3HET - JenaLib

Title :   CYCLIC RESIDUES IN ALPHA/BETA-PEPTIDE HELIX BUNDLES: GCN4-PLI SIDE CHAIN SEQUENCE ON AN (ALPHA-ALPHA-BETA) BACKBONE WITH A CYCLIC BETA-RESIDUE AT POSITION 10

Authors :   W. S. Horne, J. L. Price, S. H. Gellman

Date :   10 May 09 (Deposition) - 21 Apr 10 (Release) - 18 May 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B
Biol. Unit 1: A,B  (4x)
Biol. Unit 2: A  (4x)
Biol. Unit 3: B  (4x)

Keywords :   Helix Bundle, Foldamer, Alpha/Beta-Peptide, De Novo Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. L. Price, W. S. Horne, S. H. Gellman
Structural Consequences Of Beta-Amino Acid Preorganization In A Self-Assembling Alpha/Beta-Peptide: Fundamental Studie Of Foldameric Helix Bundles.
J. Am. Chem. Soc. V. 132 12378 2010
PubMed-ID: 20718422 | Reference-DOI: 10.1021/JA103543S

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (9, 22)

Asymmetric Unit (9, 22)

No.	Name	Count	Type	Full Name
1	B3D	2	Mod. Amino Acid	3-AMINOPENTANEDIOIC ACID
2	B3E	2	Mod. Amino Acid	(3S)-3-AMINOHEXANEDIOIC ACID
3	B3K	2	Mod. Amino Acid	(3S)-3,7-DIAMINOHEPTANOIC ACID
4	B3L	4	Mod. Amino Acid	(3S)-3-AMINO-5-METHYLHEXANOIC ACID
5	B3Q	2	Mod. Amino Acid	(3S)-3,6-DIAMINO-6-OXOHEXANOIC ACID
6	BAL	2	Mod. Amino Acid	BETA-ALANINE
7	BIL	2	Mod. Amino Acid	(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
8	HMR	4	Mod. Amino Acid	BETA-HOMOARGININE
9	XCP	2	Mod. Amino Acid	(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID

Biological Unit 1 (9, 88)

No.	Name	Count	Type	Full Name
1	B3D	8	Mod. Amino Acid	3-AMINOPENTANEDIOIC ACID
2	B3E	8	Mod. Amino Acid	(3S)-3-AMINOHEXANEDIOIC ACID
3	B3K	8	Mod. Amino Acid	(3S)-3,7-DIAMINOHEPTANOIC ACID
4	B3L	16	Mod. Amino Acid	(3S)-3-AMINO-5-METHYLHEXANOIC ACID
5	B3Q	8	Mod. Amino Acid	(3S)-3,6-DIAMINO-6-OXOHEXANOIC ACID
6	BAL	8	Mod. Amino Acid	BETA-ALANINE
7	BIL	8	Mod. Amino Acid	(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
8	HMR	16	Mod. Amino Acid	BETA-HOMOARGININE
9	XCP	8	Mod. Amino Acid	(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID

Biological Unit 2 (9, 44)

No.	Name	Count	Type	Full Name
1	B3D	4	Mod. Amino Acid	3-AMINOPENTANEDIOIC ACID
2	B3E	4	Mod. Amino Acid	(3S)-3-AMINOHEXANEDIOIC ACID
3	B3K	4	Mod. Amino Acid	(3S)-3,7-DIAMINOHEPTANOIC ACID
4	B3L	8	Mod. Amino Acid	(3S)-3-AMINO-5-METHYLHEXANOIC ACID
5	B3Q	4	Mod. Amino Acid	(3S)-3,6-DIAMINO-6-OXOHEXANOIC ACID
6	BAL	4	Mod. Amino Acid	BETA-ALANINE
7	BIL	4	Mod. Amino Acid	(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
8	HMR	8	Mod. Amino Acid	BETA-HOMOARGININE
9	XCP	4	Mod. Amino Acid	(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID

Biological Unit 3 (9, 44)

No.	Name	Count	Type	Full Name
1	B3D	4	Mod. Amino Acid	3-AMINOPENTANEDIOIC ACID
2	B3E	4	Mod. Amino Acid	(3S)-3-AMINOHEXANEDIOIC ACID
3	B3K	4	Mod. Amino Acid	(3S)-3,7-DIAMINOHEPTANOIC ACID
4	B3L	8	Mod. Amino Acid	(3S)-3-AMINO-5-METHYLHEXANOIC ACID
5	B3Q	4	Mod. Amino Acid	(3S)-3,6-DIAMINO-6-OXOHEXANOIC ACID
6	BAL	4	Mod. Amino Acid	BETA-ALANINE
7	BIL	4	Mod. Amino Acid	(3R,4S)-3-AMINO-4-METHYLHEXANOIC ACID
8	HMR	8	Mod. Amino Acid	BETA-HOMOARGININE
9	XCP	4	Mod. Amino Acid	(1S,2S)-2-AMINOCYCLOPENTANECARBOXYLIC ACID

Sites (0, 0)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  3het A  1 rMKxIEdKLxEIxSKxYHxENeLArIKkLLx 31
                            |  |  | 10  |  |  20 |  |  |30|
                            |  |  |  |  |  |  |  |  |  |  |
                            1-HMR |  |  |  |  |  |  |  |  |
                               4-B3Q |  |  |  |  |  |  |  |
                                  7-B3D |  |  |  |  |  |  |
                                    10-XCP |  |  |  |  |  |
                                       13-B3L |  |  |  |  |
                                          16-B3L |  |  |  |
                                             19-BIL |  |  |
                                                22-B3E |  |

Chain B from PDB  Type:PROTEIN  Length:31
                                                              
               SCOP domains ------------------------------- SCOP domains
               CATH domains ------------------------------- CATH domains
               Pfam domains ------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------- PROSITE
                 Transcript ------------------------------- Transcript
                  3het B  1 rMKxIEdKLxEIxSKxYHxENeLArIKkLLx 31
                            |  |  | 10  |  |  20 |  |  |30|
                            |  |  |  |  |  |  |  |  |  |  |
                            1-HMR |  |  |  |  |  |  |  |  |
                               4-B3Q |  |  |  |  |  |  |  |
                                  7-B3D |  |  |  |  |  |  |
                                    10-XCP |  |  |  |  |  |
                                       13-B3L |  |  |  |  |
                                          16-B3L |  |  |  |
                                             19-BIL |  |  |
                                                22-B3E |  |

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File

3c3g	GCN4-PLI DERIVATIVE WITH THE SAME ALPHA/BETA-PEPTIDE BACKBONE AND NO CYCLIC BETA-RESIDUES
3c3h	GCN4-PLI DERIVATIVE WITH THE SAME ALPHA/BETA-PEPTIDE BACKBONE AND DIFFERENT CYCLIC RESIDUE SUBSTITUTIONS
3heu	CYCLIC RESIDUES IN ALPHA/BETA-PEPTIDE HELIX BUNDLES: GCN4- PLI SIDE CHAIN SEQUENCE ON AN (ALPHA-ALPHA-BETA) BACKBONE WITH A CYCLIC BETA-RESIDUE AT POSITION 13
3hev	CYCLIC RESIDUES IN ALPHA/BETA-PEPTIDE HELIX BUNDLES: GCN4- PLI SIDE CHAIN SEQUENCE ON AN (ALPHA-ALPHA-BETA) BACKBONE WITH A CYCLIC BETA-RESIDUE AT POSITION 19
3hew	CYCLIC RESIDUES IN ALPHA/BETA-PEPTIDE HELIX BUNDLES: GCN4- PLI SIDE CHAIN SEQUENCE ON AN (ALPHA-ALPHA-BETA) BACKBONE WITH A CYCLIC BETA-RESIDUE AT POSITION 22
3hex	CYCLIC RESIDUES IN ALPHA/BETA-PEPTIDE HELIX BUNDLES: GCN4- PLI SIDE CHAIN SEQUENCE ON AN (ALPHA-ALPHA-BETA) BACKBONE WITH CYCLIC BETA-RESIDUES AT POSITIONS 1, 4, 19 AND 28
3hey	CYCLIC RESIDUES IN ALPHA/BETA-PEPTIDE HELIX BUNDLES: GCN4- PLI SIDE CHAIN SEQUENCE ON AN (ALPHA-ALPHA-BETA) BACKBONE WITH CYCLIC BETA-RESIDUES AT POSITIONS 1, 4, 10, 19 AND 28

Description