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(-) Description

Title :  CHAPERONE HSCB FROM VIBRIO CHOLERAE
 
Authors :  J. Osipiuk, M. Gu, L. Papazisi, W. F. Anderson, A. Joachimiak, Center F Structural Genomics Of Infectious Diseases (Csgid)
Date :  17 Jan 13  (Deposition) - 30 Jan 13  (Release) - 30 Jan 13  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Structural Genomics, Chaperone, Hscb, Hsc20, Niaid, National Institute Of Allergy And Infectious Diseases, Center For Structural Genomics Of Infectious Diseases, Csgid (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Osipiuk, M. Gu, L. Papazisi, W. F. Anderson, A. Joachimiak
Chaperone Hscb From Vibrio Cholerae.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CO-CHAPERONE PROTEIN HSCB HOMOLOG
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: HSCB, VC_0751
    Organism Scientific: VIBRIO CHOLERAE
    Organism Taxid: 666
    Strain: N16961

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 31)

Asymmetric/Biological Unit (2, 31)
No.NameCountTypeFull Name
1CA5Ligand/IonCALCIUM ION
2MSE26Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:163 , GLU A:166 , HOH A:404 , HOH A:414 , HOH A:423 , GLU B:166BINDING SITE FOR RESIDUE CA A 301
2AC2SOFTWAREASP A:167 , GLU B:163 , ASP B:167 , HOH B:313 , HOH C:314BINDING SITE FOR RESIDUE CA B 201
3AC3SOFTWAREGLU C:163 , GLU C:166 , HOH C:318 , HOH C:327 , GLU D:166 , CA D:202BINDING SITE FOR RESIDUE CA C 201
4AC4SOFTWAREHOH A:408 , HOH A:421 , ASP C:167 , GLU D:163 , ASP D:167 , HOH D:308BINDING SITE FOR RESIDUE CA D 201
5AC5SOFTWAREGLU C:163 , GLU C:166 , CA C:201 , HOH C:312 , GLU D:163 , GLU D:166 , HOH D:305BINDING SITE FOR RESIDUE CA D 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 4IT5)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 4IT5)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 4IT5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 4IT5)

(-) Exons   (0, 0)

(no "Exon" information available for 4IT5)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:164
                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh........hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4it5 A   1 mNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLmAVQQAAQINDAYQTLKDPLRRAEYLLSLQGIEmNQDPmFLmEQmELREELESVTACADPEAALVAFDTKVTAmQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERVEDQLL 170
                            |       10        20        30        40     |  50        60        70        80|  |  | 96       106       116       126       136       146       156       166    
                            |                                           46-MSE                           79-MSE|  |  |                          125-MSE                                         
                            1-MSE                                                                         80|  |  |  |                                                                          
                                                                                                           87  |  |  |                                                                          
                                                                                                              90-MSE |                                                                          
                                                                                                                 93-MSE                                                                         
                                                                                                                    96-MSE                                                                      


Chain B from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh........hhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4it5 B   2 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLmAVQQAAQINDAYQTLKDPLRRAEYLLSLQGIEmNAEQQTLQDPmFLmEQmELREELESVTACADPEAALVAFDTKVTAmQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERVEDQLL 170
                                    11        21        31        41    |   51        61        71       |81        91 |  |  101       111       121   |   131       141       151       161         
                                                                       46-MSE                           79-MSE     90-MSE |                          125-MSE                                         
                                                                                                                      93-MSE                                                                         
                                                                                                                         96-MSE                                                                      


Chain C from PDB  Type:PROTEIN  Length:163
                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhh........hhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4it5 C   1 mNYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLmAVQQAAQINDAYQTLKDPLRRAEYLLSLQGIEmNDPmFLmEQmELREELESVTACADPEAALVAFDTKVTAmQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERVEDQLL 170
                            |       10        20        30        40     |  50        60        70        80| |  |  97       107       117       127       137       147       157       167   
                            1-MSE                                       46-MSE                           79-MSE  |  |                          125-MSE                                         
                                                                                                          80| |  |  |                                                                          
                                                                                                           88 |  |  |                                                                          
                                                                                                             90-MSE |                                                                          
                                                                                                                93-MSE                                                                         
                                                                                                                   96-MSE                                                                      


Chain D from PDB  Type:PROTEIN  Length:169
                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhh........hhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 4it5 D   2 NYFELFGLPIQFELDGSLLSSQFRALQKRFHPDNFATASERDRLmAVQQAAQINDAYQTLKDPLRRAEYLLSLQGIEmNAEQQTLQDPmFLmEQmELREELESVTACADPEAALVAFDTKVTAmQRHYLAQLQGQLAQSEWLAAADQIRKLKFIAKLKNEVERVEDQLL 170
                                    11        21        31        41    |   51        61        71       |81        91 |  |  101       111       121   |   131       141       151       161         
                                                                       46-MSE                           79-MSE     90-MSE |                          125-MSE                                         
                                                                                                                      93-MSE                                                                         
                                                                                                                         96-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 4IT5)

(-) CATH Domains  (0, 0 ; only for superseded entry 3HHO: 2,8)

(no "CATH Domain" information available for 4IT5, only for superseded entry 3HHO replaced by 4IT5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 4IT5)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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