reaction: a primary amine + H2O + O2 = an aldehyde + NH3 + hydrogen peroxide.
	GO:0052600	propane-1,3-diamine oxidase activity	Catalysis of the reaction: propane-1,3-diamine + H2O + O2 = 3-aminopropanal + NH3 + hydrogen peroxide + H+.
	GO:0032403	protein complex binding	Interacting selectively and non-covalently with any protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0048038	quinone binding	Interacting selectively and non-covalently with a quinone, any member of a class of diketones derivable from aromatic compounds by conversion of two CH groups into CO groups with any necessary rearrangement of double bonds.
	GO:0004872	receptor activity	Combining with an extracellular or intracellular messenger to initiate a change in cell activity.
	GO:0008270	zinc ion binding	Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
	GO:0009308	amine metabolic process	The chemical reactions and pathways involving any organic compound that is weakly basic in character and contains an amino or a substituted amino group. Amines are called primary, secondary, or tertiary according to whether one, two, or three carbon atoms are attached to the nitrogen atom.
	GO:0097185	cellular response to azide	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an azide stimulus.
	GO:0071280	cellular response to copper ion	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a copper ion stimulus.
	GO:0035874	cellular response to copper ion starvation	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of copper ions.
	GO:0071504	cellular response to heparin	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heparin stimulus.
	GO:0071420	cellular response to histamine	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a histamine stimulus. Histamine, the biogenic amine 2-(1H-imidazol-4-yl)ethanamine, is involved in local immune responses as well as regulating physiological function in the gut and acting as a neurotransmitter.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0046677	response to antibiotic	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
	GO:0042493	response to drug	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0006805	xenobiotic metabolic process	The chemical reactions and pathways involving a xenobiotic compound, a compound foreign to living organisms. Used of chemical compounds, e.g. a xenobiotic chemical, such as a pesticide.
cellular component
	GO:0005923	bicellular tight junction	An occluding cell-cell junction that is composed of a branching network of sealing strands that completely encircles the apical end of each cell in an epithelial sheet; the outer leaflets of the two interacting plasma membranes are seen to be tightly apposed where sealing strands are present. Each sealing strand is composed of a long row of transmembrane adhesion proteins embedded in each of the two interacting plasma membranes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005576	extracellular region	The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
	GO:0005615	extracellular space	That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
	GO:0005777	peroxisome	A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

Asymmetric/Biological Unit
	Complete Structure
		Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
		WebMol \| AstexViewer[tm]@PDBe (Java Applets, require no local installation except for Java; loading may be slow)
		STRAP (Java WebStart application, automatic local installation, requires Java; full application with system access!)
		RasMol (require local installation)
		Molscript (VRML) (requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)

	Ligands, Modified Residues, Ions
		BMA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		BRN	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CA	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		CU	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		GOL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		NAG	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		TPQ	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]

	Sites
		AC1	[ RasMol ]	+environment [ RasMol ]
		AC2	[ RasMol ]	+environment [ RasMol ]
		AC3	[ RasMol ]	+environment [ RasMol ]
		AC4	[ RasMol ]	+environment [ RasMol ]
		AC5	[ RasMol ]	+environment [ RasMol ]
		AC6	[ RasMol ]	+environment [ RasMol ]
		AC7	[ RasMol ]	+environment [ RasMol ]
		AC8	[ RasMol ]	+environment [ RasMol ]
		AC9	[ RasMol ]	+environment [ RasMol ]
		BC1	[ RasMol ]	+environment [ RasMol ]
		BC2	[ RasMol ]	+environment [ RasMol ]
		BC3	[ RasMol ]	+environment [ RasMol ]
		BC4	[ RasMol ]	+environment [ RasMol ]
		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]
		BC7	[ RasMol ]	+environment [ RasMol ]
		BC8	[ RasMol ]	+environment [ RasMol ]
		BC9	[ RasMol ]	+environment [ RasMol ]
		CC1	[ RasMol ]	+environment [ RasMol ]
		CC2	[ RasMol ]	+environment [ RasMol ]
		CC3	[ RasMol ]	+environment [ RasMol ]
		CC4	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		Ala A:188 - Pro A:189	[ RasMol ]
		Ala B:188 - Pro B:189	[ RasMol ]
		Gly A:117 - Pro A:118	[ RasMol ]
		Gly B:117 - Pro B:118	[ RasMol ]
		Ile A:682 - Pro A:683	[ RasMol ]
		Ile B:682 - Pro B:683	[ RasMol ]
		Leu A:119 - Pro A:120	[ RasMol ]
		Leu B:119 - Pro B:120	[ RasMol ]

Jmol
	protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick [ Asym./Biol. Unit PNG format \| Asym./Biol. Unit - sites PNG format ](automatic orientation, automatically generated)
Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

Access by PDB/NDB ID
	3hig
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	AOC1_HUMAN \| P19801
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	1.4.3.22
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

Access by Disease Identifier (MIM ID)
	(no 'MIM ID' available)
		Disease Information	:	OMIM

Access by GenAge ID
	(no 'GenAge ID' available)
		Age Related Information	:	GenAge

Access by PDB/NDB ID
		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	AOC1_HUMAN \| P19801
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	AOC1_HUMAN \| P19801	:	3hi7 3hii 3k5t 3mph

3hi7	THE CRYSTAL STRUCTURE OF HUMAN DIAMINE OXIDASE
3hii

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (7, 24)

Sites (22, 22)

SS Bonds (5, 5)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (4, 8)

PROSITE Motifs (2, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (2, 4)

Pfam Domains (0, 0)

Gene Ontology (32, 32)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File