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(-) Description

Title :  COMPLEX OF A VESICULAR STOMATITIS VIRUS EMPTY CAPSID WITH THE NUCLEOCAPSID-BINDING DOMAIN OF THE PHOSPHOPROTEIN
 
Authors :  T. J. Green, M. Luo
Date :  18 May 09  (Deposition) - 28 Jul 09  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,K,L,M,N,O
Biol. Unit 1:  A,B,C,D,E,K,L,M,N,O  (2x)
Keywords :  Protein Complex, Template, Replication, Negative Strand Rna Virus, Chaperone, Phosphoprotein, Rna Replication, Virion, Ribonucleoprotein, Rna-Binding, Viral Nucleoprotein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. J. Green, M. Luo
Structure Of The Vesicular Stomatitis Virus Nucleocapsid In Complex With The Nucleocapsid-Binding Domain Of The Small Polymerase Cofactor, P.
Proc. Natl. Acad. Sci. Usa V. 106 11713 2009
PubMed-ID: 19571006  |  Reference-DOI: 10.1073/PNAS.0903228106

(-) Compounds

Molecule 1 - PHOSPHOPROTEIN
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 183-265
    Gene: NUCLEOCAPSID PROTEIN, P
    Mutation: YES
    Organism Common: VSIV
    Organism Scientific: VESICULAR STOMATITIS INDIANA VIRUS
    Organism Taxid: 11277
    Synonym: PROTEIN P, PROTEIN M1
 
Molecule 2 - NUCLEOPROTEIN
    Chains: K, L, M, N, O
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: N, PHOSPHOPROTEIN
    Organism Common: VSIV
    Organism Scientific: VESICULAR STOMATITIS INDIANA VIRUS
    Organism Taxid: 11277
    Synonym: NP, NUCLEOCAPSID PROTEIN, PROTEIN N

 Structural Features

(-) Chains, Units

  12345678910
Asymmetric Unit : ABCDEKLMNO
Biological Unit 1 (2x): ABCDEKLMNO

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 16)

Asymmetric Unit (2, 16)
No.NameCountTypeFull Name
1MSE10Mod. Amino AcidSELENOMETHIONINE
2TAR6Ligand/IonD(-)-TARTARIC ACID
Biological Unit 1 (2, 32)
No.NameCountTypeFull Name
1MSE20Mod. Amino AcidSELENOMETHIONINE
2TAR12Ligand/IonD(-)-TARTARIC ACID

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELEU C:217 , ALA C:259 , TYR C:263 , THR M:361 , GLY M:362 , THR M:366BINDING SITE FOR RESIDUE TAR M 1
2AC2SOFTWARELYS K:83 , GLY K:99 , ASP K:100 , THR K:101 , LEU M:48 , SER M:128BINDING SITE FOR RESIDUE TAR K 423
3AC3SOFTWAREASP K:392 , LYS O:388 , PRO O:389BINDING SITE FOR RESIDUE TAR O 423
4AC4SOFTWARELYS K:132 , MET K:166 , GLU K:209 , CYS K:210BINDING SITE FOR RESIDUE TAR K 424
5AC5SOFTWAREASP K:224 , ALA K:226 , TRP K:290 , SER K:291 , VAL K:292BINDING SITE FOR RESIDUE TAR K 425
6AC6SOFTWAREGLY K:265 , GLU K:267 , ASP K:269 , LYS K:270BINDING SITE FOR RESIDUE TAR K 426

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 3HHW)

(-) Cis Peptide Bonds  (7, 7)

Asymmetric Unit
No.Residues
1Val A:194 -Ser A:195
2Val B:194 -Ser B:195
3Val C:194 -Ser C:195
4Val D:194 -Ser D:195
5Val E:194 -Ser E:195
6Asn L:43 -Thr L:44
7Gly O:362 -Gly O:363

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 3HHW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 3HHW)

(-) Exons   (0, 0)

(no "Exon" information available for 3HHW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:73
 aligned with PHOSP_VSIVM | P04880 from UniProtKB/Swiss-Prot  Length:265

    Alignment length:73
                                   202       212       222       232       242       252       262   
          PHOSP_VSIVM   193 AVSDVWSLSKTSMTFQPKKASLQPLTISLDELFSSRGEFISVGGNGRMSHKEAILLGLRYKKLYNQARVKYSL 265
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhh..eeee.........eeeehhhhh..hhhhhhhh.....hhhhhhhhhh....hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 3hhw A 193 AVSDVWSLSKTSmTFQPKKASLQPLTISLDELFSSRGEFISVGGNGRmSHKEAILLGLRYKKLYNQARVKYSL 265
                                   202  |    212       222       232       242       252       262   
                                      205-MSE                            240-MSE                     


Chain B from PDB  Type:PROTEIN  Length:73
 aligned with PHOSP_VSIVM | P04880 from UniProtKB/Swiss-Prot  Length:265

    Alignment length:73
                                   202       212       222       232       242       252       262   
          PHOSP_VSIVM   193 AVSDVWSLSKTSMTFQPKKASLQPLTISLDELFSSRGEFISVGGNGRMSHKEAILLGLRYKKLYNQARVKYSL 265
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh...eee.........eee...........hhhhhh....hhhhhhhh......hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 3hhw B 193 AVSDVWSLSKTSmTFQPKKASLQPLTISLDELFSSRGEFISVGGNGRmSHKEAILLGLRYKKLYNQARVKYSL 265
                                   202  |    212       222       232       242       252       262   
                                      205-MSE                            240-MSE                     


Chain C from PDB  Type:PROTEIN  Length:73
 aligned with PHOSP_VSIVM | P04880 from UniProtKB/Swiss-Prot  Length:265

    Alignment length:73
                                   202       212       222       232       242       252       262   
          PHOSP_VSIVM   193 AVSDVWSLSKTSMTFQPKKASLQPLTISLDELFSSRGEFISVGGNGRMSHKEAILLGLRYKKLYNQARVKYSL 265
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhh.eee.........eeehhhhhh..hhhhhhhh.....hhhhhhhhhh.....hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 3hhw C 193 AVSDVWSLSKTSmTFQPKKASLQPLTISLDELFSSRGEFISVGGNGRmSHKEAILLGLRYKKLYNQARVKYSL 265
                                   202  |    212       222       232       242       252       262   
                                      205-MSE                            240-MSE                     


Chain D from PDB  Type:PROTEIN  Length:73
 aligned with PHOSP_VSIVM | P04880 from UniProtKB/Swiss-Prot  Length:265

    Alignment length:73
                                   202       212       222       232       242       252       262   
          PHOSP_VSIVM   193 AVSDVWSLSKTSMTFQPKKASLQPLTISLDELFSSRGEFISVGGNGRMSHKEAILLGLRYKKLYNQARVKYSL 265
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh..eeee.........eeeehhhhh...............hhhhhhhhhh.....hhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 3hhw D 193 AVSDVWSLSKTSmTFQPKKASLQPLTISLDELFSSRGEFISVGGNGRmSHKEAILLGLRYKKLYNQARVKYSL 265
                                   202  |    212       222       232       242       252       262   
                                      205-MSE                            240-MSE                     


Chain E from PDB  Type:PROTEIN  Length:73
 aligned with PHOSP_VSIVM | P04880 from UniProtKB/Swiss-Prot  Length:265

    Alignment length:73
                                   202       212       222       232       242       252       262   
          PHOSP_VSIVM   193 AVSDVWSLSKTSMTFQPKKASLQPLTISLDELFSSRGEFISVGGNGRMSHKEAILLGLRYKKLYNQARVKYSL 265
               SCOP domains ------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhh..eeee.........eeee.hhh...hhhhhhhh.....hhhhhhhh........hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------- Transcript
                 3hhw E 193 AVSDVWSLSKTSmTFQPKKASLQPLTISLDELFSSRGEFISVGGNGRmSHKEAILLGLRYKKLYNQARVKYSL 265
                                   202  |    212       222       232       242       252       262   
                                      205-MSE                            240-MSE                     


Chain K from PDB  Type:PROTEIN  Length:421
 aligned with NCAP_VSIVN | Q77E03 from UniProtKB/Swiss-Prot  Length:422

    Alignment length:421
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
           NCAP_VSIVN     2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
               SCOP domains d3hhwk_ K: automated matches                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -----------------------------------3hhwK01 K:37-219 Rhabdovirus nucleocapsid protein like domain                                                                                                                          --3hhwK02 K:222-421 Nucleoprotein                                                                                                                                                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....ee............hhhhh........eee....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..eee....eee..eeee....eee.....eee.................hhhhhhhhhhhhhhhhh.......hhhhhh.hhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhhhh...........hhhhh...........hhhhhhhhhhhhhhhhhhh...hhhhh......hhhhhhhhhhhhhhhhhhh................................hhhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hhw K   2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYWSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 


Chain L from PDB  Type:PROTEIN  Length:421
 aligned with NCAP_VSIVN | Q77E03 from UniProtKB/Swiss-Prot  Length:422

    Alignment length:421
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
           NCAP_VSIVN     2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
               SCOP domains d3hhwl_ L: automated matches                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -----------------------------------3hhwL01 L:37-219 Rhabdovirus nucleocapsid protein like domain                                                                                                                          --3hhwL02 L:222-421 Nucleoprotein                                                                                                                                                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....ee............hhhhhh.......ee.....hhhhhhhhhhhhh.....hhhhhhhhhhhhh...eee....eee..eeee....eee.....ee......................hhhhhhhh..hhhhh...hhhhhhhhhh.hhhhh...............hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhhhh...........hhhhh...........hhhhhhhhhhhhhhhhhhh...hhhhh......hhhhhhhhhhhhhhhhhhh......ee........................hhhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hhw L   2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYWSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 


Chain M from PDB  Type:PROTEIN  Length:421
 aligned with NCAP_VSIVN | Q77E03 from UniProtKB/Swiss-Prot  Length:422

    Alignment length:421
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
           NCAP_VSIVN     2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
               SCOP domains d3hhwm_ M: automated matches                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -----------------------------------3hhwM01 M:37-219 Rhabdovirus nucleocapsid protein like domain                                                                                                                          --3hhwM02 M:222-421 Nucleoprotein                                                                                                                                                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee......ee............hhhhhhhh.....ee.....hhhhhhhhhhhhhhh...hhhhhhhhhhhhhh..eee....eee..eeee....eee.....ee......................hhhhhhhhhhhhh.....hhhhhh.....hhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhhh..hhhhhhhhhhhh...........hhhhh...............hhhhhhhhhhhhhhh...hhhhh......hhhhhhhhhhhhhhhhhhh......ee........................hhhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hhw M   2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYWSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 


Chain N from PDB  Type:PROTEIN  Length:421
 aligned with NCAP_VSIVN | Q77E03 from UniProtKB/Swiss-Prot  Length:422

    Alignment length:421
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
           NCAP_VSIVN     2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
               SCOP domains d3hhwn_ N: automated matches                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -----------------------------------3hhwN01 N:37-219 Rhabdovirus nucleocapsid protein like domain                                                                                                                          --3hhwN02 N:222-421 Nucleoprotein                                                                                                                                                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee....eee.............hhhhhh.............hhhhhhhhhhhhhhhh..hhhhhhhhhhhh...........ee....eee....................................hhhhhhhhhhhhhhh....................................hhhhhhhhhhhhhhhhhhhhhh....hhhhhh.hhhhh...hhhhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhh...........hhhhh...............hhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhh......ee........................hhhhhhhhhhhh....hhhhhhhhhhhhh........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hhw N   2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYWSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 


Chain O from PDB  Type:PROTEIN  Length:421
 aligned with NCAP_VSIVN | Q77E03 from UniProtKB/Swiss-Prot  Length:422

    Alignment length:421
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421 
           NCAP_VSIVN     2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYSSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
               SCOP domains d3hhwo_ O: automated matches                                                                                                                                                                                                                                                                                                                                                                                                          SCOP domains
               CATH domains -----------------------------------3hhwO01 O:37-219 Rhabdovirus nucleocapsid protein like domain                                                                                                                          --3hhwO02 O:222-421 Nucleoprotein                                                                                                                                                                         - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eee.....ee............hhhhhhhh.....ee.....hhhhhhhhhhhhh.....hhhhhhhhhhhhhh..eee....eee..eeee....eee.....ee......................hhhhhhhhhhhhhhh...hhhhhh.hhhhhh....................hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.hhhhhhh...hhhhhhhhhhhh...........hhhhh...............hhhhhhhhhhhhhhh...hhhhh......hhhhhhhhhhhhhhhhhhh................................hhhhhhhhhhh.....hhhhhhhhhhhhh........hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 3hhw O   2 SVTVKRIIDNTVIVPKLPANEDPVEYPADYFRKSKEIPLYINTTKSLSDLRGYVYQGLKSGNVSIIHVNSYLYGALKDIRGKLDKDWSSFGINIGKAGDTIGIFDLVSLKALDGVLPDGVSDASRTSADDKWLPLYLLGLYRVGRTQMPEYRKKLMDGLTNQCKMINEQFEPLVPEGRDIFDVWGNDSNYTKIVAAVDMFFHMFKKHECASFRYGTIVSRFKDCAALATFGHLCKITGMSTEDVTTWILNREVADEMVQMMLPGQEIDKADSYMPYLIDFGLSSKSPYWSVKNPAFHFWGQLTALLLRSTRARNARQPDDIEYTSLTTAGLLYAYAVGSSADLAQQFCVGDNKYTPDDSTGGLTTNAPPQGRDVVEWLGWFEDQNRKPTPDMMQYAKRAVMSLQGLREKTIGKYAKSEFDK 422
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421
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 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (2, 10)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 3HHW)

(-) Gene Ontology  (8, 10)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E   (PHOSP_VSIVM | P04880)
molecular function
    GO:0003968    RNA-directed 5'-3' RNA polymerase activity    Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1); uses an RNA template, i.e. the catalysis of RNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time.
biological process
    GO:0001172    transcription, RNA-templated    The cellular synthesis of RNA on a template of RNA.
cellular component
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

Chain K,L,M,N,O   (NCAP_VSIVN | Q77E03)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
cellular component
    GO:0019029    helical viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles; the subunits are arranged to form a protein helix with the genetic material contained within. Tobacco mosaic virus has such a capsid structure.
    GO:0030430    host cell cytoplasm    The cytoplasm of a host cell.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019013    viral nucleocapsid    The complete protein-nucleic acid complex that is the packaged form of the genome in a virus particle.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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  3hhw
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCAP_VSIVN | Q77E03: 3hhz
        PHOSP_VSIVM | P04880: 2fqm 3hhz

(-) Related Entries Specified in the PDB File

3hhz